RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781142|ref|YP_003065555.1| hypothetical protein
CLIBASIA_05230 [Candidatus Liberibacter asiaticus str. psy62]
         (82 letters)



>gnl|CDD|180996 PRK07483, PRK07483, hypothetical protein; Provisional.
          Length = 443

 Score = 26.1 bits (58), Expect = 2.0
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 5/20 (25%)

Query: 13  RHIINRRQS-----LGSLLI 27
           RH I RRQS     LG+L I
Sbjct: 123 RHFIARRQSYHGNTLGALAI 142


>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional.
          Length = 421

 Score = 25.9 bits (57), Expect = 2.4
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 12  ERHIINRRQSLGSLLITVLKNARVPIKILMGQRNQLTMIKFLF 54
           E  +  R   LG+ L+ VL+ A+     ++  R + +M+   F
Sbjct: 316 EEKLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEF 358


>gnl|CDD|177561 PHA03232, PHA03232, DNA packaging protein UL32; Provisional.
          Length = 586

 Score = 25.0 bits (55), Expect = 4.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 21  SLGSLLITVLKNAR 34
           +LG +L T LK+AR
Sbjct: 391 ALGPVLATTLKHAR 404


>gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional.
          Length = 549

 Score = 24.8 bits (54), Expect = 4.8
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 26  LITVLKNARVPIKILMGQRNQLTMIKF 52
           LIT  K    P+KI++   ++L MIKF
Sbjct: 434 LITAKKYDL-PVKIIIYNNSKLGMIKF 459


>gnl|CDD|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase.
          Length = 597

 Score = 24.6 bits (53), Expect = 6.4
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)

Query: 16  INRRQSLGSLLITVLKNARVP 36
           I+RRQ LGSLL+ V+ N  VP
Sbjct: 126 IDRRQLLGSLLMPVM-NLYVP 145


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.329    0.140    0.379 

Gapped
Lambda     K      H
   0.267   0.0661    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,237,547
Number of extensions: 62955
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 10
Length of query: 82
Length of database: 5,994,473
Length adjustment: 51
Effective length of query: 31
Effective length of database: 4,892,465
Effective search space: 151666415
Effective search space used: 151666415
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.2 bits)