BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781144|ref|YP_003065557.1| hypothetical protein CLIBASIA_05240 [Candidatus Liberibacter asiaticus str. psy62] (76 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781144|ref|YP_003065557.1| hypothetical protein CLIBASIA_05240 [Candidatus Liberibacter asiaticus str. psy62] gi|254040821|gb|ACT57617.1| hypothetical protein CLIBASIA_05240 [Candidatus Liberibacter asiaticus str. psy62] Length = 76 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 76/76 (100%), Positives = 76/76 (100%) Query: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV Sbjct: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60 Query: 61 QNVNEYFNNPDSEQWN 76 QNVNEYFNNPDSEQWN Sbjct: 61 QNVNEYFNNPDSEQWN 76 >gi|315122535|ref|YP_004063024.1| hypothetical protein CKC_03935 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495937|gb|ADR52536.1| hypothetical protein CKC_03935 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 637 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 60/71 (84%), Positives = 67/71 (94%) Query: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60 MDAKVNIGLGSG+REKD MM+SHLL LQKEILATFG+NNPFVS+T+LYNGIARLAE++GV Sbjct: 503 MDAKVNIGLGSGSREKDTMMISHLLGLQKEILATFGINNPFVSSTNLYNGIARLAESIGV 562 Query: 61 QNVNEYFNNPD 71 QNVNEYF PD Sbjct: 563 QNVNEYFTRPD 573 >gi|227822445|ref|YP_002826417.1| hypothetical protein NGR_c19000 [Sinorhizobium fredii NGR234] gi|227341446|gb|ACP25664.1| hypothetical protein NGR_c19000 [Sinorhizobium fredii NGR234] Length = 361 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 36/74 (48%), Positives = 53/74 (71%) Query: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60 MDA VN GLG+G RE+D+MM+ + LQ+++L T G +NP+VS +LYNGIA+ EA G+ Sbjct: 194 MDATVNTGLGAGTRERDMMMIQMIQQLQEKLLMTLGPDNPYVSPDNLYNGIAKSVEAAGL 253 Query: 61 QNVNEYFNNPDSEQ 74 ++ + YF P E+ Sbjct: 254 KSPDLYFTKPTPEE 267 >gi|227822448|ref|YP_002826420.1| hypothetical protein NGR_c19030 [Sinorhizobium fredii NGR234] gi|227341449|gb|ACP25667.1| hypothetical protein NGR_c19030 [Sinorhizobium fredii NGR234] Length = 684 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 36/74 (48%), Positives = 53/74 (71%) Query: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60 MDA VN GLG+G RE+D+MM+ + LQ+++L T G +NP+VS +LYNGIA+ EA G+ Sbjct: 517 MDATVNTGLGAGTRERDMMMIQMIQQLQEKLLMTLGPDNPYVSPDNLYNGIAKSVEAAGL 576 Query: 61 QNVNEYFNNPDSEQ 74 ++ + YF P E+ Sbjct: 577 KSPDLYFTKPTPEE 590 >gi|150397041|ref|YP_001327508.1| hypothetical protein Smed_1838 [Sinorhizobium medicae WSM419] gi|150028556|gb|ABR60673.1| hypothetical protein Smed_1838 [Sinorhizobium medicae WSM419] Length = 683 Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 35/74 (47%), Positives = 53/74 (71%) Query: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60 MDA +N GLG+G RE+D+MM+ +L LQ+++L G +NP+VS +LYNGIA+ EA G+ Sbjct: 516 MDATINTGLGAGTRERDMMMIQMILQLQEKLLMALGPDNPYVSPDNLYNGIAKSVEAAGL 575 Query: 61 QNVNEYFNNPDSEQ 74 ++ + YF P E+ Sbjct: 576 KSPDLYFTKPAPEE 589 >gi|291334599|gb|ADD94249.1| hypothetical protein Daci_1943 [uncultured phage MedDCM-OCT-S04-C136] Length = 741 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 7/69 (10%) Query: 7 IGLGSGNREKDIMMVSHLLALQKEILATF----GLNNPFVSTTHLYNGIARLAEAVGVQN 62 +GLG+G++E+ +M++ +L Q L F G P V+ ++YN + ++ E G++N Sbjct: 542 VGLGTGSKEQQTIMLNSILERQ---LQAFQIQGGKEMPMVNLKNMYNTLTKMVENAGLKN 