Query gi|254781141|ref|YP_003065554.1| hypothetical protein CLIBASIA_05225 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 196 No_of_seqs 124 out of 155 Neff 6.0 Searched_HMMs 13730 Date Wed Jun 1 11:45:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781141.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1b4ua_ a.88.1.1 (A:) LigA sub 69.7 1.4 0.0001 21.2 2.6 42 93-134 37-78 (132) 2 d1itua_ c.1.9.7 (A:) Renal dip 53.8 6.1 0.00044 16.9 5.2 47 90-140 295-342 (369) 3 d2fcwa1 a.13.1.1 (A:216-320) a 47.7 7.5 0.00055 16.3 3.6 35 92-131 2-42 (105) 4 d1fada_ a.77.1.2 (A:) FADD (Mo 46.1 8 0.00058 16.1 4.3 27 98-124 16-42 (95) 5 d1ddfa_ a.77.1.2 (A:) Fas {Hum 36.3 11 0.0008 15.2 2.5 27 98-124 20-47 (127) 6 d1q7ea_ c.123.1.1 (A:) Hypothe 35.6 10 0.00074 15.4 2.3 31 91-121 293-325 (417) 7 d1i5pa3 f.1.3.1 (A:1-263) delt 32.6 13 0.00093 14.8 4.3 49 78-126 149-211 (263) 8 d1ywfa1 c.45.1.5 (A:4-275) Pho 31.7 12 0.0009 14.8 2.2 21 103-123 247-267 (272) 9 d1b43a1 a.60.7.1 (A:220-339) F 31.3 11 0.00083 15.1 1.9 29 90-123 69-98 (120) 10 d2gf5a1 a.77.1.2 (A:89-191) FA 27.5 9.5 0.00069 15.6 1.0 20 105-124 23-42 (103) 11 d1knca_ a.152.1.1 (A:) Antioxi 26.6 16 0.0012 14.1 2.5 31 84-119 3-33 (174) 12 d1icha_ a.77.1.2 (A:) Tumor ne 25.0 17 0.0012 14.0 1.9 20 105-124 15-34 (87) 13 d2ou3a1 a.287.1.1 (A:1-160) Te 23.9 9.5 0.00069 15.6 0.4 35 92-126 104-138 (160) 14 d2c0sa1 a.30.7.1 (A:1-57) Hypo 23.3 19 0.0013 13.7 2.9 39 100-140 11-49 (57) 15 d1goia2 c.1.8.5 (A:3-291,A:380 22.7 19 0.0014 13.6 3.3 28 93-120 112-139 (356) 16 d1itxa1 c.1.8.5 (A:33-337,A:41 21.7 20 0.0014 13.5 3.2 29 93-121 142-170 (347) 17 d1ngra_ a.77.1.2 (A:) p75 low 21.7 19 0.0014 13.6 1.7 22 103-124 21-42 (85) No 1 >d1b4ua_ a.88.1.1 (A:) LigA subunit of an aromatic-ring-opening dioxygenase LigAB {Sphingomonas paucimobilis, formerly Pseudomonas paucimobilis [TaxId: 13689]} Probab=69.67 E-value=1.4 Score=21.15 Aligned_cols=42 Identities=7% Similarity=-0.021 Sum_probs=35.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHH Q ss_conf 589899999999999999975999899972059999999999 Q gi|254781141|r 93 TKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYY 134 (196) Q Consensus 93 ~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v~D~R~i~vl~~ 134 (196) +..|+-++.|..+-..|+..+|.|++|...|.+-..+.+++- T Consensus 37 L~~~e~R~~F~aDe~Ayl~~~~LTeEek~Av~~rD~~~Li~l 78 (132) T d1b4ua_ 37 LMKAENRERFKADESAYLDEWNLTPAAKAAVLARDYNAMIDE 78 (132) T ss_dssp TTSHHHHHHHHHCHHHHHHTTTCCHHHHHHHHHTCHHHHHHT T ss_pred HCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHC T ss_conf 857999999980999998727999999999983019999994 No 2 >d1itua_ c.1.9.7 (A:) Renal dipeptidase {Human (Homo sapiens) [TaxId: 9606]} Probab=53.75 E-value=6.1 Score=16.92 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=37.5 Q ss_pred CCC-CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHH Q ss_conf 836-589899999999999999975999899972059999999999999999 Q gi|254781141|r 90 FPQ-TKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQ 140 (196) Q Consensus 90 iPe-~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v~D~R~i~vl~~Am~y~~ 140 (196) .|+ |.|.. ..-+|...+...|||+++|..|.--..+.|++..+++.. T Consensus 295 ~p~gl~~~~----~~p~l~~~L~~rG~se~~i~ki~g~N~lRv~~~v~~~~~ 342 (369) T d1itua_ 295 VPEGLEDVS----KYPDLIAELLRRNWTEAEVKGALADNLLRVFEAVEQASN 342 (369) T ss_dssp CCBTCSSTT----CHHHHHHHHHHTTCCHHHHHHHHTHHHHHHHHHHHHHCC T ss_pred CCCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 987777877----889999999986999999999998869999999999998 No 3 >d2fcwa1 a.13.1.1 (A:216-320) alpha-2-Macroglobulin receptor associated protein (RAP) {Human (Homo sapiens) [TaxId: 9606]} Probab=47.70 E-value=7.5 Score=16.30 Aligned_cols=35 Identities=9% Similarity=0.261 Sum_probs=25.