Query gi|254781145|ref|YP_003065558.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 350
No_of_seqs 150 out of 629
Neff 8.4
Searched_HMMs 39220
Date Mon May 30 05:26:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781145.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 pfam12236 Head-tail_con Bacter 99.8 9.5E-16 2.4E-20 123.8 25.0 280 41-342 132-412 (480)
2 PHA00670 hypothetical protein 99.6 2.3E-12 6E-17 101.2 25.6 271 43-333 143-420 (540)
3 pfam05133 Phage_prot_Gp6 Phage 98.8 3.2E-06 8.2E-11 60.4 18.1 167 157-329 192-360 (435)
4 pfam07360 consensus 97.8 0.0039 9.9E-08 39.8 16.4 181 159-344 178-371 (412)
5 pfam05126 consensus 97.5 0.0041 1E-07 39.7 12.3 271 30-329 113-397 (473)
6 TIGR01542 A118_put_portal phag 84.3 2.9 7.4E-05 20.7 8.4 288 24-342 109-421 (489)
7 pfam09978 consensus 82.8 3.3 8.5E-05 20.3 7.9 141 175-330 71-228 (270)
8 TIGR01780 SSADH succinic semia 78.4 3.8 9.7E-05 19.9 4.2 15 312-326 277-291 (454)
9 COG3567 Uncharacterized protei 76.6 5.2 0.00013 19.0 6.1 165 165-348 190-373 (452)
10 pfam06381 DUF1073 Protein of u 74.1 6 0.00015 18.6 10.2 143 175-332 164-322 (361)
11 pfam12419 DUF3670 SNF2 Helicas 72.1 2 5E-05 21.8 1.4 17 333-349 96-112 (140)
12 TIGR01538 portal_SPP1 phage po 67.5 8.4 0.00021 17.7 8.8 152 175-333 243-414 (477)
13 TIGR01555 phge_rel_HI1409 phag 45.5 19 0.00049 15.2 4.1 225 117-348 126-379 (426)
14 TIGR01238 D1pyr5carbox3 delta- 39.9 12 0.00032 16.5 0.9 25 31-55 167-191 (525)
15 pfam00862 Sucrose_synth Sucros 38.6 24 0.00062 14.6 5.5 137 160-302 266-427 (550)
16 PRK04366 glycine dehydrogenase 36.0 27 0.00068 14.3 3.6 16 302-317 349-364 (490)
17 TIGR01124 ilvA_2Cterm threonin 35.7 10 0.00026 17.1 -0.0 51 160-210 349-403 (508)
18 TIGR00601 rad23 UV excision re 31.9 19 0.00048 15.3 0.8 22 71-92 189-213 (453)
19 cd05131 RasGAP_IQGAP2 IQGAP2 i 29.8 34 0.00086 13.6 4.3 23 183-205 120-142 (339)
20 TIGR01472 gmd GDP-mannose 4,6- 29.4 27 0.0007 14.2 1.3 10 341-350 312-322 (365)
21 pfam04860 Phage_portal Phage p 28.9 35 0.00089 13.5 17.3 164 165-348 137-314 (348)
22 smart00676 DM10 Domains in hyp 26.4 39 0.00098 13.2 2.9 15 11-25 30-44 (104)
23 PRK07318 dipeptidase PepV; Rev 24.4 42 0.0011 13.0 5.6 68 126-203 69-136 (469)
24 smart00165 UBA Ubiquitin assoc 22.4 28 0.00071 14.2 0.3 23 77-99 4-26 (37)
25 cd00194 UBA Ubiquitin Associat 22.2 28 0.00071 14.2 0.2 25 77-101 4-28 (38)
26 pfam11372 DUF3173 Protein of u 21.9 46 0.0012 12.7 1.3 15 75-89 3-17 (59)
No 1
>pfam12236 Head-tail_con Bacteriophage head to tail connecting protein. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 516 and 555 amino acids in length. The head-tail connector, a dodecamer of gp10, is embedded within a unique five-fold vertex of the head. The connector serves as the site of assembly of the transient DNA packaging motor that translocates the dsDNA genome into a precursor head shell, or prohead.