598 Query: 63 VNEYFNNPD 71 V YF +PD Sbjct: 599 VETYFVDPD 607 >gi|260753098|ref|YP_003225991.1| hypothetical protein Za10_0861 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552461|gb|ACV75407.1| hypothetical protein Za10_0861 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 729 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60 M +V +GLGSG +++ + LL++Q++ LA GL + +YN IA + G+ Sbjct: 517 MRVRVTVGLGSGRKDQRLAYRQQLLSIQQQALAV-GL----TGSKQIYNNIAAMIRDCGL 571 Query: 61 QNVNEYFNNPD 71 N +Y +PD Sbjct: 572 GNPTDYLIDPD 582 >gi|56551276|ref|YP_162115.1| hypothetical protein ZMO0380 [Zymomonas mobilis subsp. mobilis ZM4] gi|56542850|gb|AAV89004.1| hypothetical protein ZMO0380 [Zymomonas mobilis subsp. mobilis ZM4] Length = 729 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60 M +V +GLGSG +++ + LL++Q++ LA GL + +YN IA + G+ Sbjct: 517 MRVRVTVGLGSGRKDQRLAYRQQLLSIQQQALAV-GL----TGSKQIYNNIAAMIRDCGL 571 Query: 61 QNVNEYFNNPD 71 N +Y +PD Sbjct: 572 GNPTDYLIDPD 582 >gi|241760934|ref|ZP_04759023.1| hypothetical protein ZmobDRAFT_0099 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374553|gb|EER64014.1| hypothetical protein ZmobDRAFT_0099 [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 729 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60 M +V +GLGSG +++ + LL++Q++ LA GL + +YN IA + G+ Sbjct: 517 MRVRVTVGLGSGRKDQRLAYRQQLLSIQQQALAV-GL----TGSKQIYNNIAAMIRDCGL 571 Query: 61 QNVNEYFNNPD 71 N +Y +PD Sbjct: 572 GNPTDYLIDPD 582 >gi|148257059|ref|YP_001241644.1| hypothetical protein BBta_5791 [Bradyrhizobium sp. BTAi1] gi|146409232|gb|ABQ37738.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 557 Score = 40.8 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Query: 2 DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61 D + +GLGSG + + + +QKE++ +N V LYN A L +G + Sbjct: 356 DMTIEVGLGSGGKAQQFAQTMAIANVQKELVMAGKVN--LVGDRELYNTAAELTRIMGHK 413 Query: 62 NVNEYFNNP 70 N +FN+P Sbjct: 414 NPGRFFNDP 422 >gi|291334641|gb|ADD94289.1| portal protein [uncultured phage MedDCM-OCT-S04-C64] Length = 755 Score = 37.0 bits (84), Expect = 1.00, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Query: 5 VNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQNVN 64 V +G+GS +RE+ ++ + ++A Q E++A G+ V +Y + +A+ G+Q Sbjct: 520 VQVGVGSVSRERRMVALETIMAKQNELIANGGMGT-LVQPFQVYQTLRDIADGFGLQP-Q 577 Query: 65 EYFNNP 70 YF +P Sbjct: 578 AYFTDP 583 >gi|160897386|ref|YP_001562968.1| hypothetical protein Daci_1943 [Delftia acidovorans SPH-1] gi|160362970|gb|ABX34583.1| conserved hypothetical protein [Delftia acidovorans SPH-1] Length = 763 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 40/65 (61%), Gaps = 5/65 (7%) Query: 3 AKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQN 62 A +N+GLG+G++++ +V L+ + ++ T GL + ++Y A+L +AVG ++ Sbjct: 561 ATINVGLGTGSKDQ---LVQQLMMIGQQ--QTLGLQIGTATPKNVYETQAQLTKAVGFKS 615 Query: 63 VNEYF 67 +++F Sbjct: 616 PDKFF 620 >gi|253567800|ref|ZP_04845211.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251841873|gb|EES69953.