BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781144|ref|YP_003065557.1| hypothetical protein
CLIBASIA_05240 [Candidatus Liberibacter asiaticus str. psy62]
         (76 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781144|ref|YP_003065557.1| hypothetical protein CLIBASIA_05240 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040821|gb|ACT57617.1| hypothetical protein CLIBASIA_05240 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 76

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
          MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV
Sbjct: 1  MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60

Query: 61 QNVNEYFNNPDSEQWN 76
          QNVNEYFNNPDSEQWN
Sbjct: 61 QNVNEYFNNPDSEQWN 76


>gi|315122535|ref|YP_004063024.1| hypothetical protein CKC_03935 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495937|gb|ADR52536.1| hypothetical protein CKC_03935 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 637

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/71 (84%), Positives = 67/71 (94%)

Query: 1   MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
           MDAKVNIGLGSG+REKD MM+SHLL LQKEILATFG+NNPFVS+T+LYNGIARLAE++GV
Sbjct: 503 MDAKVNIGLGSGSREKDTMMISHLLGLQKEILATFGINNPFVSSTNLYNGIARLAESIGV 562

Query: 61  QNVNEYFNNPD 71
           QNVNEYF  PD
Sbjct: 563 QNVNEYFTRPD 573


>gi|227822445|ref|YP_002826417.1| hypothetical protein NGR_c19000 [Sinorhizobium fredii NGR234]
 gi|227341446|gb|ACP25664.1| hypothetical protein NGR_c19000 [Sinorhizobium fredii NGR234]
          Length = 361

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 53/74 (71%)

Query: 1   MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
           MDA VN GLG+G RE+D+MM+  +  LQ+++L T G +NP+VS  +LYNGIA+  EA G+
Sbjct: 194 MDATVNTGLGAGTRERDMMMIQMIQQLQEKLLMTLGPDNPYVSPDNLYNGIAKSVEAAGL 253

Query: 61  QNVNEYFNNPDSEQ 74
           ++ + YF  P  E+
Sbjct: 254 KSPDLYFTKPTPEE 267


>gi|227822448|ref|YP_002826420.1| hypothetical protein NGR_c19030 [Sinorhizobium fredii NGR234]
 gi|227341449|gb|ACP25667.1| hypothetical protein NGR_c19030 [Sinorhizobium fredii NGR234]
          Length = 684

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 53/74 (71%)

Query: 1   MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
           MDA VN GLG+G RE+D+MM+  +  LQ+++L T G +NP+VS  +LYNGIA+  EA G+
Sbjct: 517 MDATVNTGLGAGTRERDMMMIQMIQQLQEKLLMTLGPDNPYVSPDNLYNGIAKSVEAAGL 576

Query: 61  QNVNEYFNNPDSEQ 74
           ++ + YF  P  E+
Sbjct: 577 KSPDLYFTKPTPEE 590


>gi|150397041|ref|YP_001327508.1| hypothetical protein Smed_1838 [Sinorhizobium medicae WSM419]
 gi|150028556|gb|ABR60673.1| hypothetical protein Smed_1838 [Sinorhizobium medicae WSM419]
          Length = 683

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/74 (47%), Positives = 53/74 (71%)

Query: 1   MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
           MDA +N GLG+G RE+D+MM+  +L LQ+++L   G +NP+VS  +LYNGIA+  EA G+
Sbjct: 516 MDATINTGLGAGTRERDMMMIQMILQLQEKLLMALGPDNPYVSPDNLYNGIAKSVEAAGL 575

Query: 61  QNVNEYFNNPDSEQ 74
           ++ + YF  P  E+
Sbjct: 576 KSPDLYFTKPAPEE 589


>gi|291334599|gb|ADD94249.1| hypothetical protein Daci_1943 [uncultured phage
           MedDCM-OCT-S04-C136]
          Length = 741

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 7/69 (10%)

Query: 7   IGLGSGNREKDIMMVSHLLALQKEILATF----GLNNPFVSTTHLYNGIARLAEAVGVQN 62
           +GLG+G++E+  +M++ +L  Q   L  F    G   P V+  ++YN + ++ E  G++N
Sbjct: 542 VGLGTGSKEQQTIMLNSILERQ---LQAFQIQGGKEMPMVNLKNMYNTLTKMVENAGLKN 598