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH------CCHHHHHH Q ss_conf 65898999999999999999759998999720------59999999 Q gi|254781141|r 92 QTKDPAQRENFFKNLFRIGNILGFQKEEMVDI------TDHRLLSL 131 (196) Q Consensus 92 e~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v------~D~R~i~v 131 (196) ||..|.+ .++-..|..-+||++|+.++ |.+|..++ T Consensus 2 EF~EPkV-----q~LW~~A~~~nFt~~EL~SlkeEL~HfE~rl~K~ 42 (105) T d2fcwa1 2 EFEEPRV-----IDLWDLAQSANLTDKELEAFREELKHFEAKIEKH 42 (105) T ss_dssp SCCSHHH-----HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHH-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 8641678-----9999999985999899999999999999999999 No 4 >d1fada_ a.77.1.2 (A:) FADD (Mort1) {Mouse (Mus musculus) [TaxId: 10090]} Probab=46.09 E-value=8 Score=16.14 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=22.3 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHC Q ss_conf 999999999999997599989997205 Q gi|254781141|r 98 QRENFFKNLFRIGNILGFQKEEMVDIT 124 (196) Q Consensus 98 k~~~~~~~i~~~~~~~Gfs~eEi~~v~ 124 (196) .+..+..+...+|..+|||+.+|..|. T Consensus 16 ia~~lg~~Wk~Lar~Lgls~~~I~~I~ 42 (95) T d1fada_ 16 VCDNVGRDWKRLARELKVSEAKMDGIE 42 (95) T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 999987849999989097999999999 No 5 >d1ddfa_ a.77.1.2 (A:) Fas {Human (Homo sapiens) [TaxId: 9606]} Probab=36.34 E-value=11 Score=15.21 Aligned_cols=27 Identities=7% Similarity=0.019 Sum_probs=21.7 Q ss_pred HHHHHH-HHHHHHHHHCCCCHHHHHHHC Q ss_conf 999999-999999997599989997205 Q gi|254781141|r 98 QRENFF-KNLFRIGNILGFQKEEMVDIT 124 (196) Q Consensus 98 k~~~~~-~~i~~~~~~~Gfs~eEi~~v~ 124 (196) .+..+. .++..+|..+|||+.+|..|. T Consensus 20 ia~~l~~~dwk~lar~LGls~~~I~~I~ 47 (127) T d1ddfa_ 20 IAGVMTLSQVKGFVRKNGVNEAKIDEIK 47 (127) T ss_dssp HHHHSCHHHHHHHHHTTTSCHHHHHHHH T ss_pred HHHHCCHHHHHHHHHHCCCCHHHHHHHH T ss_conf 9987798899999999499999999999 No 6 >d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]} Probab=35.58 E-value=10 Score=15.42 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=12.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHH--HCCCCHHHHH Q ss_conf 365898999999999999999--7599989997 Q gi|254781141|r 91 PQTKDPAQRENFFKNLFRIGN--ILGFQKEEMV 121 (196) Q Consensus 91 Pe~~D~~k~~~~~~~i~~~~~--~~Gfs~eEi~ 121 (196) |.|.++..+.....++..-.. -...|.+|+. T Consensus 293 ~~~~~~~~r~~~~~~l~~~i~~~~~~~t~~e~~ 325 (417) T d1q7ea_ 293 PAYSTAHARQPHIFDIFAEIEKYTVTIDKHEAV 325 (417) T ss_dssp TTTSSHHHHGGGHHHHHHHHHHHHTTSCHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHE T ss_conf 200000012211999987776521133310110 No 7 >d1i5pa3 f.1.3.1 (A:1-263) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId: 29339]} Probab=32.58 E-value=13 Score=14.76 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=35.3 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH--------------HHHHHHHHHHHHCCCCHHHHHHHCCH Q ss_conf 99999999999583658989999--------------99999999999759998999720599 Q gi|254781141|r 78 KLIAENQQLEHLFPQTKDPAQRE--------------NFFKNLFRIGNILGFQKEEMVDITDH 126 (196) Q Consensus 78 ~l~~e~~~L~e~iPe~~D~~k~~--------------~~~~~i~~~~~~~Gfs~eEi~~v~D~ 126 (196) ....=...+...||.|+.+.--- .+..+...||..+||++.+|++.