RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781141|ref|YP_003065554.1| hypothetical protein
CLIBASIA_05225 [Candidatus Liberibacter asiaticus str. psy62]
         (196 letters)



>gnl|CDD|37885 KOG2674, KOG2674, KOG2674, Cysteine protease required for autophagy
           - Apg4p/Aut2p [Cytoskeleton, Intracellular trafficking,
           secretion, and vesicular transport].
          Length = 409

 Score = 28.0 bits (62), Expect = 1.9
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 15  LAQ-LINHHIPDDSSPTLEKTYPETYHRI 42
           LAQ LI  H+  D   T EK   E Y +I
Sbjct: 107 LAQALICRHLGRDWRWTDEKRLEEEYLKI 135


>gnl|CDD|33400 COG3600, GepA, Uncharacterized phage-associated protein [Function
           unknown].
          Length = 154

 Score = 26.8 bits (59), Expect = 4.0
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 107 FRIGN-ILGFQKEEMVDITDHRLLSLAYYAQ---IGLQSQKLSEDAYHKIRHKPFVNITT 162
             I N  L    E  + +T  +L  L YYA    + +  + L ++     +H P +    
Sbjct: 8   RAIANWFLDKADELDIPVTPLKLQKLLYYAHGWFLAVTGRPLFDEKIEAWKHGPVIPSLY 67

Query: 163 NKAKNHRRITSQEKAIQKLYQTGSLY 188
           N  K +   +  E+   +    G+  
Sbjct: 68  NAFKQYGSNSIDERLPVRGLSNGNAL 93


>gnl|CDD|146520 pfam03934, GspK, General secretion pathway protein K.  Members of
          this family are involved in the general secretion
          pathway. The family includes proteins such as ExeK,
          PulK, OutX and XcpX.
          Length = 282

 Score = 26.9 bits (60), Expect = 4.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 2  QNQAKILAQSAEALAQLI 19
          + QA   A  AEALA+ I
Sbjct: 15 RQQAYWYALGAEALARQI 32


>gnl|CDD|133341 cd04141, Rit_Rin_Ric, Rit/Rin/Ric subfamily.  Rit (Ras-like
          protein in all tissues), Rin (Ras-like protein in
          neurons) and Ric (Ras-related protein which interacts
          with calmodulin) form a subfamily with several unique
          structural and functional characteristics.   These
          proteins all lack a the C-terminal CaaX lipid-binding
          motif typical of Ras family proteins, and Rin and Ric
          contain calmodulin-binding domains.  Rin, which is
          expressed only in neurons, induces neurite outgrowth in
          rat pheochromocytoma cells through its association with
          calmodulin and its activation of endogenous Rac/cdc42. 
          Rit, which is ubiquitously expressed in mammals,
          inhibits growth-factor withdrawl-mediated apoptosis and
          induces neurite extension in pheochromocytoma cells.
          Rit and Rin are both able to form a ternary complex
          with PAR6, a cell polarity-regulating protein, and
          Rac/cdc42.  This ternary complex is proposed to have
          physiological function in processes such as
          tumorigenesis.  Activated Ric is likely to signal in
          parallel with the Ras pathway or stimulate the Ras
          pathway at some upstream point, and binding of
          calmodulin to Ric may negatively regulate Ric activity.
          Length = 172

 Score = 26.3 bits (58), Expect = 5.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 17 QLINHHIPDDSSPTLEKTY 35
          Q I+H  PD   PT+E  Y
Sbjct: 21 QFISHSFPDYHDPTIEDAY 39


>gnl|CDD|146096 pfam03289, Pox_I1, Poxvirus protein I1. 
          Length = 312

 Score = 26.2 bits (58), Expect = 5.7
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 108 RIGNILGFQKEEMVDI--TDHRLLSLAYYAQIGLQSQKLSEDAYHKIRH 154
           +I +ILG +  ++     T H +L  +  + +   S+K  ED Y +I  
Sbjct: 235 KIADILGIETVKIGSFIYTKHSMLVSSISSNVDRYSKKFQEDFYERIAE 283


>gnl|CDD|37686 KOG2475, KOG2475, KOG2475, CDC45 (cell division cycle 45)-like
           protein [Replication, recombination and repair].
          Length = 587

 Score = 26.4 bits (58), Expect = 5.8
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 13/77 (16%)

Query: 128 LLSLAYYAQIGLQSQ----KLSEDAY---------HKIRHKPFVNITTNKAKNHRRITSQ 174
              L + A +GL SQ    K++E  Y         H  R  P      N   +  RIT +
Sbjct: 228 NNDLLWLAIVGLTSQMIHKKITEMYYQRCVDLLQDHVNRLTPKNIDNQNTLDDCLRITFE 287

Query: 175 EKAIQKLYQTGSLYDSL 191
            +    LY+  SL+DS+
Sbjct: 288 RELRLMLYRHWSLFDSM 304


>gnl|CDD|36892 KOG1679, KOG1679, KOG1679, Enoyl-CoA hydratase [Lipid transport and
           metabolism].
          Length = 291

 Score = 25.7 bits (56), Expect = 9.0
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 28  SPTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNI---AKELDSEILEKKLIA 81
              L K    T   +       L ++NH VE     D     A EL  EIL +  IA
Sbjct: 181 GVALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIA 237


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0774    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,305,742
Number of extensions: 117474
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 16
Length of query: 196
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 107
Effective length of database: 4,340,536
Effective search space: 464437352
Effective search space used: 464437352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)