Query: 63  VNEYFNNPD 71
           V  YF +PD
Sbjct: 599 VETYFVDPD 607


>gi|260753098|ref|YP_003225991.1| hypothetical protein Za10_0861 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552461|gb|ACV75407.1| hypothetical protein Za10_0861 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 729

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 1   MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
           M  +V +GLGSG +++ +     LL++Q++ LA  GL      +  +YN IA +    G+
Sbjct: 517 MRVRVTVGLGSGRKDQRLAYRQQLLSIQQQALAV-GL----TGSKQIYNNIAAMIRDCGL 571

Query: 61  QNVNEYFNNPD 71
            N  +Y  +PD
Sbjct: 572 GNPTDYLIDPD 582


>gi|56551276|ref|YP_162115.1| hypothetical protein ZMO0380 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542850|gb|AAV89004.1| hypothetical protein ZMO0380 [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 729

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 1   MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
           M  +V +GLGSG +++ +     LL++Q++ LA  GL      +  +YN IA +    G+
Sbjct: 517 MRVRVTVGLGSGRKDQRLAYRQQLLSIQQQALAV-GL----TGSKQIYNNIAAMIRDCGL 571

Query: 61  QNVNEYFNNPD 71
            N  +Y  +PD
Sbjct: 572 GNPTDYLIDPD 582


>gi|241760934|ref|ZP_04759023.1| hypothetical protein ZmobDRAFT_0099 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374553|gb|EER64014.1| hypothetical protein ZmobDRAFT_0099 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 729

 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 1   MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
           M  +V +GLGSG +++ +     LL++Q++ LA  GL      +  +YN IA +    G+
Sbjct: 517 MRVRVTVGLGSGRKDQRLAYRQQLLSIQQQALAV-GL----TGSKQIYNNIAAMIRDCGL 571

Query: 61  QNVNEYFNNPD 71
            N  +Y  +PD
Sbjct: 572 GNPTDYLIDPD 582


>gi|148257059|ref|YP_001241644.1| hypothetical protein BBta_5791 [Bradyrhizobium sp. BTAi1]
 gi|146409232|gb|ABQ37738.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 557

 Score = 40.8 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 2   DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61
           D  + +GLGSG + +       +  +QKE++    +N   V    LYN  A L   +G +
Sbjct: 356 DMTIEVGLGSGGKAQQFAQTMAIANVQKELVMAGKVN--LVGDRELYNTAAELTRIMGHK 413

Query: 62  NVNEYFNNP 70
           N   +FN+P
Sbjct: 414 NPGRFFNDP 422


>gi|291334641|gb|ADD94289.1| portal protein [uncultured phage MedDCM-OCT-S04-C64]
          Length = 755

 Score = 37.0 bits (84), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 5   VNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQNVN 64
           V +G+GS +RE+ ++ +  ++A Q E++A  G+    V    +Y  +  +A+  G+Q   
Sbjct: 520 VQVGVGSVSRERRMVALETIMAKQNELIANGGMGT-LVQPFQVYQTLRDIADGFGLQP-Q 577

Query: 65  EYFNNP 70
            YF +P
Sbjct: 578 AYFTDP 583


>gi|160897386|ref|YP_001562968.1| hypothetical protein Daci_1943 [Delftia acidovorans SPH-1]
 gi|160362970|gb|ABX34583.1| conserved hypothetical protein [Delftia acidovorans SPH-1]
          Length = 763

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 40/65 (61%), Gaps = 5/65 (7%)

Query: 3   AKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQN 62
           A +N+GLG+G++++   +V  L+ + ++   T GL     +  ++Y   A+L +AVG ++
Sbjct: 561 ATINVGLGTGSKDQ---LVQQLMMIGQQ--QTLGLQIGTATPKNVYETQAQLTKAVGFKS 615

Query: 63  VNEYF 67
            +++F
Sbjct: 616 PDKFF 620


>gi|253567800|ref|ZP_04845211.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251841873|gb|EES69953.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 775

 Score = 34.3 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 12  GNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYN-GIARLAEAVGVQNVNEYF 67
           G+RE+D+  +S+L AL   + ATFG+ N    + H Y+ GIA       +     Y 
Sbjct: 361 GDREQDLSFLSNLTALSSVLPATFGIYNHKKYSPHFYSFGIAPAGSNKSIAQTGRYL 417