Probab=99.78 E-value=9.5e-16 Score=123.82 Aligned_cols=280 Identities=13% Similarity=0.101 Sum_probs=196.9
Q ss_pred ECCEEEEEEECHHHEEECCCCCCHHHCCEEEEEEEECHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCE
Q ss_conf 46836898576587434679988646548999999568999872798044302777876410133202456545567514
Q gi|254781145|r 41 SQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALEM 120 (350)
Q Consensus 41 ~~~~v~ie~V~pedf~vdp~A~~l~da~~v~hr~~~t~~eL~~~Gy~~d~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 120 (350)
.++-++..++|.-+++|.+++.. +..+.|.++..+|..++.++.-+ +.+.. .. ...... .....++
T Consensus 132 ~~~~~~f~~~pl~~~~v~~d~~G-~~vd~v~R~~~~t~~q~~~~f~~-~~l~~-------~v--~~~~~~---~~~p~~~ 197 (480)
T pfam12236 132 RKGVIRFEAVPLGSYVVARDANG-NVVDIVFRRFSLTVRQIVQRFGL-DALSE-------EI--RKALED---GEKPEDK 197 (480)
T ss_pred CCCCCEEEEEECCEEEEEECCCC-CEEEEEEEEEECCHHHHHHHCCH-HHCCH-------HH--HHHHHC---CCCCCCE
T ss_conf 67762379963153999967999-97899999763249999986171-21897-------78--888752---7897865
Q ss_pred EEEEEEEEEEEECCCCCCCEEEEEEECCCCCEEEECCCCCCCCCEEEEEEEECCCCEECCCHHHHHCCHHHHHHHHHHHH
Q ss_conf 99999789986058987410899990787530464046555685689856306873203543543102899998998848
Q gi|254781145|r 121 IEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQT 200 (350)
Q Consensus 121 v~v~E~y~~~D~dgdg~~e~~~v~~~g~~~~~~il~~~~~~~~Pf~~~~~~p~p~~~~G~g~~d~l~~lQ~~~n~~~R~~ 200 (350)
+++|+|...-. | ++....+..+.........++...+.+..||..+.|...++..||+|+++...+..+.+|.+.+..
T Consensus 198 ~~v~~~V~~~~-d-~~~~~~~~s~~~~~~~~~~~l~e~g~~~~P~~~~Rw~~~~ge~YGrgp~~~~l~d~k~l~~l~~~~ 275 (480)
T pfam12236 198 VEIYHAVEPRA-D-DAKNMPFASYQEDAGKDVGVLSESGYDEFPYLVPRWEKIDGEAYGRSPVEDALPDVKSLNKLSEAL 275 (480)
T ss_pred EEEEEEEEECC-C-CCCCCCEEEEEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999846-7-778996699999768853034414788786666778737998657086999868999999999999
Q ss_pred HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87876303662253134312100001122574145046665544444456887656799999999999887524666430
Q gi|254781145|r 201 LDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSG 280 (350)
Q Consensus 201 lDn~~l~~~p~~~v~~~~~~~~~d~~~~~~g~~v~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~e~~tGi~~~~~G 280 (350)
+.+...++.|.+.+++++..++.++ ...+++.+..... ....+.|++..+..+.+...++.+++.+++...+.-+.+
T Consensus 276 ~~~~~~a~~p~~~v~~~~~~~~~~l-~~~~~~~i~~g~~-~~~~~~p~~~~~~~~~~~~~i~~~~~~I~~af~~d~~~~- 352 (480)
T pfam12236 276 LKAAAKASKPPWLVPPSGVTQPRDL-VPGGTGYVVTGVA-GDIGIKPLEKYADFQVAQAVIQDIRQRIREAFMVDLFQM- 352 (480)
T ss_pred HHHHHHHHCCCEEECCCCCCCCCEE-CCCCCCEEEECCC-CCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_conf 9999874268578576545474140-3578844742687-776500055678744999999999999999998753147-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCE
Q ss_conf 3544335513899999999999889-9999999999999999999999874885105989682
Q gi|254781145|r 281 FSPEILQNMTATATSLIEQSGVGQV-ELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQ 342 (350)
Q Consensus 281 ~~~~~~~~~TAt~is~~~~~a~~r~-~~~~R~~ae~~k~l~~~i~~l~~~~~~~~~~~ri~g~ 342 (350)
.++ .+.|||+++++++.....+ ..+.|.-.|++.|++.+++.++.+...=|..-+..|.
