Query gi|254781143|ref|YP_003065556.1| hypothetical protein CLIBASIA_05235 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 35 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed Jun 1 01:15:29 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781143.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2w6a_A ARF GTPase-activating p 23.1 41 0.0017 15.3 2.4 29 5-33 26-54 (63) 2 2kk7_A V-type ATP synthase sub 8.8 1.2E+02 0.005 13.2 2.0 26 3-28 16-41 (52) 3 1yar_O Proteasome activator pr 4.3 2.2E+02 0.0094 11.9 2.0 20 14-33 187-206 (237) 4 2k84_A P9; HOST-virus interact 3.9 1.8E+02 0.0077 12.3 0.2 13 6-18 6-18 (30) 5 2a26_A Calcyclin-binding prote 3.5 2.7E+02 0.011 11.6 0.7 11 7-17 38-48 (50) 6 1ysm_A Calcyclin-binding prote 3.1 2.9E+02 0.012 11.4 0.6 14 5-18 35-48 (77) 7 3lcn_C MRNA transport factor G 2.3 3.7E+02 0.016 10.9 1.7 15 19-33 5-19 (29) 8 1l4a_E Synaphin A; snare, snar 2.2 3.2E+02 0.014 11.2 -0.1 26 4-29 35-60 (79) 9 2v52_M MKL/myocardin-like prot 1.9 4.5E+02 0.019 10.5 0.3 13 19-31 2-14 (32) 10 2elm_A Zinc finger protein 406 1.9 4.2E+02 0.018 10.6 0.1 12 3-14 25-36 (37) No 1 >2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus} Probab=23.10 E-value=41 Score=15.29 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=23.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 32112331034543108999999765531 Q gi|254781143|r 5 RAKIQAEINIKKQQADAEYLLKKKLQSQQ 33 (35) Q Consensus 5 rakiqaeinikkqqadaeyllkkklqsqq 33 (35) .||||--++..++..|.--++.+++++-| T Consensus 26 EakIQqLmkvN~~ls~Elr~mQ~~~~~Lq 54 (63) T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQ 54 (63) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999997867699999999999999 No 2 >2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii} Probab=8.84 E-value=1.2e+02 Score=13.17 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=18.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11321123310345431089999997 Q gi|254781143|r 3 LKRAKIQAEINIKKQQADAEYLLKKK 28 (35) Q Consensus 3 lkrakiqaeinikkqqadaeyllkkk 28 (35) |..|+++|..-+..-|...+-+|+|- T Consensus 16 leDA~~~A~kI~~EAqkEk~~il~KA 41 (52) T 2kk7_A 16 LDDAKAEANKIISEAEAEKAKILEKA 41 (52) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99888689999989998899999998 No 3 >1yar_O Proteasome activator protein PA26; proteasome 20S, PA26 proteasome activator 11S, hydrolase/hydrolase activator complex; 1.90A {Trypanosoma brucei} SCOP: a.24.8.1 PDB: 1ya7_O 1yau_O 1fnt_c 3jse_O 3jrm_O 3jtl_O 1z7q_c 3ipm_O Probab=4.32 E-value=2.2e+02 Score=11.90 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=14.6 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 34543108999999765531 Q gi|254781143|r 14 IKKQQADAEYLLKKKLQSQQ 33 (35) Q Consensus 14 ikkqqadaeyllkkklqsqq 33 (35) ..-||-|+..|||-.|..-| T Consensus 187 lEL~QiDaDallKvELsa~q 206 (237) T 1yar_O 187 LELRQIDADFMLKVELATTH 206 (237) T ss_dssp HHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHCHHHHHHHHHHHHH T ss_conf 99996168999998899999 No 4 >2k84_A P9; HOST-virus interaction, metal-binding, virion, zinc, zinc-finger; NMR {Synthetic} Probab=3.92 E-value=1.8e+02 Score=12.30 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=8.2 Q ss_pred HHHHHHHHHHHHH Q ss_conf 2112331034543 Q gi|254781143|r 6 AKIQAEINIKKQQ 18 (35) Q Consensus 6 akiqaeinikkqq 18 (35) .