Query gi|254781144|ref|YP_003065557.1| hypothetical protein CLIBASIA_05240 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 76
No_of_seqs 101 out of 111
Neff 5.1
Searched_HMMs 33803
Date Wed Jun 1 22:10:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781144.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1vls_A TAR, aspartate recepto 44.7 15 0.00044 18.8 2.3 30 44-73 93-122 (146)
2 >2o03_A Probable zinc uptake r 42.0 30 0.0009 17.0 3.5 44 15-58 11-59 (131)
3 >2w57_A Ferric uptake regulati 31.0 42 0.0012 16.3 2.8 45 14-58 16-66 (85)
4 >3lm7_A Putative 4-hydroxy-2-o 27.8 37 0.0011 16.6 2.0 19 2-20 65-83 (249)
5 >2fe3_A Peroxide operon regula 25.7 58 0.0017 15.5 4.0 45 14-58 21-70 (88)
6 >2hsg_A Glucose-resistance amy 25.0 27 0.0008 17.3 0.9 23 50-72 4-28 (46)
7 >2asr_A Aspartate receptor; ch 24.9 60 0.0018 15.4 2.9 31 43-73 89-119 (142)
8 >3h5t_A Transcriptional regula 23.8 29 0.00085 17.2 0.9 23 49-71 10-34 (60)
9 >2k9s_A Arabinose operon regul 22.6 45 0.0013 16.1 1.7 18 50-67 25-42 (61)
10 >2qv6_A MJ0145, GTP cyclohydro 21.1 54 0.0016 15.7 1.9 24 2-25 82-105 (141)
11 >3eyy_A Putative iron uptake r 20.6 74 0.0022 14.9 4.9 44 15-58 3-50 (69)
No 1
>>1vls_A TAR, aspartate receptor; chemotaxis, bacterial chemotaxis receptor, unbound; 1.85A {Salmonella typhimurium} (A:)
Probab=44.70 E-value=15 Score=18.76 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHCCCCHH
Q ss_conf 899999999999980898878850698854
Q gi|254781144|r 44 TTHLYNGIARLAEAVGVQNVNEYFNNPDSE 73 (76)
Q Consensus 44 ~~n~yntl~~~~e~aG~k~~~~ff~dP~~~ 73 (76)
-+.|+++|+++++...=.+.+.||.-|.+.
T Consensus 93 Y~~y~~~L~~l~~~l~~g~~~~f~~~ptq~ 122 (146)
T 1vls_A 93 YQRYQAALAELIQFLDNGNMDAYFAQPTQG 122 (146)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHCCCHH
T ss_conf 999999999999998869999997377088
No 2
>>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, gene regulation; 2.70A {Mycobacterium tuberculosis} (A:)
Probab=41.97 E-value=30 Score=17.04 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHH-----HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 9999999999999-----9999960388888669899999999999980
Q gi|254781144|r 15 EKDIMMVSHLLAL-----QKEILATFGLNNPFVSTTHLYNGIARLAEAV 58 (76)
Q Consensus 15 ~qk~~~L~~i~~~-----Q~q~lq~~G~~nplV~~~n~yntl~~~~e~a 58 (76)
.+|.+.|.-+.+. -++++......+|=+++.-+|+||..+.+..
T Consensus 11 ~qR~~Il~~l~~~~~~~t~~ei~~~l~~~~~~i~~aTVYR~L~~L~~~g 59 (131)
T 2o03_A 11 RQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999808999999999999986288768288999999998733
No 3
>>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, DNA-binding; 2.60A {Vibrio cholerae} (A:1-85)
Probab=30.97 E-value=42 Score=16.28 Aligned_cols=45 Identities=9% Similarity=0.077 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHH------HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 89999999999999------9999960388888669899999999999980
Q gi|254781144|r 14 REKDIMMVSHLLAL------QKEILATFGLNNPFVSTTHLYNGIARLAEAV 58 (76)
Q Consensus 14 ~~qk~~~L~~i~~~------Q~q~lq~~G~~nplV~~~n~yntl~~~~e~a 58 (76)
-.+|.+.|..+++- -+++........|=+++.-+|+||..+.+..
T Consensus 16 T~~R~~il~~l~~~~~~~~sa~~i~~~l~~~~~~is~~TVYR~L~~l~~~g 66 (85)
T 2w57_A 16 TLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (85)
T ss_dssp CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 989999999998289999999999999986088857899999999999678
No 4
>>3lm7_A Putative 4-hydroxy-2-oxoglutarate aldolase / 2- dehydro-3-deoxyphosphogluconate aldolase...; structural genomics, PSI-2; 1.90A {Yersinia enterocolitica} (A:)
Probab=27.85 E-value=37 Score=16.60 Aligned_cols=19 Identities=26% Similarity=0.756 Sum_probs=14.5
Q ss_pred CEEEEEECCCCCHHHHHHH
Q ss_conf 3088981147998999999
Q gi|254781144|r 2 DAKVNIGLGSGNREKDIMM 20 (76)
Q Consensus 2 Dv~V~VGLG~G~~~qk~~~ 20 (76)
|-.|+||||.|+..|--+.
