BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781144|ref|YP_003065557.1| hypothetical protein
CLIBASIA_05240 [Candidatus Liberibacter asiaticus str. psy62]
(76 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781144|ref|YP_003065557.1| hypothetical protein CLIBASIA_05240 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 76
Score = 158 bits (399), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV
Sbjct: 1 MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
Query: 61 QNVNEYFNNPDSEQWN 76
QNVNEYFNNPDSEQWN
Sbjct: 61 QNVNEYFNNPDSEQWN 76
>gi|254780556|ref|YP_003064969.1| hypothetical protein CLIBASIA_02215 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 120
Score = 22.3 bits (46), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 52 ARLAEAVGVQNVNEYFNNPDSE 73
ARL + +G+ ++ YF N DS+
Sbjct: 69 ARLLKGLGMDDLVRYFMNLDSQ 90
>gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 452
Score = 21.9 bits (45), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 39 NPFVSTTHLYNGIARLAEAVGVQNVNEYFNN 69
N F + T L + ++ +A+ +Q VN+ N
Sbjct: 215 NTFNTITDLITSLDKMIKAIDLQKVNQILEN 245
>gi|254780968|ref|YP_003065381.1| hypothetical protein CLIBASIA_04345 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 106
Score = 21.9 bits (45), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 48 YNGIARLAEAVGVQNVNEYFNNPDSEQ 74
Y GI LA+ Q++ EY N P Q
Sbjct: 48 YKGIDVLADDALRQSIKEYSNWPTIPQ 74
>gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 492
Score = 21.2 bits (43), Expect = 3.4, Method: Composition-based stats.
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 55 AEAVGVQNVNEYFNN 69
AE +GV++ +Y+NN
Sbjct: 218 AETIGVEDRVDYYNN 232
>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 416
Score = 20.8 bits (42), Expect = 4.6, Method: Composition-based stats.
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 30 EILATFGLNNPFVSTTHLYNG 50
EI NP + H+YNG
Sbjct: 208 EINKLLEAKNPLNAIVHMYNG 228
>gi|254781054|ref|YP_003065467.1| ribose-5-phosphate isomerase A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 231
Score = 20.8 bits (42), Expect = 4.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 7 IGLGSGNREKDIMMVSHLLALQKEILATFGLN 38
+G G E D V+ L+ KE+ + FGLN
Sbjct: 128 LGRGMLPIEIDQFGVNKTLSALKEVASCFGLN 159
>gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate Dehydrogenase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 333
Score = 20.0 bits (40), Expect = 6.9, Method: Composition-based stats.
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 35 FGLNNPFVSTTHLYNGIARLAEA 57
FG+ +++T H Y G + +A
Sbjct: 167 FGIEKGYMTTVHSYTGDQHVLDA 189
>gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 563
Score = 20.0 bits (40), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 28 QKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
+KE + + +N ++TTH + RL+ AV V
Sbjct: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.315 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,690
Number of Sequences: 1233
Number of extensions: 1572
Number of successful extensions: 11
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 76
length of database: 328,796
effective HSP length: 46
effective length of query: 30
effective length of database: 272,078
effective search space: 8162340
effective search space used: 8162340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 31 (16.5 bits)