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 775 Score = 34.3 bits (77), Expect = 6.6, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 12 GNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYN-GIARLAEAVGVQNVNEYF 67 G+RE+D+ +S+L AL + ATFG+ N + H Y+ GIA + Y Sbjct: 361 GDREQDLSFLSNLTALSSVLPATFGIYNHKKYSPHFYSFGIAPAGSNKSIAQTGRYL 417 >gi|307308935|ref|ZP_07588618.1| hypothetical protein SinmeBDRAFT_4502 [Sinorhizobium meliloti BL225C] gi|306900569|gb|EFN31182.1| hypothetical protein SinmeBDRAFT_4502 [Sinorhizobium meliloti BL225C] Length = 677 Score = 33.9 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 3/66 (4%) Query: 2 DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61 D ++ G +R++ + +++LLA Q + LA GL P V+ +++N +A+L E G + Sbjct: 517 DVTTSVAFGVMSRDQSMASLNNLLAQQYQALAQ-GL--PIVNAQNIFNTVAKLTELSGYK 573 Query: 62 NVNEYF 67 N ++ Sbjct: 574 NTAAHW 579 Searching..................................................done Results from round 2 >gi|315122535|ref|YP_004063024.1| hypothetical protein CKC_03935 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495937|gb|ADR52536.1| hypothetical protein CKC_03935 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 637 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 60/71 (84%), Positives = 67/71 (94%) Query: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60 MDAKVNIGLGSG+REKD MM+SHLL LQKEILATFG+NNPFVS+T+LYNGIARLAE++GV Sbjct: 503 MDAKVNIGLGSGSREKDTMMISHLLGLQKEILATFGINNPFVSSTNLYNGIARLAESIGV 562 Query: 61 QNVNEYFNNPD 71 QNVNEYF PD Sbjct: 563 QNVNEYFTRPD 573 >gi|227822448|ref|YP_002826420.1| hypothetical protein NGR_c19030 [Sinorhizobium fredii NGR234] gi|227341449|gb|ACP25667.1| hypothetical protein NGR_c19030 [Sinorhizobium fredii NGR234] Length = 684 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 36/74 (48%), Positives = 53/74 (71%) Query: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60 MDA VN GLG+G RE+D+MM+ + LQ+++L T G +NP+VS +LYNGIA+ EA G+ Sbjct: 517 MDATVNTGLGAGTRERDMMMIQMIQQLQEKLLMTLGPDNPYVSPDNLYNGIAKSVEAAGL 576 Query: 61 QNVNEYFNNPDSEQ 74 ++ + YF P E+ Sbjct: 577 KSPDLYFTKPTPEE 590 >gi|254781144|ref|YP_003065557.1| hypothetical protein CLIBASIA_05240 [Candidatus Liberibacter asiaticus str. psy62] gi|254040821|gb|ACT57617.1| hypothetical protein CLIBASIA_05240 [Candidatus Liberibacter asiaticus str. psy62] Length = 76 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 76/76 (100%), Positives = 76/76 (100%) Query: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV Sbjct: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60 Query: 61 QNVNEYFNNPDSEQWN 76 QNVNEYFNNPDSEQWN Sbjct: 61 QNVNEYFNNPDSEQWN 76 >gi|150397041|ref|YP_001327508.1| hypothetical protein Smed_1838 [Sinorhizobium medicae WSM419] gi|150028556|gb|ABR60673.1| hypothetical protein Smed_1838 [Sinorhizobium medicae WSM419] Length = 683 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 35/74 (47%), Positives = 53/74 (71%) Query: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60 MDA +N GLG+G RE+D+MM+ +L LQ+++L G +NP+VS +LYNGIA+ EA G+ Sbjct: 516 MDATINTGLGAGTRERDMMMIQMILQLQEKLLMALGPDNPYVSPDNLYNGIAKSVEAAGL 575 Query: 61 QNVNEYFNNPDSEQ 74 ++ + YF P E+ Sbjct: 576 KSPDLYFTKPAPEE 589 >gi|227822445|ref|YP_002826417.1| hypothetical protein NGR_c19000 [Sinorhizobium fredii NGR234] gi|227341446|gb|ACP25664.1| hypothetical protein NGR_c19000 [Sinorhizobium fredii NGR234] Length = 361 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 36/74 (48%), Positives = 53/74 (71%) Query: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60 MDA VN GLG+G RE+D+MM+ + LQ+++L T G +NP+VS +LYNGIA+ EA G+ Sbjct: 194 MDATVNTGLGAGTRERDMMMIQMIQQLQEKLLMTLGPDNPYVSPDNLYNGIAKSVEAAGL 253 Query: 61 QNVNEYFNNPDSEQ 74 ++ + YF P E+ Sbjct: 254 KSPDLYFTKPTPEE 