T Consensus 65 ~~avSVGLGaGDp~Q~~~V 83 (249)
T 3lm7_A 65 DNALSVGLGAGDPRQSVXV 83 (249)
T ss_dssp TTCEEEECSTTCGGGHHHH
T ss_pred CCCEEEECCCCCHHHHHHH
T ss_conf 7864774388997999999
No 5
>>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* (A:1-88)
Probab=25.72 E-value=58 Score=15.49 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 899999999999999-----999960388888669899999999999980
Q gi|254781144|r 14 REKDIMMVSHLLALQ-----KEILATFGLNNPFVSTTHLYNGIARLAEAV 58 (76)
Q Consensus 14 ~~qk~~~L~~i~~~Q-----~q~lq~~G~~nplV~~~n~yntl~~~~e~a 58 (76)
-.+|.+.|..+.+.. +++.....-..|-+++.-+|++|..+.+..
T Consensus 21 T~~R~~il~~l~~~~~~~s~~ei~~~l~~~~~~is~aTVYR~L~~l~~~g 70 (88)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (88)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999828999999999998751053323178999999998876
No 6
>>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} (A:1-46)
Probab=25.00 E-value=27 Score=17.34 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=18.0
Q ss_pred HHHHHHHHCCC--CCHHHHHCCCCH
Q ss_conf 99999998089--887885069885
Q gi|254781144|r 50 GIARLAEAVGV--QNVNEYFNNPDS 72 (76)
Q Consensus 50 tl~~~~e~aG~--k~~~~ff~dP~~ 72 (76)
|++++.+.+|+ -.++++|++|..
T Consensus 4 ti~dIA~~agvS~~TVSr~ln~~~~ 28 (46)
T 2hsg_A 4 TIYDVAREASVSMATVSRVVNGNPN 28 (46)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTTCTT
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 8999999989699999999789599
No 7
>>2asr_A Aspartate receptor; chemotaxis; 2.30A {Escherichia coli} (A:)
Probab=24.89 E-value=60 Score=15.40 Aligned_cols=31 Identities=19% Similarity=0.453 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHCCCCHH
Q ss_conf 9899999999999980898878850698854
Q gi|254781144|r 43 STTHLYNGIARLAEAVGVQNVNEYFNNPDSE 73 (76)
Q Consensus 43 ~~~n~yntl~~~~e~aG~k~~~~ff~dP~~~ 73 (76)
+-+.|++.|.++++..-=.|.+.||.-|.+.
T Consensus 89 ~y~~~~~~L~~l~~aL~~~d~~~f~~~~~q~ 119 (142)
T 2asr_A 89 KYKNYYTALTELIDYLDYGNTGAYFAQPTQG 119 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHCCHHH
T ss_conf 9999999999999998779999998477399
No 8
>>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} (A:1-60)
Probab=23.80 E-value=29 Score=17.18 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=15.4
Q ss_pred HHHHHHHHHCCC--CCHHHHHCCCC
Q ss_conf 999999998089--88788506988
Q gi|254781144|r 49 NGIARLAEAVGV--QNVNEYFNNPD 71 (76)
Q Consensus 49 ntl~~~~e~aG~--k~~~~ff~dP~ 71 (76)
-|++++.+.+|+ ..++++|++|.
T Consensus 10 ~tl~diA~~aGvS~sTVSr~ln~~~ 34 (60)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYNRPE 34 (60)
T ss_dssp THHHHHHHHHTSCHHHHHHHHHCGG
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 6299999998849999999858989
No 9
>>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli} (A:47-107)
Probab=22.65 E-value=45 Score=16.12 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.4
Q ss_pred HHHHHHHHCCCCCHHHHH
Q ss_conf 999999980898878850
Q gi|254781144|r 50 GIARLAEAVGVQNVNEYF 67 (76)
Q Consensus 50 tl~~~~e~aG~k~~~~ff 67 (76)
+++++++..||.|++.|-
T Consensus 25 ~i~~ia~~~Gf~~~s~f~ 42 (61)
T 2k9s_A 25 PIATVGRNVGFDDQLYFS 42 (61)
T ss_dssp CHHHHHHHTTCCCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHH
T ss_conf 199999996899899999
No 10
>>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii} (A:128-268)
Probab=21.13 E-value=54 Score=15.66 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=17.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 308898114799899999999999
Q gi|254781144|r 2 DAKVNIGLGSGNREKDIMMVSHLL 25 (76)
Q Consensus 2 Dv~V~VGLG~G~~~qk~~~L~~i~ 25 (76)
+|.++||+|.|..-+....+--.+
T Consensus 82 ~v~lkvGIG~g~ta~~A~~~At~a 105 (141)
T 2qv6_A 82 KIELKAGIGIGRTAEDASNLADIG 105 (141)
T ss_dssp CCCEEEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 933898654588879999999989
No 11
>>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor} (A:17-85)
Probab=20.58 E-value=74 Score=14.90 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHH----HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 9999999999999----9999960388888669899999999999980
Q gi|254781144|r 15 EKDIMMVSHLLAL----QKEILATFGLNNPFVSTTHLYNGIARLAEAV 58 (76)
Q Consensus 15 ~qk~~~L~~i~~~----Q~q~lq~~G~~nplV~~~n~yntl~~~~e~a 58 (76)
.+|.+.|.-+.+. -+++.+.+-...|=+++.-+|++|..+.+..
T Consensus 3 ~qR~~Il~~l~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~~~G 50 (69)
T 3eyy_A 3 PQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELG 50 (69)
T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 999999999972799899999999997588865488999999999749
Done!