T Consensus 353 --~~~-~~~TAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~g~lp~~p~~~g~ 412 (480)
T pfam12236 353 --RDA-ERVTATEVRERAEEKEQLLGPVYSRLQEEFLSPLIERTFNILQRAGMLPPPPDELGV 412 (480)
T ss_pred --CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC
T ss_conf --788-877799999999999987607889999999999999999999977999999246088
No 2
>PHA00670 hypothetical protein
Probab=99.64 E-value=2.3e-12 Score=101.24 Aligned_cols=271 Identities=11% Similarity=0.007 Sum_probs=185.7
Q ss_pred CEEEEEEECHHHEEECCCCCCHHHCCEEEEEEEECHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 83689857658743467998864654899999956899987279804430277787641013320245654556751499
Q gi|254781145|r 43 GKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALEMIE 122 (350)
Q Consensus 43 ~~v~ie~V~pedf~vdp~A~~l~da~~v~hr~~~t~~eL~~~Gy~~d~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~ 122 (350)
+-++-.++|.-++++..++...=| -|.++..+|..+++.++-+ +. ++. .... ... .++..+.++
T Consensus 143 ~~irf~~~pl~~~~i~~d~~G~VD--tv~Rkf~mtarqi~~~fg~-~~---l~~----~v~~--~~~----~~p~~~~ve 206 (540)
T PHA00670 143 EVVVFQSSPIGDYYFAEDNRGQVD--TFYRQFRWTVAQMVQEFGD-EN---TSE----SVQS--KAE----EGSNEAWVE 206 (540)
T ss_pred CCCEEEEEECCCEEEECCCCCCEE--EEEEEEEECHHHHHHHCCC-CC---CCH----HHHH--HHH----CCCCCCEEE
T ss_conf 740268862110898318999812--6899998429999987053-32---998----9998--874----599766058
Q ss_pred EEEE-EEEEEECC---CCCCCEEEEEEECC-CCCEEEECCCCCCCCCEEEEEEEECCCCEECCCHHHHHCCHHHHHHHHH
Q ss_conf 9997-89986058---98741089999078-7530464046555685689856306873203543543102899998998
Q gi|254781145|r 123 YYEL-YVTIDYDG---DGIAELRRVIMAGG-TGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLL 197 (350)
Q Consensus 123 v~E~-y~~~D~dg---dg~~e~~~v~~~g~-~~~~~il~~~~~~~~Pf~~~~~~p~p~~~~G~g~~d~l~~lQ~~~n~~~ 197 (350)
|++| |-+.|.+- |....++..++... ....+++..--.+..||+.+.|...++..||+|++....+.-+.+|.+.
T Consensus 207 v~h~V~pr~d~d~~~~d~~n~pf~S~y~e~~~d~~~~l~esG~~e~P~~~~R~~~~~~e~YGr~p~~~al~d~k~ln~~~ 286 (540)
T PHA00670 207 VVHAVEPRADRDPSKLDPRNMPFKSVYFEKGGDEVRLLRESGYREFPALAPRWRVSGGDVYGFSPAMLALGDVRTLQREQ 286 (540)
T ss_pred EEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999866666632123467975799999647762133114766586456777626987667387888706799999999
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 848878763036622531343121000011225741450466-6554444445688765679999999999988752466
Q gi|254781145|r 198 RQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAG-MDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISD 276 (350)
Q Consensus 198 R~~lDn~~l~~~p~~~v~~~~~~~~~d~~~~~~g~~v~~~~~-~~~~~i~~~~~~~~~~~~~~~l~~~~~~~e~~tGi~~ 276 (350)
+..+.+...+++|.+.+++++... ..+..||++.....+ +....+.|++..........+++.+.+.+++..-+--
T Consensus 287 ~~~l~~a~~~v~pp~~vp~dg~~~---~v~l~PGgi~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~r~~I~~af~~D~ 363 (540)
T PHA00670 287 KRKAQSIDKVINPPLMAPESGKNQ---DISLGPGGLTYVDDMESNGGIRKAFEVNARFDVLLADIQDTRQTINRIYYVDL 363 (540)