++. T Consensus 149 ~f~~l~~~f~~~ip~F~~~~ye~~lLp~YaqaAnLHLlLLrD~i~yg~~Wg~s~~~i~~y~~~ 211 (263) T d1i5pa3 149 SVNTMQQLFLNRLPQFQIQGYQLLLLPLFAQAANMHLSFIRDVILNADEWGISAATLRTYRDY 211 (263) T ss_dssp HHHHHHHHHHHHGGGGSCTTCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 999999999998898724883242499999999999999999999998639988899999999 No 8 >d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]} Probab=31.75 E-value=12 Score=14.84 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=12.6 Q ss_pred HHHHHHHHHHCCCCHHHHHHH Q ss_conf 999999999759998999720 Q gi|254781141|r 103 FKNLFRIGNILGFQKEEMVDI 123 (196) Q Consensus 103 ~~~i~~~~~~~Gfs~eEi~~v 123 (196) +..+..|+.+.|||++++..+ T Consensus 247 yGs~~~YL~~~Gl~~~~i~~L 267 (272) T d1ywfa1 247 YGSLGGYLRDAGISQATVNRM 267 (272) T ss_dssp HSSHHHHHHHTTCCHHHHHHH T ss_pred HCCHHHHHHHCCCCHHHHHHH T ss_conf 099999998869999999999 No 9 >d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=31.26 E-value=11 Score=15.10 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=23.5 Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-HCCCCHHHHHHH Q ss_conf 8365898999999999999999-759998999720 Q gi|254781141|r 90 FPQTKDPAQRENFFKNLFRIGN-ILGFQKEEMVDI 123 (196) Q Consensus 90 iPe~~D~~k~~~~~~~i~~~~~-~~Gfs~eEi~~v 123 (196) -++|+.| -...|++|+. ..|||++.|..+ T Consensus 69 ~~~~~~p-----d~~~l~~fL~~e~~f~~~rv~~~ 98 (120) T d1b43a1 69 NLVWRDP-----DEEGILKFLCDEHDFSEERVKNG 98 (120) T ss_dssp CCCCCCC-----CHHHHHHHHTTTTCCCHHHHHHH T ss_pred CCCCCCC-----CHHHHHHHHHHCCCCCHHHHHHH T ss_conf 8677999-----98999999998129899999999 No 10 >d2gf5a1 a.77.1.2 (A:89-191) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]} Probab=27.51 E-value=9.5 Score=15.63 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=16.5 Q ss_pred HHHHHHHHCCCCHHHHHHHC Q ss_conf 99999997599989997205 Q gi|254781141|r 105 NLFRIGNILGFQKEEMVDIT 124 (196) Q Consensus 105 ~i~~~~~~~Gfs~eEi~~v~ 124 (196) +...+|..+|||+.+|..|. T Consensus 23 ~W~~La~~Lgl~~~~I~~I~ 42 (103) T d2gf5a1 23 DWRRLARQLKVSDTKIDSIE 42 (103) T ss_dssp THHHHHHHTTCCHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHH T ss_conf 39999999298999999999 No 11 >d1knca_ a.152.1.1 (A:) Antioxidant defense protein AhpD {Mycobacterium tuberculosis [TaxId: 1773]} Probab=26.65 E-value=16 Score=14.09 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=15.2 Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 999995836589899999999999999975999899 Q gi|254781141|r 84 QQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEE 119 (196) Q Consensus 84 ~~L~e~iPe~~D~~k~~~~~~~i~~~~~~~Gfs~eE 119 (196) +.|.+.||||.-+ ++-++.....+-+.++++ T Consensus 3 e~lk~~lP~yakD-----lkLNl~~~~~~~~L~~~~ 33 (174) T d1knca_ 3 EKLKAALPEYAKD-----IKLNLSSITRSSVLDQEQ 33 (174) T ss_dssp HHHHHHSCGGGHH-----HHHHHHHHTTCSSSCHHH T ss_pred HHHHHHCHHHHHH-----HHHHHHHCCCCCCCCHHH T ss_conf 8897768388999-----998898511435899999 No 12 >d1icha_ a.77.1.2 (A:) Tumor necrosis factor receptor-1 death domain {Human (Homo sapiens) [TaxId: 9606]} Probab=25.02 E-value=17 Score=13.96 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=16.3 Q ss_pred HHHHHHHHCCCCHHHHHHHC Q ss_conf 99999997599989997205 Q gi|254781141|r 105 NLFRIGNILGFQKEEMVDIT 124 (196) Q Consensus 105 ~i~~~~~~~Gfs~eEi~~v~ 124 (196) +...+|..+|||+.+|..|. T Consensus 15 ~Wk~lar~LGls~~~i~~I~ 34 (87) T d1icha_ 15 RWKEFVKRLGLSDHEIDRLE 34 (87) T ss_dssp THHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHH T ss_conf 89999999194999999999 No 13 >d2ou3a1 a.287.1.1 (A:1-160) Tellurite resistance protein of COG3793 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Probab=23.85 E-value=9.5 Score=15.63 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=27.