RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781141|ref|YP_003065554.1| hypothetical protein
CLIBASIA_05225 [Candidatus Liberibacter asiaticus str. psy62]
         (196 letters)



>2wb6_A AFV1-102; archaeal virus, viral protein; 1.95A {Acidianus
           filamentous virus 1}
          Length = 130

 Score = 35.5 bits (81), Expect = 0.008
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 9/113 (7%)

Query: 70  LDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEE---MVDITDH 126
           L+S  L KK  +EN   + +  + K       F  ++F +   LG   E+   M+ ++  
Sbjct: 11  LESTSLYKKAGSENLYFQGIVDKNKIVIPMSEFLDSMFLVIEKLGVHAEKKGSMIFLSSE 70

Query: 127 RLLSLAYYAQIGLQSQKLSEDAYH-KIRHKPFVNITTNKAKNHRRITSQEKAI 178
           R + LA + Q+G     +  D YH K+    F+ I T KAK+   +   EK +
Sbjct: 71  R-VKLADWKQLG----AMCSDCYHCKLPLSSFIEIVTRKAKDKFLVMYNEKEV 118


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 34.2 bits (77), Expect = 0.019
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 15/38 (39%)

Query: 2  QNQA-KILAQSAEALAQLINHHIPDDSSP------TLE 32
          + QA K L  S +  A        DDS+P      T+E
Sbjct: 18 EKQALKKLQASLKLYA--------DDSAPALAIKATME 47



 Score = 30.7 bits (68), Expect = 0.22
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 6/25 (24%)

Query: 175 EK-AIQKLYQTGSLY--DS---LEI 193
           EK A++KL  +  LY  DS   L I
Sbjct: 18  EKQALKKLQASLKLYADDSAPALAI 42


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.8 bits (77), Expect = 0.029
 Identities = 30/164 (18%), Positives = 48/164 (29%), Gaps = 74/164 (45%)

Query: 11  SAEALAQLI---NHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIIN---HFVETG---- 60
           + E +   +   N H+P                     +Q  ++++N   + V +G    
Sbjct: 345 TQEQVQDYVNKTNSHLPAG-------------------KQVEISLVNGAKNLVVSGPPQS 385

Query: 61  --------RNPDNIAKELD-SEIL--EKKLIAENQQL--------EHLFPQT----KDPA 97
                   R        LD S I   E+KL   N+ L          L P +    KD  
Sbjct: 386 LYGLNLTLRKAKA-PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444

Query: 98  QRENFFK-NLFRI---------------GNILGFQKEEMVD-IT 124
           +    F     +I               G+I     E +VD I 
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS----ERIVDCII 484



 Score = 31.5 bits (71), Expect = 0.13
 Identities = 33/163 (20%), Positives = 49/163 (30%), Gaps = 56/163 (34%)

Query: 14  ALAQLINHHIPDDSSPTLEK------TYPETYHRIRYLRQKALNIINH--F--VETGR-- 61
           ALA      +  ++  TL K       Y          ++      N   F  V  G   
Sbjct: 103 ALA----AKLLQENDTTLVKTKELIKNY---ITARIMAKRPFDKKSNSALFRAVGEGNAQ 155

Query: 62  ---------NPDNIAKELDSEI------LEKKLIAENQQLEHLFPQTKDPAQRENFF-KN 105
                    N D+  +EL  ++      L   LI  +   E L    +     E  F + 
Sbjct: 156 LVAIFGGQGNTDDYFEEL-RDLYQTYHVLVGDLIKFSA--ETLSELIRTTLDAEKVFTQG 212

Query: 106 LFRIGNILGF-QKEEMVDITDHRLLS------------LAYYA 135
           L    NIL + +        D+ LLS            LA+Y 
Sbjct: 213 L----NILEWLENPSNTPDKDY-LLSIPISCPLIGVIQLAHYV 250



 Score = 29.9 bits (67), Expect = 0.35
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 36/99 (36%)

Query: 58   ETGR--------NPDNIAKELDSEILE-------KK---LI------AENQQLEHLFPQT 93
            E GR        NP  +A     E L+       K+   L+       ENQQ    +   
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ----YVAA 1856

Query: 94   KDPAQRENFFKNLFRIGNILGFQKEEMVDITD-HRLLSL 131
             D        + L  + N+L F K + +DI +  + LSL
Sbjct: 1857 GD-------LRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888



 Score = 26.1 bits (57), Expect = 5.2
 Identities = 30/150 (20%), Positives = 44/150 (29%), Gaps = 75/150 (50%)

Query: 7   ILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNI 66
           ++  SAE L++LI      D+    EK +            + LNI+        NP   
Sbjct: 187 LIKFSAETLSELI--RTTLDA----EKVFT-----------QGLNILEWL----ENPS-- 223

