RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781144|ref|YP_003065557.1| hypothetical protein
CLIBASIA_05240 [Candidatus Liberibacter asiaticus str. psy62]
         (76 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.8 bits (77), Expect = 0.009
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 22/76 (28%)

Query: 14  REKDI-MMVSHL-------LALQKEILATF-------GLNNPFVSTTHLY----NGIARL 54
              DI  + + L       L   KE++  +              S + L+     G A+L
Sbjct: 97  EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156

Query: 55  AEAV-GVQ-NVNEYFN 68
             A+ G Q N ++YF 
Sbjct: 157 V-AIFGGQGNTDDYFE 171


>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP,
           hydrolase, protein structure initiative, S2F, structure
           2 function project; NMR {Haemophilus influenzae}
          Length = 154

 Score = 24.6 bits (53), Expect = 5.6
 Identities = 6/31 (19%), Positives = 17/31 (54%), Gaps = 5/31 (16%)

Query: 13  NREKDIMMVSHLLALQKEILATFGLNNPFVS 43
           + E + M      +L+ +I+   G ++P+++
Sbjct: 127 DDEAEEM-----ESLETQIMQGLGFDDPYLA 152


>1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics, protein
           structure initiative, nysgxrc target T842, PFAM family
           UPF0054, PSI; 2.70A {Escherichia coli} SCOP: d.92.1.15
          Length = 155

 Score = 24.2 bits (52), Expect = 6.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 26  ALQKEILATFGLNNPFVS 43
           AL+ EI+   G  +P+++
Sbjct: 135 ALETEIMLALGYEDPYIA 152


>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized peroxidase-related
           protein; YP_296737.1, carboxymuconolactone decarboxylase
           family; HET: PGE; 2.15A {Ralstonia eutropha JMP134}
           SCOP: a.152.1.3
          Length = 197

 Score = 24.0 bits (51), Expect = 8.1
 Identities = 6/26 (23%), Positives = 14/26 (53%)

Query: 42  VSTTHLYNGIARLAEAVGVQNVNEYF 67
            + T  +    R+A  +G++  +E+F
Sbjct: 163 AAITAFFGLSNRMANTIGMRPNDEFF 188


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.315    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0482    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 623,835
Number of extensions: 22463
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 4
Length of query: 76
Length of database: 5,693,230
Length adjustment: 45
Effective length of query: 31
Effective length of database: 4,602,250
Effective search space: 142669750
Effective search space used: 142669750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.6 bits)