+++.|.|||.|+ T Consensus 6 sqmkqEY~vk~q~ 18 (30) T 2k84_A 6 SEIKKEYNVKEKD 18 (30) T ss_dssp CSSSHHHHHTTTT T ss_pred HHHHHHHCHHHHH T ss_conf 9999996514441 No 5 >2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1 Probab=3.47 E-value=2.7e+02 Score=11.56 Aligned_cols=11 Identities=55% Similarity=0.594 Sum_probs=4.1 Q ss_pred HHHHHHHHHHH Q ss_conf 11233103454 Q gi|254781143|r 7 KIQAEINIKKQ 17 (35) Q Consensus 7 kiqaeinikkq 17 (35) ||+.||.-|-| T Consensus 38 kietEIknk~q 48 (50) T 2a26_A 38 KIETEIKNKMQ 48 (50) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999988873 No 6 >1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1 Probab=3.06 E-value=2.9e+02 Score=11.37 Aligned_cols=14 Identities=43% Similarity=0.593 Sum_probs=8.8 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 32112331034543 Q gi|254781143|r 5 RAKIQAEINIKKQQ 18 (35) Q Consensus 5 rakiqaeinikkqq 18 (35) .-||+.||.-|.|| T Consensus 35 k~KiEtEI~~k~qq 48 (77) T 1ysm_A 35 KSKIETELKNKMQQ 48 (77) T ss_dssp HHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999987642 No 7 >3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae} Probab=2.35 E-value=3.7e+02 Score=10.88 Aligned_cols=15 Identities=47% Similarity=0.554 Sum_probs=8.4 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 108999999765531 Q gi|254781143|r 19 ADAEYLLKKKLQSQQ 33 (35) Q Consensus 19 adaeyllkkklqsqq 33 (35) |..--|||||...|. T Consensus 5 askmkllkkkieeqr 19 (29) T 3lcn_C 5 ASKMKLLKKKIEEQR 19 (29) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 899999999999999 No 8 >1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Probab=2.17 E-value=3.2e+02 Score=11.18 Aligned_cols=26 Identities=35% Similarity=0.419 Sum_probs=16.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 13211233103454310899999976 Q gi|254781143|r 4 KRAKIQAEINIKKQQADAEYLLKKKL 29 (35) Q Consensus 4 krakiqaeinikkqqadaeyllkkkl 29 (35) |.+|+.+|-..-.|.--..|-+|||. T Consensus 35 kh~kmE~eRE~mRq~IRdKYgikKkv 60 (79) T 1l4a_E 35 KHRKMEEEREEMRQTIRDKYGLKKKV 60 (79) T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC--- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99989999999999899985225776 No 9 >2v52_M MKL/myocardin-like protein 1; structural protein/contractIle protein, structural protein, contractIle protein, nucleotide-binding; HET: LAB ATP; 1.45A {Mus musculus} Probab=1.89 E-value=4.5e+02 Score=10.52 Aligned_cols=13 Identities=46% Similarity=0.593 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHH Q ss_conf 1089999997655 Q gi|254781143|r 19 ADAEYLLKKKLQS 31 (35) Q Consensus 19 adaeyllkkklqs 31 (35) |..|-.||.|+.| T Consensus 2 arte~~lk~kirs 14 (32) T 2v52_M 2 ARTEDYLKRKIRS 14 (32) T ss_dssp CSCSHHHHHHHHT T ss_pred CCHHHHHHHHHHC T ss_conf 3278899999864 No 10 >2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=1.87 E-value=4.2e+02 Score=10.65 Aligned_cols=12 Identities=58% Similarity=0.614 Sum_probs=0.0 Q ss_pred CHHHHHHHHHHH Q ss_conf 113211233103 Q gi|254781143|r 3 LKRAKIQAEINI 14 (35) Q Consensus 3 lkrakiqaeini 14 (35) |||.-||..-|| T Consensus 25 lkrhviqkhs~i 36 (37) T 2elm_A 25 LKRHVIQKHSNI 36 (37) T ss_dssp HHHHHHHHTCCC T ss_pred HHHHHHHHHCCC T ss_conf 999999875335 Done!