Query gi|254781144|ref|YP_003065557.1| hypothetical protein CLIBASIA_05240 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 76 No_of_seqs 101 out of 111 Neff 5.1 Searched_HMMs 23785 Date Wed Jun 1 01:38:14 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781144.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2asr_A Aspartate receptor; che 62.2 4.8 0.0002 20.7 2.9 30 45-74 91-120 (142) 2 1vls_A TAR, aspartate receptor 50.7 7.4 0.00031 19.6 2.3 29 45-73 94-122 (146) 3 3m6y_A 4-hydroxy-2-oxoglutarat 35.7 8.3 0.00035 19.3 0.6 18 2-19 87-104 (275) 4 3m0z_A Putative aldolase; MCSG 35.3 19 0.00078 17.4 2.4 24 2-26 65-88 (249) 5 1mzb_A Ferric uptake regulatio 31.9 26 0.0011 16.5 2.7 45 14-58 17-67 (136) 6 2w57_A Ferric uptake regulatio 30.6 28 0.0012 16.4 2.6 45 14-58 16-66 (150) 7 2lig_A Aspartate receptor; che 23.9 38 0.0016 15.7 2.3 30 44-73 103-132 (164) 8 2fe3_A Peroxide operon regulat 21.6 49 0.0021 15.0 3.2 45 14-58 21-70 (145) 9 3mx6_A Methionine aminopeptida 18.2 59 0.0025 14.6 8.1 56 2-61 109-164 (262) 10 3eyy_A Putative iron uptake re 16.9 63 0.0026 14.4 5.7 46 14-59 18-67 (145) No 1 >2asr_A Aspartate receptor; chemotaxis; 2.30A {Escherichia coli} SCOP: a.24.2.1 Probab=62.19 E-value=4.8 Score=20.66 Aligned_cols=30 Identities=20% Similarity=0.476 Sum_probs=27.1 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHCCCCHHH Q ss_conf 999999999999808988788506988543 Q gi|254781144|r 45 THLYNGIARLAEAVGVQNVNEYFNNPDSEQ 74 (76) Q Consensus 45 ~n~yntl~~~~e~aG~k~~~~ff~dP~~~q 74 (76) +.||++|++++....-++.+.||.-|.+.- T Consensus 91 ~~y~~aL~el~~~L~~~~~~~f~~qptQ~~ 120 (142) T 2asr_A 91 KNYYTALTELIDYLDYGNTGAYFAQPTQGM 120 (142) T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHSCHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHCCCHHH T ss_conf 999999999999987799899973870999 No 2 >1vls_A TAR, aspartate receptor; chemotaxis, bacterial chemotaxis receptor, unbound; 1.85A {Salmonella typhimurium} SCOP: a.24.2.1 PDB: 1vlt_A 1was_A 1wat_A 1jmw_A Probab=50.74 E-value=7.4 Score=19.60 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=26.3 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHCCCCHH Q ss_conf 99999999999980898878850698854 Q gi|254781144|r 45 THLYNGIARLAEAVGVQNVNEYFNNPDSE 73 (76) Q Consensus 45 ~n~yntl~~~~e~aG~k~~~~ff~dP~~~ 73 (76) +.||++|++++....=++.+.||.-|.+. T Consensus 94 ~~~~~aL~el~~~L~~~~i~~f~~qPtQ~ 122 (146) T 1vls_A 94 QRYQAALAELIQFLDNGNMDAYFAQPTQG 122 (146) T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHSCHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHCCHHH T ss_conf 99999999999998879989997187599 No 3 >3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A Probab=35.71 E-value=8.3 Score=19.32 Aligned_cols=18 Identities=39% Similarity=0.780 Sum_probs=13.6 Q ss_pred CEEEEEECCCCCHHHHHH Q ss_conf 308898114799899999 Q gi|254781144|r 2 DAKVNIGLGSGNREKDIM 19 (76) Q Consensus 2 Dv~V~VGLG~G~~~qk~~ 19 (76) |-.|+||||.|+..|--+ T Consensus 87 ~~avSVGLGaGDp~Q~~~ 104 (275) T 3m6y_A 87 DDAVSIGLGAGDNRQAAV 104 (275) T ss_dssp TTCEEEECCTTCGGGHHH T ss_pred CCCEEEECCCCCHHHHHH T ss_conf 786488528999799999 No 4 >3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A Probab=35.25 E-value=19 Score=17.38 Aligned_cols=24 Identities=33% Similarity=0.675 Sum_probs=16.1 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHH Q ss_conf 3088981147998999999999999 Q gi|254781144|r 2 DAKVNIGLGSGNREKDIMMVSHLLA 26 (76) Q Consensus 2 Dv~V~VGLG~G~~~qk~~~L~~i~~ 26 (76) |-.|+||||.|+..|- .+...|+. T Consensus 65 ~~avSVGLGaGDp~Q~-~~Va~Ia~ 88 (249) T 3m0z_A 65 DNALSVGLGAGDPNQS-AMVSEISR 88 (249) T ss_dssp TTCEEEECSSSCGGGH-HHHHHHHH T ss_pred CCCEEEECCCCCHHHH-HHHHHHHH T ss_conf 7864785388997999-99999998 No 5 >1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42 Probab=31.89 E-value=26 Score=16.54 Aligned_cols=45 Identities=9% Similarity=0.121 Sum_probs=30.5 Q ss_pred HHHHHHHHHHHHHHH------HHHHHCCCCCCCCCCHHHHHHHHHHHHHHC Q ss_conf 899999999999999------999960388888669899999999999980 Q gi|254781144|r 14 REKDIMMVSHLLALQ------KEILATFGLNNPFVSTTHLYNGIARLAEAV 58 (76) Q Consensus 14 ~~qk~~~L~~i~~~Q------~q~lq~~G~~nplV~~~n~yntl~~~~e~a 58 (76) -.+|.+.|..+.+.+ ++++...-..+|=+++.-+|++|..