267 >gi|291334599|gb|ADD94249.1| hypothetical protein Daci_1943 [uncultured phage MedDCM-OCT-S04-C136] Length = 741 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Query: 4 KVNIGLGSGNREKDIMMVSHLLALQKEILATFG-LNNPFVSTTHLYNGIARLAEAVGVQN 62 + +GLG+G++E+ +M++ +L Q + G P V+ ++YN + ++ E G++N Sbjct: 539 SIVVGLGTGSKEQQTIMLNSILERQLQAFQIQGGKEMPMVNLKNMYNTLTKMVENAGLKN 598 Query: 63 VNEYFNNPD 71 V YF +PD Sbjct: 599 VETYFVDPD 607 >gi|160897386|ref|YP_001562968.1| hypothetical protein Daci_1943 [Delftia acidovorans SPH-1] gi|160362970|gb|ABX34583.1| conserved hypothetical protein [Delftia acidovorans SPH-1] Length = 763 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 2 DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61 +A +N+GLG+G++++ + + + Q T GL + ++Y A+L +AVG + Sbjct: 560 NATINVGLGTGSKDQLVQQLMMIGQQQ-----TLGLQIGTATPKNVYETQAQLTKAVGFK 614 Query: 62 NVNEYFNN 69 + +++F + Sbjct: 615 SPDKFFVD 622 >gi|148257059|ref|YP_001241644.1| hypothetical protein BBta_5791 [Bradyrhizobium sp. BTAi1] gi|146409232|gb|ABQ37738.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 557 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Query: 2 DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61 D + +GLGSG + + + +QKE++ G N V LYN A L +G + Sbjct: 356 DMTIEVGLGSGGKAQQFAQTMAIANVQKELVMA-GKVN-LVGDRELYNTAAELTRIMGHK 413 Query: 62 NVNEYFNNP 70 N +FN+P Sbjct: 414 NPGRFFNDP 422 >gi|260753098|ref|YP_003225991.1| hypothetical protein Za10_0861 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552461|gb|ACV75407.1| hypothetical protein Za10_0861 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 729 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Query: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60 M +V +GLGSG +++ + LL++Q++ LA + +YN IA + G+ Sbjct: 517 MRVRVTVGLGSGRKDQRLAYRQQLLSIQQQALAV-----GLTGSKQIYNNIAAMIRDCGL 571 Query: 61 QNVNEYFNNPD 71 N +Y +PD Sbjct: 572 GNPTDYLIDPD 582 >gi|241760934|ref|ZP_04759023.1| hypothetical protein ZmobDRAFT_0099 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374553|gb|EER64014.1| hypothetical protein ZmobDRAFT_0099 [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 729 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Query: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60 M +V +GLGSG +++ + LL++Q++ LA + +YN IA + G+ Sbjct: 517 MRVRVTVGLGSGRKDQRLAYRQQLLSIQQQALAV-----GLTGSKQIYNNIAAMIRDCGL 571 Query: 61 QNVNEYFNNPD 71 N +Y +PD Sbjct: 572 GNPTDYLIDPD 582 >gi|56551276|ref|YP_162115.1| hypothetical protein ZMO0380 [Zymomonas mobilis subsp. mobilis ZM4] gi|56542850|gb|AAV89004.1| hypothetical protein ZMO0380 [Zymomonas mobilis subsp. mobilis ZM4] Length = 729 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Query: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60 M +V +GLGSG +++ + LL++Q++ LA + +YN IA + G+ Sbjct: 517 MRVRVTVGLGSGRKDQRLAYRQQLLSIQQQALAV-----GLTGSKQIYNNIAAMIRDCGL 571 Query: 61 QNVNEYFNNPD 71 N +Y +PD Sbjct: 572 GNPTDYLIDPD 582 >gi|167600438|ref|YP_001671938.1| portal protein [Pseudomonas phage LUZ24] gi|161168301|emb|CAP45466.1| portal protein [Pseudomonas phage LUZ24] Length = 706 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 2 DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61 D V +G+G+ N+++ ++ + + + + ++ VS +LYN + + E G + Sbjct: 513 DLTVTVGIGNMNKDQQMLHLMRIWEMAQAVVGGG-GLGVLVSEQNLYNILKEVTENAGYK 571 Query: 62 NVNEYFNNPDSEQ 74 + + ++ NPDS + Sbjct: 572 DPDHFWTNPDSPE 584 >gi|291334641|gb|ADD94289.1| portal protein [uncultured phage MedDCM-OCT-S04-C64] Length = 755 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 2 DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61 + V +G+GS +RE+ ++ + ++A Q E++A G+ V +Y + +A+ G+Q Sbjct: 517 NTSVQVGVGSVSRERRMVALETIMAKQNELIANGGMGT-LVQPFQVYQTLRDIADGFGLQ 575 Query: 62 NVNEYFNNP 70 YF +P Sbjct: 576 -PQAYFTDP 583 >gi|27476052|ref|NP_775254.1| putative portal protein [Pseudomonas phage PaP3] gi|27414482|gb|AAL85568.1| ORF.04 [Pseudomonas phage PaP3] Length = 705 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 2 DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61 D V +G+G+ N+++ ++ + + + + ++ VS +LYN + + E G + Sbjct: 512 DLTVTVGIGNMNKDQQMLHLMRIWEMAQAVVGGG-GLGVLVSEQNLYNILKEVTENAGYK 570 Query: 62 NVNEYFNNPDSEQ 74 + + ++ NP+S + Sbjct: 571 DPDRFWTNPNSPE 583 >gi|307308935|ref|ZP_07588618.1| hypothetical protein SinmeBDRAFT_4502 [Sinorhizobium meliloti BL225C] gi|306900569|gb|EFN31182.1| hypothetical protein SinmeBDRAFT_4502 [Sinorhizobium meliloti BL225C] Length = 677 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 2 DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61 D ++ G +R++ + +++LLA Q P V+ +++N +A+L E G + Sbjct: 517 DVTTSVAFGVMSRDQSMASLNNLLAQQ---YQALAQGLPIVNAQNIFNTVAKLTELSGYK 573 Query: 62 N 62 N Sbjct: 574 N 574 >gi|288817860|ref|YP_003432207.1| putative portal protein [Hydrogenobacter thermophilus TK-6] gi|288787259|dbj|BAI69006.1| putative portal protein [Hydrogenobacter thermophilus TK-6] Length = 618 Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 5/73 (6%) Query: 2 DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61 D ++ G+G G ++ + L L + ++YN + +L E +G + Sbjct: 514 DVVISAGIGVGTKQ-----TNMANLQLLLQLYPKLLQLGIATPKNVYNLVKKLIEEMGYK 568 Query: 62 NVNEYFNNPDSEQ 74 NV+++ +P+ Q Sbjct: 569 NVDDFLQDPEQAQ 581 >gi|308751459|gb|ADO44942.1| hypothetical protein Hydth_0542 [Hydrogenobacter thermophilus TK-6] Length = 618 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Query: 2 DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61 D ++ G+G G ++ + L L + ++YN + L E +G + Sbjct: 514 DVVISAGIGVGTKQ-----TNMANLQLLLQLYPKLLQLGIATPKNVYNLVKNLIEEMGYK 568 Query: 62 NVNEYFNNPDSEQ 74 NV+++ +P+ Q Sbjct: 569 NVDDFLQDPEQAQ 581 >gi|326433889|gb|EGD79459.1| hypothetical protein PTSG_10025 [Salpingoeca sp. ATCC 50818] Length = 6681 Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 5/59 (8%) Query: 9 LGSGNREKDIMMVSHLLALQKEILATFG-----LNNPFVSTTHLYNGIARLAEAVGVQN 62 LGS ++E D+++++ +L Q+ +L T + L RLAE +G+ + Sbjct: 5415 LGSSSQEPDLVILAAMLKRQERVLQTLAHTKTRPEVGRLMLEQLQQTAQRLAECLGLHD 5473 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.310 0.132 0.357 Lambda K H 0.267 0.0390 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,271,932,601 Number of Sequences: 14124377 Number of extensions: 36168046 Number of successful extensions: 79183 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 21 Number of HSP's that attempted gapping in prelim test: 79153 Number of HSP's gapped (non-prelim): 37 length of query: 76 length of database: 4,842,793,630 effective HSP length: 47 effective length of query: 29 effective length of database: 4,178,947,911 effective search space: 121189489419 effective search space used: 121189489419 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 75 (33.6 bits)