Query gi|254781142|ref|YP_003065555.1| hypothetical protein CLIBASIA_05230 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 82
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 22:33:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781142.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2r4f_A 3-hydroxy-3-methylglut 10.5 59 0.0017 14.6 -0.2 35 3-37 46-80 (85)
2 >2vi8_A Serine hydroxymethyltr 9.8 1.3E+02 0.004 12.8 3.8 28 1-28 28-55 (162)
3 >1xi4_A Clathrin heavy chain; 9.7 1.2E+02 0.0034 13.1 1.0 21 17-37 15-35 (49)
4 >1vf5_A Cytochrome B6; photosy 8.8 1.5E+02 0.0044 12.6 2.4 17 47-63 91-107 (111)
5 >3hrn_A Transient receptor pot 7.4 1.7E+02 0.0051 12.2 2.5 22 10-31 38-59 (64)
6 >3cpt_A Mitogen-activated prot 6.4 2E+02 0.0058 11.9 1.9 24 51-74 65-91 (143)
7 >3kp1_A D-ornithine aminomutas 6.2 2E+02 0.0059 11.9 1.3 10 55-64 132-141 (393)
8 >1u02_A Trehalose-6-phosphate 6.1 99 0.0029 13.4 -0.7 12 40-51 39-50 (76)
9 >2gm5_A Transposon gamma-delta 5.7 2.2E+02 0.0064 11.7 1.9 38 23-60 75-112 (139)
10 >1pp9_C Cytochrome B; cytochro 5.4 2.3E+02 0.0067 11.6 1.6 10 47-56 85-94 (101)
No 1
>>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... (A:1-85)
Probab=10.50 E-value=59 Score=14.61 Aligned_cols=35 Identities=29% Similarity=0.226 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 54113779999998768778999999986277631
Q gi|254781142|r 3 KSESSFADMERHIINRRQSLGSLLITVLKNARVPI 37 (82)
Q Consensus 3 ksessfadmerhiinrrqslgsllitvlknarvpi 37 (82)
+-|+...|.+|-+--||+-+...+.+-+.-...|.
T Consensus 46 ~LE~~L~D~~RAV~IRR~~i~~~~~~~~~l~~LP~ 80 (85)
T 2r4f_A 46 KLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPY 80 (85)
T ss_dssp GHHHHSSSHHHHHHHHHHHHHHHSSSTTGGGGSCC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHCCC
T ss_conf 68877178788999999999986188650320997
No 2
>>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* 2vmr_A* 2vms_A* 2vmt_A* 2vmu_A* 2vmq_A* ... (A:1-32,A:276-405)
Probab=9.79 E-value=1.3e+02 Score=12.76 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9654113779999998768778999999
Q gi|254781142|r 1 MIKSESSFADMERHIINRRQSLGSLLIT 28 (82)
Q Consensus 1 miksessfadmerhiinrrqslgsllit 28 (82)
||-||.+|...-..++.--+.|...|..
T Consensus 28 lIaSEpeFk~Ya~qVv~NAk~La~~L~~ 55 (162)
T 2vi8_A 28 LIASEDDFKAYAKRVVDNAKRLASALQN 55 (162)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8647837899999999988899999864
No 3
>>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} (A:952-1000)
Probab=9.71 E-value=1.2e+02 Score=13.11 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCH
Q ss_conf 768778999999986277631
Q gi|254781142|r 17 NRRQSLGSLLITVLKNARVPI 37 (82)
Q Consensus 17 nrrqslgsllitvlknarvpi 37 (82)
.|||-.....-|.|-....|-
T Consensus 15 ~RrqlIDQVv~tAlpEs~~pe 35 (49)
T 1xi4_A 15 YRRPLIDQVVQTALSETQDPE 35 (49)
T ss_pred HHHHHHHHHHHHCCCCCCCHH
T ss_conf 688999999996178879879
No 4
>>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} (A:1-111)
Probab=8.84 E-value=1.5e+02 Score=12.55 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 57999999999999999
Q gi|254781142|r 47 LTMIKFLFLHMIRTLID 63 (82)
Q Consensus 47 ltmikflflhmirtlid 63 (82)
--|+-.+++||.|.+..
