RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781141|ref|YP_003065554.1| hypothetical protein
CLIBASIA_05225 [Candidatus Liberibacter asiaticus str. psy62]
(196 letters)
>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein;
Provisional.
Length = 586
Score = 32.8 bits (75), Expect = 0.054
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 15/95 (15%)
Query: 2 QNQAKILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETGR 61
+ + L + A L++ + H PD S + + P TY+ + + R L I++ + G+
Sbjct: 11 KGERHELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHER---LAIVD--LSDGK 65
Query: 62 NP-----DNIAKELDSEI-----LEKKLIAENQQL 86
P + +A + EI + +L E +
Sbjct: 66 QPLLDDDETVALMQNGEIYNHWEIRPELEKEGYKF 100
>gnl|CDD|183608 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 29.2 bits (66), Expect = 0.71
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 94 KDPAQRENFFKNLFRIG 110
KD A R +FFKNL +
Sbjct: 336 KDDALRRSFFKNLRLMA 352
>gnl|CDD|179524 PRK03001, PRK03001, M48 family peptidase; Provisional.
Length = 283
Score = 27.7 bits (62), Expect = 2.1
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Query: 32 EKTYPETYHRIRYLRQKA------LNII-----NHFVETGRNPDNIAKELDSEILE 76
E T P+ Y +R L Q+A + +I N F TGRNP++ A + IL
Sbjct: 63 ENTAPQFYRMVRELAQRAGLPMPKVYLINEDQPNAFA-TGRNPEHAAVAATTGILR 117
>gnl|CDD|162145 TIGR00985, 3a0801s04tom, mitochondrial import receptor subunit
translocase of outer membrane 20 kDa subunit.
Length = 148
Score = 27.6 bits (61), Expect = 2.4
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 91 PQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQ----IGLQSQKLSE 146
P DP+++E FF ++G L Q + + H +L Y Q + + Q L E
Sbjct: 78 PDPTDPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIYQQTLPE 137
Query: 147 DAYHKIRHK 155
+ + +
Sbjct: 138 PIFRLMIAQ 146
>gnl|CDD|148204 pfam06454, DUF1084, Protein of unknown function (DUF1084). This
family consists of several hypothetical plant specific
proteins of unknown function.
Length = 281
Score = 27.0 bits (60), Expect = 3.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 114 GFQKEEMVDITDHRLLSLAYY 134
F K+ +D+ DH +L+L YY
Sbjct: 230 AFDKKADLDVLDHPILNLIYY 250
>gnl|CDD|177511 PHA03061, PHA03061, putative DNA-binding virion core protein;
Provisional.
Length = 311
Score = 26.9 bits (60), Expect = 3.9
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 108 RIGNILGFQKEEMVDI--TDHRLLSLAYYAQIGLQSQKLSEDAYHKIRH 154
RI +ILG + ++ T H +L A + + S+K E Y I
Sbjct: 234 RIADILGIETVKLGSFIYTKHSMLVNAISSNVDRYSKKFQESFYEDIAE 282
>gnl|CDD|140328 PTZ00307, PTZ00307, ethanolamine phosphotransferase; Provisional.
Length = 417
Score = 26.7 bits (59), Expect = 4.0
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 13 EALAQLINHHIPDDSSPTLEK-TYPETYHRI--RYLRQKALNIINHFVETGRNPDNI 66
+L L N +IP P L+K Y T I RY+ Q+ N I + V P+ I
Sbjct: 10 ISLNPLENEYIPPAYLPNLKKYKYSSTDSSIISRYVLQRYWNFIVNLVPMTVAPNCI 66
>gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional.
Length = 175
Score = 26.5 bits (59), Expect = 4.3
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 11/48 (22%)
Query: 72 SEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEE 119
+ L +KL +E L A R N K LGF KE+
Sbjct: 21 ARALAEKLREAGYPVEVL----DGDAVRTNLSKG-------LGFSKED 57
>gnl|CDD|179744 PRK04132, PRK04132, replication factor C small subunit;
Provisional.
Length = 846
Score = 26.7 bits (59), Expect = 4.3
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Query: 64 DNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDI 123
+ +AK EI EK I ++ LE++ +R+ KN +I LG E+ ++
Sbjct: 414 NEVAKRRK-EIAEKTGIRADRILEYI------KGKRKPSLKNYIKIAKALGINLEKTIEA 466
Query: 124 TDHRLLSLAY--YAQIG 138
R+ + Y YA+IG
Sbjct: 467 M--RIFAKKYSSYAEIG 481
>gnl|CDD|179282 PRK01345, PRK01345, heat shock protein HtpX; Provisional.
Length = 317
Score = 26.5 bits (59), Expect = 4.5
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 12/47 (25%)
Query: 32 EKTYPETYHRIRYLRQKA------LNII-----NHFVETGRNPDNIA 67
E++ PE Y +R L ++A + II N F TGRNP+N A
Sbjct: 63 ERSAPELYRMVRDLARRAGLPMPKVYIIDNPQPNAFA-TGRNPENAA 108
>gnl|CDD|181369 PRK08304, PRK08304, stage V sporulation protein AD; Validated.
Length = 337
Score = 26.3 bits (59), Expect = 5.5
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 52 IINHFVETGRNPD 64
I HF +TGR+P+
Sbjct: 214 IQQHFKDTGRSPE 226
>gnl|CDD|162178 TIGR01056, topB, DNA topoisomerase III, bacteria and conjugative
plasmid. This model describes topoisomerase III from
bacteria and its equivalents encoded on plasmids. The
gene is designated topB if found in the bacterial
chromosome, traE on conjugative plasmid RP4, etc. These
enzymes are involved in the control of DNA topology. DNA
topoisomerase III belongs to the type I topoisomerases,
which are ATP-independent.
Length = 660
Score = 26.0 bits (57), Expect = 7.0
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 43 RYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENF 102
R L++ ++ + + R + IA+E IL+ + + ++ L+ + +
Sbjct: 89 RILKENKVDEVVIATDPDREGELIARE----ILDYLKVTDKVTIKRLWISSLVDSSIRKA 144
Query: 103 FKNL 106
FKNL
Sbjct: 145 FKNL 148
>gnl|CDD|148831 pfam07451, SpoVAD, Stage V sporulation protein AD (SpoVAD). This
family contains the bacterial stage V sporulation
protein AD (SpoVAD), which is approximately 340 residues
long. This is one of six proteins encoded by the spoVA
operon, which is transcribed exclusively in the
forespore at about the time of dipicolinic acid (DPA)
synthesis in the mother cell. The functions of the
proteins encoded by the spoVA operon are unknown, but it
has been suggested they are involved in DPA transport
during sporulation.
Length = 329
Score = 25.6 bits (57), Expect = 8.8
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 11/38 (28%)
Query: 52 IINHFVETGRNPD-----------NIAKELDSEILEKK 78
I HF +TGR+P + +E+ ++L++K
Sbjct: 209 IEQHFQDTGRDPSDYDLIVTGDLGKVGREIAEDLLKEK 246
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.133 0.369
Gapped
Lambda K H
0.267 0.0525 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,191,804
Number of extensions: 199149
Number of successful extensions: 450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 34
Length of query: 196
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 108
Effective length of database: 4,092,969
Effective search space: 442040652
Effective search space used: 442040652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)