>gi|307308935|ref|ZP_07588618.1| hypothetical protein SinmeBDRAFT_4502 [Sinorhizobium meliloti
           BL225C]
 gi|306900569|gb|EFN31182.1| hypothetical protein SinmeBDRAFT_4502 [Sinorhizobium meliloti
           BL225C]
          Length = 677

 Score = 33.9 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 2   DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61
           D   ++  G  +R++ +  +++LLA Q + LA  GL  P V+  +++N +A+L E  G +
Sbjct: 517 DVTTSVAFGVMSRDQSMASLNNLLAQQYQALAQ-GL--PIVNAQNIFNTVAKLTELSGYK 573

Query: 62  NVNEYF 67
           N   ++
Sbjct: 574 NTAAHW 579


Searching..................................................done


Results from round 2




>gi|315122535|ref|YP_004063024.1| hypothetical protein CKC_03935 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495937|gb|ADR52536.1| hypothetical protein CKC_03935 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 637

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/71 (84%), Positives = 67/71 (94%)

Query: 1   MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
           MDAKVNIGLGSG+REKD MM+SHLL LQKEILATFG+NNPFVS+T+LYNGIARLAE++GV
Sbjct: 503 MDAKVNIGLGSGSREKDTMMISHLLGLQKEILATFGINNPFVSSTNLYNGIARLAESIGV 562

Query: 61  QNVNEYFNNPD 71
           QNVNEYF  PD
Sbjct: 563 QNVNEYFTRPD 573


>gi|227822448|ref|YP_002826420.1| hypothetical protein NGR_c19030 [Sinorhizobium fredii NGR234]
 gi|227341449|gb|ACP25667.1| hypothetical protein NGR_c19030 [Sinorhizobium fredii NGR234]
          Length = 684

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 53/74 (71%)

Query: 1   MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
           MDA VN GLG+G RE+D+MM+  +  LQ+++L T G +NP+VS  +LYNGIA+  EA G+
Sbjct: 517 MDATVNTGLGAGTRERDMMMIQMIQQLQEKLLMTLGPDNPYVSPDNLYNGIAKSVEAAGL 576

Query: 61  QNVNEYFNNPDSEQ 74
           ++ + YF  P  E+
Sbjct: 577 KSPDLYFTKPTPEE 590


>gi|254781144|ref|YP_003065557.1| hypothetical protein CLIBASIA_05240 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040821|gb|ACT57617.1| hypothetical protein CLIBASIA_05240 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 76

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
          MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV
Sbjct: 1  MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60

Query: 61 QNVNEYFNNPDSEQWN 76
          QNVNEYFNNPDSEQWN
Sbjct: 61 QNVNEYFNNPDSEQWN 76


>gi|150397041|ref|YP_001327508.1| hypothetical protein Smed_1838 [Sinorhizobium medicae WSM419]
 gi|150028556|gb|ABR60673.1| hypothetical protein Smed_1838 [Sinorhizobium medicae WSM419]
          Length = 683

 Score =  123 bits (309), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 35/74 (47%), Positives = 53/74 (71%)

Query: 1   MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
           MDA +N GLG+G RE+D+MM+  +L LQ+++L   G +NP+VS  +LYNGIA+  EA G+
Sbjct: 516 MDATINTGLGAGTRERDMMMIQMILQLQEKLLMALGPDNPYVSPDNLYNGIAKSVEAAGL 575

Query: 61  QNVNEYFNNPDSEQ 74
           ++ + YF  P  E+
Sbjct: 576 KSPDLYFTKPAPEE 589


>gi|227822445|ref|YP_002826417.1| hypothetical protein NGR_c19000 [Sinorhizobium fredii NGR234]
 gi|227341446|gb|ACP25664.1| hypothetical protein NGR_c19000 [Sinorhizobium fredii NGR234]
          Length = 361

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 53/74 (71%)

Query: 1   MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
           MDA VN GLG+G RE+D+MM+  +  LQ+++L T G +NP+VS  +LYNGIA+  EA G+
Sbjct: 194 MDATVNTGLGAGTRERDMMMIQMIQQLQEKLLMTLGPDNPYVSPDNLYNGIAKSVEAAGL 253

Query: 61  QNVNEYFNNPDSEQ 74
           ++ + YF  P  E+
Sbjct: 254 KSPDLYFTKPTPEE 267


>gi|291334599|gb|ADD94249.1| hypothetical protein Daci_1943 [uncultured phage
           MedDCM-OCT-S04-C136]
          Length = 741