T Consensus 91 s~m~~~i~lHm~R~~~~ 107 (111)
T 1vf5_A 91 SMMVLMMILHVFRVYLT 107 (111)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 68988779998199996
No 5
>>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A (A:)
Probab=7.43 E-value=1.7e+02 Score=12.21 Aligned_cols=22 Identities=45% Similarity=0.554 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998768778999999986
Q gi|254781142|r 10 DMERHIINRRQSLGSLLITVLK 31 (82)
Q Consensus 10 dmerhiinrrqslgsllitvlk 31 (82)
.|||.-..||..+|.+|-.+.+
T Consensus 38 ~meraKlkrre~m~klLd~i~e 59 (64)
T 3hrn_A 38 IMERAKLKRREVLGRLLDGVAE 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899998889999888788876
No 6
>>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} (A:)
Probab=6.38 E-value=2e+02 Score=11.92 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHH---HCCCCCCHHH
Q ss_conf 99999999999997---2577650144
Q gi|254781142|r 51 KFLFLHMIRTLIDQ---VGMGKNRRIY 74 (82)
Q Consensus 51 kflflhmirtlidq---vgmgknrriy 74 (82)
+--|+--..+-.|| .|+|||+.|-
T Consensus 65 ~~~~lsTf~~a~dQ~sKLglGknKsIi 91 (143)
T 3cpt_A 65 RPGFLSTFALATDQGSKLGLSKNKSII 91 (143)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 630787798887545024898864899
No 7
>>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM); HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A* (A:63-455)
Probab=6.20 E-value=2e+02 Score=11.86 Aligned_cols=10 Identities=50% Similarity=0.966 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999997
Q gi|254781142|r 55 LHMIRTLIDQ 64 (82)
Q Consensus 55 lhmirtlidq 64 (82)
..|+||++||
T Consensus 132 INm~RtfvDq 141 (393)
T 3kp1_A 132 INMIRSFIDA 141 (393)
T ss_dssp BCHHHHHHHH
T ss_pred CCHHHHHHHH
T ss_conf 6424458889
No 8
>>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI, protein structure initiative; 1.92A {Thermoplasma acidophilum} (A:83-158)
Probab=6.09 E-value=99 Score=13.44 Aligned_cols=12 Identities=17% Similarity=0.276 Sum_probs=6.3
Q ss_pred HCCCCCHHHHHH
Q ss_conf 012541457999
Q gi|254781142|r 40 LMGQRNQLTMIK 51 (82)
Q Consensus 40 lmgqrnqltmik 51 (82)
+|++++.-+.+|
T Consensus 39 l~~~~~r~~l~k 50 (76)
T 1u02_A 39 LXGADXKPKLRS 50 (76)
T ss_dssp TSCSTTHHHHHH
T ss_pred CCHHHHHHHHHH
T ss_conf 000456999999
No 9
>>2gm5_A Transposon gamma-delta resolvase; site specific recombination; 2.10A {Escherichia coli} PDB: 2rsl_A 1gdr_A 1ght_A 1hx7_A (A:)
Probab=5.69 E-value=2.2e+02 Score=11.70 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=25.7
Q ss_pred HHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999998627763143012541457999999999999
Q gi|254781142|r 23 GSLLITVLKNARVPIKILMGQRNQLTMIKFLFLHMIRT 60 (82)
Q Consensus 23 gsllitvlknarvpikilmgqrnqltmikflflhmirt 60 (82)
-..++..++...|.+.++-.+-...+...-+++.|.-.
T Consensus 75 ~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~ 112 (139)
T 2gm5_A 75 XIQLIKEFDAQGVSIRFIDDGISTDSYIGKXVVTILSA 112 (139)
T ss_dssp HHHHHHHHHHTTCEEEETTTTEETTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999714864000112324568204799999999
No 10
>>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} (C:108-208)
Probab=5.36 E-value=2.3e+02 Score=11.58 Aligned_cols=10 Identities=50% Similarity=1.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q ss_conf 5799999999
Q gi|254781142|r 47 LTMIKFLFLH 56 (82)
Q Consensus 47 ltmikflflh 56 (82)
++|+..+|||
T Consensus 85 ~~~iHllFLH 94 (101)
T 1pp9_C 85 IAMVHLLFLH 94 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999870
Done!