T ss_pred HHHHHHHHHCCCCCEEECCCCCCC---CEEECCCCCEECCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999873047987747533547---31445775001367788867666310589944799999999999999999999
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 64303544335513899999999999889-9999999999999999999999874885
Q gi|254781145|r 277 ISSGFSPEILQNMTATATSLIEQSGVGQV-ELIVRTLAQGLEILFRGLLRLIIQHQDK 333 (350)
Q Consensus 277 ~~~G~~~~~~~~~TAt~is~~~~~a~~r~-~~~~R~~ae~~k~l~~~i~~l~~~~~~~ 333 (350)
+..-.+.+. .+.|||++...++--...+ ..+.|..+|++.|++.+++.++.+-.-=
T Consensus 364 f~~l~~~~~-~~mTAtEV~~R~~Ek~~~LGpv~~rl~~ElL~Pli~R~f~il~r~g~l 420 (540)
T PHA00670 364 FQMLANKDS-PAMTATEVQERYEEKLLMLGPVLERLENEFLSPLIQRTFNIMVRANKL 420 (540)
T ss_pred HHHCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 985457887-876799999999999987637888776888999999999999977999
No 3
>pfam05133 Phage_prot_Gp6 Phage portal protein, SPP1 Gp6-like. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. During SPP1 morphogenesis, Gp6 participates in the procapsid assembly reaction. This family also includes family Phage_min_cap, pfam05126.
Probab=98.78 E-value=3.2e-06 Score=60.37 Aligned_cols=167 Identities=16% Similarity=0.101 Sum_probs=116.5
Q ss_pred CCCCCCCCEEEEEEEECCCCEECCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC-CCCCCCCCCEEE
Q ss_conf 4655568568985630687320354354310289999899884887876303662253134312100-001122574145
Q gi|254781145|r 157 NEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPE-SVLNPQFGKPIR 235 (350)
Q Consensus 157 ~~~~~~~Pf~~~~~~p~p~~~~G~g~~d~l~~lQ~~~n~~~R~~lDn~~l~~~p~~~v~~~~~~~~~-d~~~~~~g~~v~ 235 (350)
..+++.+|++.|..-. .+ .+|.|..+.+.+++++.+.++++..+...-..++. .+..|.....+ .....+..+.+.
T Consensus 192 ~~~~g~vPvv~f~Nn~-~~-~~G~sd~e~v~~liDa~d~~~s~~~n~~~~~~~~~-lv~~g~~~~~~~~~~~~~~~~~~~ 268 (435)
T pfam05133 192 PHEFGRVPVVEFNNND-LR-SPGLSDLEPVKSLIDAYDKTLSEFANDFYDFPRAI-LVLKGYGEDDDEFVKDLKDAKLIR 268 (435)
T ss_pred CCCCCCCCEEEECCCC-CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE-EEECCCCCCCCHHHHHHHHCCCEE
T ss_conf 6888852659862585-44-56865177769999999999838778898742003-774177766515678777514301
Q ss_pred ECCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 04666-55444444568876567999999999998875246664303544335513899999999999889999999999
Q gi|254781145|r 236 VAAGM-DIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQ 314 (350)
Q Consensus 236 ~~~~~-~~~~i~~~~~~~~~~~~~~~l~~~~~~~e~~tGi~~~~~G~~~~~~~~~TAt~is~~~~~a~~r~~~~~R~~ae 314 (350)
+..+. .......+.........-+.++.+...+.+.|++++.+.+.-+ ++.++.++........++.+..-|.|.+
T Consensus 269 ~~~~~~~~~d~~~l~~~~~~~~~e~~~~~l~~~i~~~s~~~~~~~~~f~---~n~Sg~Alk~~~~~l~~ka~~~e~~f~~ 345 (435)
T pfam05133 269 LLDGAEDDGDAKFLTKQFPVASLENYLDALKQDIYEFAMVPDLPDEYFG---GNASGEALKAKYSLLDLKAERKERKFGE 345 (435)
T ss_pred CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1366678997048805688689999999999999998388999946608---8740999999998999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999987
Q gi|254781145|r 315 GLEILFRGLLRLIIQ 329 (350)
Q Consensus 315 ~~k~l~~~i~~l~~~ 329 (350)
+++.+++.+.+++..