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 4   KVNIGLGSGNREKDIMMVSHLLALQKEILATFG-LNNPFVSTTHLYNGIARLAEAVGVQN 62
            + +GLG+G++E+  +M++ +L  Q +     G    P V+  ++YN + ++ E  G++N
Sbjct: 539 SIVVGLGTGSKEQQTIMLNSILERQLQAFQIQGGKEMPMVNLKNMYNTLTKMVENAGLKN 598

Query: 63  VNEYFNNPD 71
           V  YF +PD
Sbjct: 599 VETYFVDPD 607


>gi|160897386|ref|YP_001562968.1| hypothetical protein Daci_1943 [Delftia acidovorans SPH-1]
 gi|160362970|gb|ABX34583.1| conserved hypothetical protein [Delftia acidovorans SPH-1]
          Length = 763

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 2   DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61
           +A +N+GLG+G++++ +  +  +   Q     T GL     +  ++Y   A+L +AVG +
Sbjct: 560 NATINVGLGTGSKDQLVQQLMMIGQQQ-----TLGLQIGTATPKNVYETQAQLTKAVGFK 614

Query: 62  NVNEYFNN 69
           + +++F +
Sbjct: 615 SPDKFFVD 622


>gi|148257059|ref|YP_001241644.1| hypothetical protein BBta_5791 [Bradyrhizobium sp. BTAi1]
 gi|146409232|gb|ABQ37738.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 557

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 2   DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61
           D  + +GLGSG + +       +  +QKE++   G  N  V    LYN  A L   +G +
Sbjct: 356 DMTIEVGLGSGGKAQQFAQTMAIANVQKELVMA-GKVN-LVGDRELYNTAAELTRIMGHK 413

Query: 62  NVNEYFNNP 70
           N   +FN+P
Sbjct: 414 NPGRFFNDP 422


>gi|260753098|ref|YP_003225991.1| hypothetical protein Za10_0861 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552461|gb|ACV75407.1| hypothetical protein Za10_0861 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 729

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 1   MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
           M  +V +GLGSG +++ +     LL++Q++ LA          +  +YN IA +    G+
Sbjct: 517 MRVRVTVGLGSGRKDQRLAYRQQLLSIQQQALAV-----GLTGSKQIYNNIAAMIRDCGL 571

Query: 61  QNVNEYFNNPD 71
            N  +Y  +PD
Sbjct: 572 GNPTDYLIDPD 582


>gi|241760934|ref|ZP_04759023.1| hypothetical protein ZmobDRAFT_0099 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374553|gb|EER64014.1| hypothetical protein ZmobDRAFT_0099 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 729

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 1   MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
           M  +V +GLGSG +++ +     LL++Q++ LA          +  +YN IA +    G+
Sbjct: 517 MRVRVTVGLGSGRKDQRLAYRQQLLSIQQQALAV-----GLTGSKQIYNNIAAMIRDCGL 571

Query: 61  QNVNEYFNNPD 71
            N  +Y  +PD
Sbjct: 572 GNPTDYLIDPD 582


>gi|56551276|ref|YP_162115.1| hypothetical protein ZMO0380 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542850|gb|AAV89004.1| hypothetical protein ZMO0380 [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 729

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 1   MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
           M  +V +GLGSG +++ +     LL++Q++ LA          +  +YN IA +    G+
Sbjct: 517 MRVRVTVGLGSGRKDQRLAYRQQLLSIQQQALAV-----GLTGSKQIYNNIAAMIRDCGL 571

Query: 61  QNVNEYFNNPD 71
            N  +Y  +PD
Sbjct: 572 GNPTDYLIDPD 582


>gi|167600438|ref|YP_001671938.1| portal protein [Pseudomonas phage LUZ24]
 gi|161168301|emb|CAP45466.1| portal protein [Pseudomonas phage LUZ24]
          Length = 706

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 2   DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61
           D  V +G+G+ N+++ ++ +  +  + + ++         VS  +LYN +  + E  G +
Sbjct: 513 DLTVTVGIGNMNKDQQMLHLMRIWEMAQAVVGGG-GLGVLVSEQNLYNILKEVTENAGYK 571

