RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781144|ref|YP_003065557.1| hypothetical protein
CLIBASIA_05240 [Candidatus Liberibacter asiaticus str. psy62]
         (76 letters)



>gnl|CDD|115050 pfam06368, Met_asp_mut_E, Methylaspartate mutase E chain (MutE).
           This family consists of several methylaspartate mutase E
           chain proteins (EC:5.4.99.1). Glutamate mutase catalyses
           the first step in the fermentation of glutamate by
           Clostridium tetanomorphum. This is an unusual
           isomerisation in which L-glutamate is converted to
           threo-beta-methyl L-aspartate.
          Length = 441

 Score = 29.4 bits (66), Expect = 0.19
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 22/91 (24%)

Query: 5   VNIGLGS-GNREKDIMMVSHLLALQKEILATFGLNNPFVSTT-HLYNG------------ 50
           + +G G  GN  +DI  +  L  L KE L  +G N+  V+T  H + G            
Sbjct: 207 ITVGYGQVGNLTQDIAALRALRELAKEYLGAYGFNDVDVTTVFHQWMGGFPRDESKAYGL 266

Query: 51  ------IARLAEA--VGVQNVNEYFNNPDSE 73
                 IA L+    V V+  +E    P +E
Sbjct: 267 ISESTTIAALSGTTKVIVKTPHEASGIPTAE 297


>gnl|CDD|130567 TIGR01503, MthylAspMut_E, methylaspartate mutase, E subunit.  This
           model represents the E (epsilon) subunit of
           methylaspartate mutase (glutamate mutase), a
           cobalamin-dependent enzyme that catalyzes the first step
           in a pathway of glutamate fermentation.
          Length = 480

 Score = 27.5 bits (61), Expect = 0.86
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 22/91 (24%)

Query: 5   VNIGLGS-GNREKDIMMVSHLLALQKEILATFGLNNPFVSTT-HLYNG------------ 50
           + +G G  GN  +DI  +  L     E L  +G N+ FV+T  H + G            
Sbjct: 246 ITVGYGQVGNLTQDIAALRALEEQTNEYLKAYGYNDVFVTTVFHQWMGGFPEDESKAFGV 305

Query: 51  ------IARLAEA--VGVQNVNEYFNNPDSE 73
                 IA L+ A  V V++ +E    P +E
Sbjct: 306 ISTATTIAALSGATKVIVKSPHEAIGIPTAE 336


>gnl|CDD|178796 PRK00016, PRK00016, metal-binding heat shock protein; Provisional.
          Length = 159

 Score = 26.8 bits (60), Expect = 1.4
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 5/28 (17%)

Query: 13  NREKDIMMVSHLLALQKEILATFGLNNP 40
           + E + M       L++EILA  GL  P
Sbjct: 132 DEEAEEM-----FGLEEEILAALGLPRP 154


>gnl|CDD|179938 PRK05105, PRK05105, O-succinylbenzoate synthase; Provisional.
          Length = 322

 Score = 26.7 bits (60), Expect = 1.4
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)

Query: 3   AKVNIGLGSGNREKDIMMVSHLLA 26
           AKV +GL    R  D M+V+ LL 
Sbjct: 132 AKVKVGLYEAVR--DGMLVNLLLE 153


>gnl|CDD|182838 PRK10919, PRK10919, ATP-dependent DNA helicase Rep; Provisional.
          Length = 672

 Score = 24.8 bits (54), Expect = 5.8
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 45  THLYNGIARLAEAVGVQNVNEYFNNPDSEQW 75
           TH    I RLAE   V  V +  +  D E W
Sbjct: 457 THWLAEIQRLAEREPVAAVRDLIHGIDYESW 487


>gnl|CDD|165999 PLN02358, PLN02358, glyceraldehyde-3-phosphate dehydrogenase.
          Length = 338

 Score = 23.9 bits (51), Expect = 9.7
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 2  DAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHL 47
          D K+ IG+    R   I  +   + LQ++ +    +N+PF++T ++
Sbjct: 3  DKKIRIGINGFGR---IGRLVARVVLQRDDVELVAVNDPFITTEYM 45


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.315    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,242,561
Number of extensions: 63723
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 10
Length of query: 76
Length of database: 5,994,473
Length adjustment: 46
Effective length of query: 30
Effective length of database: 5,000,505
Effective search space: 150015150
Effective search space used: 150015150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)