T Consensus 346 ~l~~~~~li~~~~~~ 360 (435)
T pfam05133 346 ALRRLLRLALEILGD 360 (435)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999998667
No 4
>pfam07360 consensus
Probab=97.76 E-value=0.0039 Score=39.84 Aligned_cols=181 Identities=16% Similarity=0.135 Sum_probs=115.5
Q ss_pred CCCCCCEEEEEEEECCCCEECCCHHH-HHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCC----CCC----CCCCCCCC
Q ss_conf 55568568985630687320354354-3102899998998848878763036622531343----121----00001122
Q gi|254781145|r 159 EWNELPFTCLRAMRAPHCFIGESLAA-SIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGS----IID----PESVLNPQ 229 (350)
Q Consensus 159 ~~~~~Pf~~~~~~p~p~~~~G~g~~d-~l~~lQ~~~n~~~R~~lDn~~l~~~p~~~v~~~~----~~~----~~d~~~~~ 229 (350)
+.+..|.+-|+.-|...+.+|.|-.. -++++|+..+..+--+.-+.-..+.|+-.+- |. ... .+..+...
T Consensus 178 ~lG~~pvVp~~n~~~l~rp~G~SeIt~~vm~ltD~a~rtl~~m~vaaef~s~PqR~i~-G~~~~~f~~~~~~~~~~w~a~ 256 (412)
T pfam07360 178 GLGVPPVVPIPNRPRLVRPFGTSRITRDLMSLQDAAARTLERMQVTAEFYSFPQRYLL-GADPDELGVDDETGKPMWKAY 256 (412)
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-CCCHHHCCCCCCCCCCHHHHH
T ss_conf 9998745981367666899885224577899999999999989998886315135674-378776156676665268876
Q ss_pred CCCEEEECCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHH
Q ss_conf 5741450466655--4444445688765679999999999988752466643035443355-138999999999998899
Q gi|254781145|r 230 FGKPIRVAAGMDI--RSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQN-MTATATSLIEQSGVGQVE 306 (350)
Q Consensus 230 ~g~~v~~~~~~~~--~~i~~~~~~~~~~~~~~~l~~~~~~~e~~tGi~~~~~G~~~~~~~~-~TAt~is~~~~~a~~r~~ 306 (350)
.+.++-...+... ..+.+++..+..+ ...++..+.+.+--.||++....|...+ | .+|-++......-..+.+
T Consensus 257 ~~~i~a~~~~~~g~~p~vgQf~~asl~p-f~d~l~~~a~~~a~~t~lP~~~Lg~~~d---NPaSaeAi~Aae~~L~~~ae 332 (412)
T pfam07360 257 LARILAFPDDEDGDKPDVGQFPAASLAP-FTDALRQLAKLFAGETGLPPDYLGFSSD---NPASAEAIRASEERLIAAAE 332 (412)
T ss_pred HHHHHCCCCCCCCCCCCEEEECCCCCHH-HHHHHHHHHHHHHHHHCCCHHHHCCCCC---CCCCHHHHHHHHHHHHHHHH
T ss_conf 6666177764458999753326888516-8999999999988634789899622157---85549999998989999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-CCCHHEEEECCEEE
Q ss_conf 999999999999999999999874-88510598968268
Q gi|254781145|r 307 LIVRTLAQGLEILFRGLLRLIIQH-QDKVRMVRLRDQWV 344 (350)
Q Consensus 307 ~~~R~~ae~~k~l~~~i~~l~~~~-~~~~~~~ri~g~~v 344 (350)
...|.|.++++.++++...+.-.. ...++..++.=+|-
T Consensus 333 ~~~~~fG~~~~~v~~la~~~~~~~~~~~~~~~~~~v~Wr 371 (412)
T pfam07360 333 KAQRSFGGALENVARLAVALRDGFGYIPPEFKRIEVKWR 371 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEEC
T ss_conf 999987599999999999985388878655505615776
No 5
>pfam05126 consensus
Probab=97.54 E-value=0.0041 Score=39.69 Aligned_cols=271 Identities=13% Similarity=0.087 Sum_probs=144.0
Q ss_pred EEEEEEEEEEEECCEEEEEEECHHHEEECCCC-CCHHHCCEEEEEEEECHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHC
Q ss_conf 57758999997468368985765874346799-88646548999999568999872798044302777876410133202
Q gi|254781145|r 30 KVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDS-VDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKF 108 (350)
Q Consensus 30 ~~~~v~~~r~~~~~~v~ie~V~pedf~vdp~A-~~l~da~~v~hr~~~t~~eL~~~Gy~~d~v~~~~~~~~~~~~~~~~~ 108 (350)
-+..+.++-.++.+++||..|....|++-..- ..+-+|-|+ -++.++... . +.+.-.++...+.+....--.++.