Query: 62  NVNEYFNNPDSEQ 74
           + + ++ NPDS +
Sbjct: 572 DPDHFWTNPDSPE 584


>gi|291334641|gb|ADD94289.1| portal protein [uncultured phage MedDCM-OCT-S04-C64]
          Length = 755

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 2   DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61
           +  V +G+GS +RE+ ++ +  ++A Q E++A  G+    V    +Y  +  +A+  G+Q
Sbjct: 517 NTSVQVGVGSVSRERRMVALETIMAKQNELIANGGMGT-LVQPFQVYQTLRDIADGFGLQ 575

Query: 62  NVNEYFNNP 70
               YF +P
Sbjct: 576 -PQAYFTDP 583


>gi|27476052|ref|NP_775254.1| putative portal protein [Pseudomonas phage PaP3]
 gi|27414482|gb|AAL85568.1| ORF.04 [Pseudomonas phage PaP3]
          Length = 705

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 2   DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61
           D  V +G+G+ N+++ ++ +  +  + + ++         VS  +LYN +  + E  G +
Sbjct: 512 DLTVTVGIGNMNKDQQMLHLMRIWEMAQAVVGGG-GLGVLVSEQNLYNILKEVTENAGYK 570

Query: 62  NVNEYFNNPDSEQ 74
           + + ++ NP+S +
Sbjct: 571 DPDRFWTNPNSPE 583


>gi|307308935|ref|ZP_07588618.1| hypothetical protein SinmeBDRAFT_4502 [Sinorhizobium meliloti
           BL225C]
 gi|306900569|gb|EFN31182.1| hypothetical protein SinmeBDRAFT_4502 [Sinorhizobium meliloti
           BL225C]
          Length = 677

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 2   DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61
           D   ++  G  +R++ +  +++LLA Q           P V+  +++N +A+L E  G +
Sbjct: 517 DVTTSVAFGVMSRDQSMASLNNLLAQQ---YQALAQGLPIVNAQNIFNTVAKLTELSGYK 573

Query: 62  N 62
           N
Sbjct: 574 N 574


>gi|288817860|ref|YP_003432207.1| putative portal protein [Hydrogenobacter thermophilus TK-6]
 gi|288787259|dbj|BAI69006.1| putative portal protein [Hydrogenobacter thermophilus TK-6]
          Length = 618

 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 2   DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61
           D  ++ G+G G ++      +         L    L     +  ++YN + +L E +G +
Sbjct: 514 DVVISAGIGVGTKQ-----TNMANLQLLLQLYPKLLQLGIATPKNVYNLVKKLIEEMGYK 568

Query: 62  NVNEYFNNPDSEQ 74
           NV+++  +P+  Q
Sbjct: 569 NVDDFLQDPEQAQ 581


>gi|308751459|gb|ADO44942.1| hypothetical protein Hydth_0542 [Hydrogenobacter thermophilus TK-6]
          Length = 618

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 2   DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQ 61
           D  ++ G+G G ++      +         L    L     +  ++YN +  L E +G +
Sbjct: 514 DVVISAGIGVGTKQ-----TNMANLQLLLQLYPKLLQLGIATPKNVYNLVKNLIEEMGYK 568

Query: 62  NVNEYFNNPDSEQ 74
           NV+++  +P+  Q
Sbjct: 569 NVDDFLQDPEQAQ 581


>gi|326433889|gb|EGD79459.1| hypothetical protein PTSG_10025 [Salpingoeca sp. ATCC 50818]
          Length = 6681

 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 9    LGSGNREKDIMMVSHLLALQKEILATFG-----LNNPFVSTTHLYNGIARLAEAVGVQN 62
            LGS ++E D+++++ +L  Q+ +L T            +    L     RLAE +G+ +
Sbjct: 5415 LGSSSQEPDLVILAAMLKRQERVLQTLAHTKTRPEVGRLMLEQLQQTAQRLAECLGLHD 5473


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.310    0.132    0.357 

Lambda     K      H
   0.267   0.0390    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,271,932,601
Number of Sequences: 14124377
Number of extensions: 36168046
Number of successful extensions: 79183
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 79153
Number of HSP's gapped (non-prelim): 37
length of query: 76
length of database: 4,842,793,630
effective HSP length: 47
effective length of query: 29
effective length of database: 4,178,947,911
effective search space: 121189489419
effective search space used: 121189489419
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 75 (33.6 bits)