Query: 67  AKELDSEILEKK--------LIAENQQLEHLFPQT-----KDPAQ-R------------- 99
               D + L           +I    QL H +  T       P + R             
Sbjct: 224 -NTPDKDYLLSIPISCPLIGVI----QLAH-YVVTAKLLGFTPGELRSYLKGATGHSQGL 277

Query: 100 ------------ENFFKN-------LFRIG 110
                       E+FF +       LF IG
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIG 307


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 31.7 bits (71), Expect = 0.11
 Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 57/156 (36%)

Query: 44   YLRQKALNIINHFVETG-RNPDNIAKELDSEILEKKLIAENQQLEH-LFPQTKDPAQREN 101
            ++   AL I+N  +  G RN DN+ K     ILE        Q E+ L+P          
Sbjct: 1392 WMMNGALQILNSGIIPGNRNADNVDK-----ILE--------QFEYVLYPS--------- 1429

Query: 102  FFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYA--QIGLQSQKLSED----AYHKIRHK 155
              K L          K + V     R +S+  +   Q G Q+  +  D    A  + R+ 
Sbjct: 1430 --KTL----------KTDGV-----RAVSITSFGFGQKGGQAIVVHPDYLYGAITEDRYN 1472

Query: 156  PFVNITTNKAKNHRRITSQEKAIQKLYQTGSLYDSL 191
             +V           +++++EK+  K +  G +Y+ L
Sbjct: 1473 EYV----------AKVSAREKSAYKFFHNGMIYNKL 1498



 Score = 28.6 bits (63), Expect = 1.0
 Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 46/137 (33%)

Query: 27   SSPTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQL 86
            +SP L   Y     R R L  +   I           D +  EL++  LE + I    Q 
Sbjct: 1240 ASPNLNMKY-----RKRQLVTREAQI----------KDWVENELEALKLEAEEIPSEDQN 1284

Query: 87   EHLFPQTKD----------PAQRE---NFFKNLFRIGNILGFQKEEMVDITDHRLLSLAY 133
            E L  +T++           AQ++   +F+K   RI  + G               +LA 
Sbjct: 1285 EFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRG---------------ALAT 1329

Query: 134  YAQIGLQSQKLSEDAYH 150
            Y   GL    L   ++H
Sbjct: 1330 Y---GLTIDDLGVASFH 1343


>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
          Length = 276

 Score = 27.4 bits (60), Expect = 2.1
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 44  YLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFF 103
            L       +   V    + +  A EL + +  K ++A+N   +H F  T   +     F
Sbjct: 193 LLESYIKKELGEDVTIISSAEETAIELSTILQHKGILADNLNPKHRFFTTGSVSS----F 248

Query: 104 KNLFRIGNILGFQKE-EMVDI 123
           +++      LG+Q   + VD+
Sbjct: 249 EHIAER--WLGYQISVDCVDL 267


>2fl8_A Baseplate structural protein GP10; bacteriophage T4, tail,
           evolution, structural comparisons, virus/viral protein
           complex; 1.20A {Enterobacteria phage T4} PDB: 2fl9_A
          Length = 602

 Score = 26.0 bits (57), Expect = 5.1
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 17/84 (20%)

Query: 109 IGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRH----KPFVNITTNK 164
           +G +L   K+E++D TD+  +S           Q    D    +      K         
Sbjct: 390 LGTLL--TKDEIIDETDNLYVS-----------QGPGVDISGDVNLTDFDKIGWPNVEAV 436

Query: 165 AKNHRRITSQEKAIQKLYQTGSLY 188
               R   +       +Y  G++Y
Sbjct: 437 QSYQREFNAVSNIFDTIYPIGTIY 460


>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
           streptolydigin, antibiotic, transcription regulation;
           HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
           PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
           2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3dxj_D* 3eql_D*
           1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
          Length = 1524

 Score = 25.5 bits (55), Expect = 7.6
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 12  AEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDN 65
           AEA+ QL+     +     L +         R   +K L ++  F+++G  P+ 
Sbjct: 458 AEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLEVVRAFLDSGNRPEW 511


>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural
           genomics, center for structural genomics of infec
           diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1
           biovar eltor} PDB: 3ect_A*
          Length = 195

 Score = 25.7 bits (56), Expect = 8.1
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 71  DSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLF-RIGN 111
            +EI   +  A   +L+    Q+ D A+R    + LF  +G+
Sbjct: 22  SAEIEALRSQA--GRLKLEINQSLDEAERYALQRELFGHLGH 61


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,642,274
Number of extensions: 74650
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 26
Length of query: 196
Length of database: 5,693,230
Length adjustment: 87
Effective length of query: 109
Effective length of database: 3,584,002
Effective search space: 390656218
Effective search space used: 390656218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)