BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781143|ref|YP_003065556.1| hypothetical protein CLIBASIA_05235 [Candidatus Liberibacter asiaticus str. psy62] (35 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|315122535|ref|YP_004063024.1| hypothetical protein CKC_03935 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495937|gb|ADR52536.1| hypothetical protein CKC_03935 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 637 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/33 (69%), Positives = 29/33 (87%) Query: 1 MELKRAKIQAEINIKKQQADAEYLLKKKLQSQQ 33 MELKRAKIQAEI++K QQ +AEYLLK+K + Q+ Sbjct: 605 MELKRAKIQAEISLKSQQIEAEYLLKEKERLQK 637 >gi|254781143|ref|YP_003065556.1| hypothetical protein CLIBASIA_05235 [Candidatus Liberibacter asiaticus str. psy62] gi|254040820|gb|ACT57616.1| hypothetical protein CLIBASIA_05235 [Candidatus Liberibacter asiaticus str. psy62] Length = 35 Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 35/35 (100%), Positives = 35/35 (100%) Query: 1 MELKRAKIQAEINIKKQQADAEYLLKKKLQSQQTL 35 MELKRAKIQAEINIKKQQADAEYLLKKKLQSQQTL Sbjct: 1 MELKRAKIQAEINIKKQQADAEYLLKKKLQSQQTL 35 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.310 0.123 0.290 Lambda K H 0.267 0.0394 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 157,571,402 Number of Sequences: 14124377 Number of extensions: 1751478 Number of successful extensions: 4620 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4618 Number of HSP's gapped (non-prelim): 2 length of query: 35 length of database: 4,842,793,630 effective HSP length: 9 effective length of query: 26 effective length of database: 4,715,674,237 effective search space: 122607530162 effective search space used: 122607530162 T: 11 A: 40 X1: 15 ( 6.7 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 75 (33.6 bits)