RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781142|ref|YP_003065555.1| hypothetical protein CLIBASIA_05230 [Candidatus Liberibacter asiaticus str. psy62] (82 letters) >gnl|CDD|180996 PRK07483, PRK07483, hypothetical protein; Provisional. Length = 443 Score = 26.1 bits (58), Expect = 2.0 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 5/20 (25%) Query: 13 RHIINRRQS-----LGSLLI 27 RH I RRQS LG+L I Sbjct: 123 RHFIARRQSYHGNTLGALAI 142 >gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional. Length = 421 Score = 25.9 bits (57), Expect = 2.4 Identities = 11/43 (25%), Positives = 21/43 (48%) Query: 12 ERHIINRRQSLGSLLITVLKNARVPIKILMGQRNQLTMIKFLF 54 E + R LG+ L+ VL+ A+ ++ R + +M+ F Sbjct: 316 EEKLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEF 358 >gnl|CDD|177561 PHA03232, PHA03232, DNA packaging protein UL32; Provisional. Length = 586 Score = 25.0 bits (55), Expect = 4.1 Identities = 8/14 (57%), Positives = 11/14 (78%) Query: 21 SLGSLLITVLKNAR 34 +LG +L T LK+AR Sbjct: 391 ALGPVLATTLKHAR 404 >gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional. Length = 549 Score = 24.8 bits (54), Expect = 4.8 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%) Query: 26 LITVLKNARVPIKILMGQRNQLTMIKF 52 LIT K P+KI++ ++L MIKF Sbjct: 434 LITAKKYDL-PVKIIIYNNSKLGMIKF 459 >gnl|CDD|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase. Length = 597 Score = 24.6 bits (53), Expect = 6.4 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%) Query: 16 INRRQSLGSLLITVLKNARVP 36 I+RRQ LGSLL+ V+ N VP Sbjct: 126 IDRRQLLGSLLMPVM-NLYVP 145 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.329 0.140 0.379 Gapped Lambda K H 0.267 0.0661 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 1,237,547 Number of extensions: 62955 Number of successful extensions: 139 Number of sequences better than 10.0: 1 Number of HSP's gapped: 139 Number of HSP's successfully gapped: 10 Length of query: 82 Length of database: 5,994,473 Length adjustment: 51 Effective length of query: 31 Effective length of database: 4,892,465 Effective search space: 151666415 Effective search space used: 151666415 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 50 (23.2 bits)