T Consensus 113 AlGg~a~kpYvd~~~I~v~~v~Ad~f~Pl~~nt~~v~e~~~~-~~~~~~~~~--~-~~yYT~LE~H~~~~~~~Y~I~N~l 188 (473)
T pfam05126 113 ALGGFAMRPYVDGNKVKVAFATADQFYPLQSDTNDVSEAAIA-SRTTETENK--N-TKYYTLLEFHEWQDHDDYVITNEL 188 (473)
T ss_pred HHCCEEEEEEECCCEEEEEEEECCCEEEEEECCCCCEEEEEE-EEEEEEECC--C-CEEEEEEEEEEECCCCEEEEEEEE
T ss_conf 526658999984993899997137257303458884689999-777885068--8-458999999994268728998888
Q ss_pred CCCCCCCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEECCCCCEEEECCCCCCCCC-EEEEEE----EECCCCEECCCHH
Q ss_conf 45654556751499999789986058987410899990787530464046555685-689856----3068732035435
Q gi|254781145|r 109 PKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELP-FTCLRA----MRAPHCFIGESLA 183 (350)
Q Consensus 109 ~~~~~~d~~~~~v~v~E~y~~~D~dgdg~~e~~~v~~~g~~~~~~il~~~~~~~~P-f~~~~~----~p~p~~~~G~g~~ 183 (350)
-.....+.-+.+|-+.|.|-.+ .+ .+.+.| -..| |+.|.+ -....+.+|.|++
T Consensus 189 Y~s~~~~~lG~~v~L~~~~~dL-------~~--~v~i~g-------------~~rPlFaY~K~p~aNnid~~SPlGvSvy 246 (473)
T pfam05126 189 YRSDDPNEVGTKVPLSEVYKDL-------EP--QVKITD-------------LTRPLFAYIKTPGANNKNITSPLGLSVY 246 (473)
T ss_pred EECCCCHHCCCCCCCCHHHCCC-------CC--CEEECC-------------CCCCCEEEECCCCCCCCCCCCCCCCCHH
T ss_conf 8638931028542363000255-------71--225658-------------8866258874876776778999850437
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC---CCCCCCC--CCC-CEEEE-CCCC-CCCCCCCCCCCCCCH
Q ss_conf 43102899998998848878763036622531343121---0000112--257-41450-4666-554444445688765
Q gi|254781145|r 184 ASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIID---PESVLNP--QFG-KPIRV-AAGM-DIRSVLGIHSVPMIE 255 (350)
Q Consensus 184 d~l~~lQ~~~n~~~R~~lDn~~l~~~p~~~v~~~~~~~---~~d~~~~--~~g-~~v~~-~~~~-~~~~i~~~~~~~~~~ 255 (350)
+...++-+.++.....++.-.-+. .-++.|++..+.. .+..... .+. .+++. .+.. ....+..+.++--..
