BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781140|ref|YP_003065553.1| hypothetical protein CLIBASIA_05210 [Candidatus Liberibacter asiaticus str. psy62] (44 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781140|ref|YP_003065553.1| hypothetical protein CLIBASIA_05210 [Candidatus Liberibacter asiaticus str. psy62] Length = 44 Score = 93.2 bits (230), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 44/44 (100%), Positives = 44/44 (100%) Query: 1 MDIYDGSWKLISYDPETGRTVWYMLDNQKRCVSDRLSCIPSYGD 44 MDIYDGSWKLISYDPETGRTVWYMLDNQKRCVSDRLSCIPSYGD Sbjct: 1 MDIYDGSWKLISYDPETGRTVWYMLDNQKRCVSDRLSCIPSYGD 44 >gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter asiaticus str. psy62] Length = 1398 Score = 21.9 bits (45), Expect = 2.0, Method: Composition-based stats. Identities = 7/11 (63%), Positives = 9/11 (81%) Query: 9 KLISYDPETGR 19 K + +DPETGR Sbjct: 702 KRVEFDPETGR 712 >gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 21.2 bits (43), Expect = 3.5, Method: Composition-based stats. Identities = 6/13 (46%), Positives = 10/13 (76%) Query: 2 DIYDGSWKLISYD 14 +IYDG W+ S++ Sbjct: 385 NIYDGIWRATSFN 397 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.139 0.473 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,502 Number of Sequences: 1233 Number of extensions: 870 Number of successful extensions: 3 Number of sequences better than 100.0: 3 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3 length of query: 44 length of database: 328,796 effective HSP length: 17 effective length of query: 27 effective length of database: 307,835 effective search space: 8311545 effective search space used: 8311545 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.3 bits) S2: 31 (16.5 bits)