++|.. T Consensus 17 T~qR~~Il~~L~~~~~~h~sa~eI~~~l~~~~~~i~~~TVYR~L~~L~e~g 67 (136) T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136) T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC T ss_conf 989999999998589999999999999997688988899999999999689 No 6 >2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, DNA-binding; 2.60A {Vibrio cholerae} Probab=30.57 E-value=28 Score=16.40 Aligned_cols=45 Identities=9% Similarity=0.091 Sum_probs=30.5 Q ss_pred HHHHHHHHHHHHHHH------HHHHHCCCCCCCCCCHHHHHHHHHHHHHHC Q ss_conf 899999999999999------999960388888669899999999999980 Q gi|254781144|r 14 REKDIMMVSHLLALQ------KEILATFGLNNPFVSTTHLYNGIARLAEAV 58 (76) Q Consensus 14 ~~qk~~~L~~i~~~Q------~q~lq~~G~~nplV~~~n~yntl~~~~e~a 58 (76) -.+|.+.|.-+.... ++++...-..+|=+++.-+|+||..+.+.. T Consensus 16 T~qR~~Il~~l~~~~~~h~sa~el~~~l~~~~~~i~~aTVYR~L~~l~~~g 66 (150) T 2w57_A 16 TLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150) T ss_dssp CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT T ss_pred CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH T ss_conf 999999999998389999999999999986188867799999999998754 No 7 >2lig_A Aspartate receptor; chemotaxis; HET: PHN; 2.00A {Salmonella typhimurium} SCOP: a.24.2.1 PDB: 1lih_A* Probab=23.85 E-value=38 Score=15.67 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=25.8 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHCCCCHH Q ss_conf 899999999999980898878850698854 Q gi|254781144|r 44 TTHLYNGIARLAEAVGVQNVNEYFNNPDSE 73 (76) Q Consensus 44 ~~n~yntl~~~~e~aG~k~~~~ff~dP~~~ 73 (76) -+.|++.|.++++...=.|.+.||.-|.+. T Consensus 103 y~~~~~aL~~l~~~L~~~d~~~f~~~ptq~ 132 (164) T 2lig_A 103 YQRYQAALAELIQFLDNGNMDAYFAQPTQG 132 (164) T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHSCHHH T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHCCCHH T ss_conf 999999999999998879999997374147 No 8 >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* Probab=21.59 E-value=49 Score=15.03 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=29.3 Q ss_pred HHHHHHHHHHHHHH-----HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC Q ss_conf 89999999999999-----9999960388888669899999999999980 Q gi|254781144|r 14 REKDIMMVSHLLAL-----QKEILATFGLNNPFVSTTHLYNGIARLAEAV 58 (76) Q Consensus 14 ~~qk~~~L~~i~~~-----Q~q~lq~~G~~nplV~~~n~yntl~~~~e~a 58 (76) -.+|.+.|.-+... -++++......+|-|++..+|++|..+.+.. T Consensus 21 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~~~g 70 (145) T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145) T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT T ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH T ss_conf 99999999999858999999999999985078988889999999998552 No 9 >3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A Probab=18.21 E-value=59 Score=14.60 Aligned_cols=56 Identities=9% Similarity=-0.014 Sum_probs=45.2 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC Q ss_conf 308898114799899999999999999999960388888669899999999999980898 Q gi|254781144|r 2 DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61 (76) Q Consensus 2 Dv~V~VGLG~G~~~qk~~~L~~i~~~Q~q~lq~~G~~nplV~~~n~yntl~~~~e~aG~k 61 (76) |++-.+-+|.-+++++ .....+...|+.++....|. ++...++....+.++..||. T Consensus 109 D~tRT~~vg~~~~~~~-~~~~~~~~a~~~~i~~~rpG---~~~~dv~~a~~~~~~~~g~~ 164 (262) T 3mx6_A 109 DTSRMYYVGDVAIKPK-RLIQVTYDAMMKGIEVVRPG---AKLGDIGYAIQSYAEKHNYS 164 (262) T ss_dssp EEEEEEECSSCCHHHH-HHHHHHHHHHHHHHHTCSTT---CBHHHHHHHHHHHHHHTTCE T ss_pred ECCCEEEECCCCHHHH-HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCCC T ss_conf 2121366479998999-99999999999999971398---99999999999999986894 No 10 >3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor} Probab=16.95 E-value=63 Score=14.43 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=30.3 Q ss_pred HHHHHHHHHHHHHH----HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC Q ss_conf 89999999999999----99999603888886698999999999999808 Q gi|254781144|r 14 REKDIMMVSHLLAL----QKEILATFGLNNPFVSTTHLYNGIARLAEAVG 59 (76) Q Consensus 14 ~~qk~~~L~~i~~~----Q~q~lq~~G~~nplV~~~n~yntl~~~~e~aG 59 (76) -.+|.+.|.-+... -++++...-...|=+++..+|++|..+.+..= T Consensus 18 T~~R~~Il~~L~~~~~~ta~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 67 (145) T 3eyy_A 18 TPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145) T ss_dssp CHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHE T ss_conf 99999999999737998999999999975888765899999999998650 Done!