RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781142|ref|YP_003065555.1| hypothetical protein
CLIBASIA_05230 [Candidatus Liberibacter asiaticus str. psy62]
         (82 letters)



>d1dqaa4 d.179.1.1 (A:462-586,A:704-870) Substrate-binding domain
          of HMG-CoA reductase {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 292

 Score = 24.8 bits (54), Expect = 1.9
 Identities = 9/36 (25%), Positives = 13/36 (36%)

Query: 5  ESSFADMERHIINRRQSLGSLLITVLKNARVPIKIL 40
          E+     ER +  RRQ L   L        +P +  
Sbjct: 21 ETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDY 56


>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
           {Carboxydothermus hydrogenoformans [TaxId: 129958]}
          Length = 633

 Score = 22.5 bits (48), Expect = 9.7
 Identities = 5/14 (35%), Positives = 6/14 (42%)

Query: 10  DMERHIINRRQSLG 23
            +   I  RR  LG
Sbjct: 617 KLLAAINERRAGLG 630


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.140    0.379 

Gapped
Lambda     K      H
   0.267   0.0413    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 269,621
Number of extensions: 9881
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 3
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)