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCH Q ss_conf 65898999999999999999759998999720599 Q gi|254781141|r 92 QTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDH 126 (196) Q Consensus 92 e~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v~D~ 126 (196) -+.|-.....+..-|+..+..+|++++++..+.|. T Consensus 104 a~aDG~~~~~E~~~l~~ia~~Lgi~~~~~~~l~~~ 138 (160) T d2ou3a1 104 SAADGELHEKEKAKIRKMATILGIKEEIVDQLEQL 138 (160) T ss_dssp HHTTSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHH T ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 98089899999999999999949999999999999 No 14 >d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Probab=23.26 E-value=19 Score=13.68 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=25.4 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHH Q ss_conf 99999999999975999899972059999999999999999 Q gi|254781141|r 100 ENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQ 140 (196) Q Consensus 100 ~~~~~~i~~~~~~~Gfs~eEi~~v~D~R~i~vl~~Am~y~~ 140 (196) +.-+.++..+...|||+.+.+-.. ++-+..|-.-..+-+ T Consensus 11 E~KK~eLi~Lv~~YGf~h~kvl~~--SQELD~LIN~~m~~k 49 (57) T d2c0sa1 11 EAKKKELIYLVEKYGFTHHKVISF--SQELDRLLNLLIELK 49 (57) T ss_dssp HHHHHHHHHHHHHTCTTSHHHHHH--HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHHHHHHHHH T ss_conf 999999999999978982689987--799999999999884 No 15 >d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain {Serratia marcescens [TaxId: 615]} Probab=22.74 E-value=19 Score=13.61 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=23.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 5898999999999999999759998999 Q gi|254781141|r 93 TKDPAQRENFFKNLFRIGNILGFQKEEM 120 (196) Q Consensus 93 ~~D~~k~~~~~~~i~~~~~~~Gfs~eEi 120 (196) .+|++.+.+|..++..++..+||.-=+| T Consensus 112 ~~~~~~R~~Fi~siv~~l~~ygfDGIDI 139 (356) T d1goia2 112 VKTPASRAKFAQSCVRIMKDYGFDGVNI 139 (356) T ss_dssp TSSHHHHHHHHHHHHHHHHHHTCSEEEE T ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 5899999999999999999829982446 No 16 >d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus circulans [TaxId: 1397]} Probab=21.69 E-value=20 Score=13.47 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=23.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 58989999999999999997599989997 Q gi|254781141|r 93 TKDPAQRENFFKNLFRIGNILGFQKEEMV 121 (196) Q Consensus 93 ~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~ 121 (196) .+|++.++.|..+|+.+...+||.-=+|. T Consensus 142 ~~~~~~R~~Fi~siv~~l~~~~fDGIDiD 170 (347) T d1itxa1 142 AATAATREVFANSAVDFLRKYNFDGVDLD 170 (347) T ss_dssp HTSHHHHHHHHHHHHHHHHHHTCSEEEEE T ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 33888999999999999998389807874 No 17 >d1ngra_ a.77.1.2 (A:) p75 low affinity neurotrophin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=21.66 E-value=19 Score=13.57 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=18.2 Q ss_pred HHHHHHHHHHCCCCHHHHHHHC Q ss_conf 9999999997599989997205 Q gi|254781141|r 103 FKNLFRIGNILGFQKEEMVDIT 124 (196) Q Consensus 103 ~~~i~~~~~~~Gfs~eEi~~v~ 124 (196) ..+.+..|..+||+..+|..+. T Consensus 21 g~dWr~LA~~LGl~~~~I~~i~ 42 (85) T d1ngra_ 21 GDTWRHLAGELGYQPEHIDSFT 42 (85) T ss_dssp TTHHHHHHHHTTCCHHHHHHHH T ss_pred CCCHHHHHHHCCCCHHHHHHHH T ss_conf 7879999989397999998987 Done!