T Consensus 247 anA~~~lk~iD~~yd~~~wE~e~g-~~rI~V~~s~lk~~~~~~g~~~p~fd~~~~vy~~~~~~~~~~~~i~d~~~~iR~~ 325 (473)
T pfam05126 247 DNAKTTLDTINLTHDQFYWEVKLG-QKRVAVPSSFLKTAVRLDGSHTPYFDSDQNVYFLMQGDDDNGKAIKDITTPIRST 325 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-EEEEECCHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEECCCCCHHH
T ss_conf 507989999999989999997645-0789828999603778888847777864111011256787787734656420079
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67999999999998875246664303544335513899999999999889999999999999999999999987
Q gi|254781145|r 256 KSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329 (350)
Q Consensus 256 ~~~~~l~~~~~~~e~~tGi~~~~~G~~~~~~~~~TAt~is~~~~~a~~r~~~~~R~~ae~~k~l~~~i~~l~~~ 329 (350)
+.+..++.+-..++...|.+--.-..+++ .-+|||++..--+..=+.++.+...+.+++++|...+..|..-
T Consensus 326 ~~~~~in~~L~~ie~~~Gls~Gtfs~d~~--g~KTATEI~S~ns~ty~t~~~~~~~le~aL~~Lv~ai~ela~~ 397 (473)
T pfam05126 326 DYIEAINAFLREFEMQIGLSAGTFTFDEN--GLKTATEVVSENSETYQTRNSYSTLVEQGIKELIVSILELAKA 397 (473)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999873836660246887--6322356750530777989999999999999999999999866
No 6
>TIGR01542 A118_put_portal phage portal protein, putative, A118 family; InterPro: IPR006432 These sequences represent a family of phage minor structural proteins. The protein is suggested to be the head-tail connector, or portal protein, on the basis of its position in the phage gene order, its presence in mature phage, its size, and its conservation across a number of complete genomes of tailed phage that lack other candidate portal proteins. Several other known portal protein families lack clear homology to this family and to each other ..
Probab=84.29 E-value=2.9 Score=20.70 Aligned_cols=288 Identities=14% Similarity=0.093 Sum_probs=164.1
Q ss_pred CCCCCCEEEEEEEEEEEECCE-EEEEEECHHHEEE-CCCCCCHHHCCEEEEEEEECHHHHHHHCCCCHHHCCCCCCCCCC
Q ss_conf 466761577589999974683-6898576587434-67998864654899999956899987279804430277787641
Q gi|254781145|r 24 REDGGEKVHDLRIRRKYSQGK-VCVDAVSPDEFLI-HPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQN 101 (350)
Q Consensus 24 ~~~~~~~~~~v~~~r~~~~~~-v~ie~V~pedf~v-dp~A~~l~da~~v~hr~~~t~~eL~~~Gy~~d~v~~~~~~~~~~ 101 (350)
.-|.+.-+.+..+|-.++-++ |||-.+-..-||+ ..++.+.++| -|+.|...+.+. ++ .|.-.++-..+.++++
T Consensus 109 ylE~~~AlGg~~~rpYvDg~KnvkvafatAd~~yPL~~dt~~V~e~-aia~~~~~~~n~-~~--~YYTLlEfheWQ~~dd 184 (489)
T TIGR01542 109 YLEEGLALGGLVVRPYVDGDKNVKVAFATADVVYPLQADTEDVDEL-AIASKSVKSINK-KE--VYYTLLEFHEWQDSDD 184 (489)
T ss_pred HHHHHHHHCCEEEEEEEECCCEEEEEEEECCEECCCCCCCCCCCCE-EEEEEEEEEECC-CE--EEEEEEEECCCCCCCC
T ss_conf 8665542077049877708972899997557205766672121203-455421233207-51--3577521000058997
Q ss_pred HHHHHHCCCCCCCCCCCCEEEEE--EEEEEEEECCCCCCCEEEEEEECCCCCEEEECCCCCCCCCEEE-EEE----EECC
Q ss_conf 01332024565455675149999--9789986058987410899990787530464046555685689-856----3068
Q gi|254781145|r 102 IENTWKFPKNQYSDKALEMIEYY--ELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTC-LRA----MRAP 174 (350)
Q Consensus 102 ~~~~~~~~~~~~~d~~~~~v~v~--E~y~~~D~dgdg~~e~~~v~~~g~~~~~~il~~~~~~~~Pf~~-~~~----~p~p 174 (350)
.--.++.-+-+....-+-+|-+. |.|- |+. + .|-+.+ -.+|..+ +.+ -..-
T Consensus 185 YvitnELYrSdd~~~vG~~VpL~sle~y~-------dle-p-~vk~td-------------~~rP~F~y~k~~gaNNKn~ 242 (489)
T TIGR01542 185 YVITNELYRSDDKEKVGIKVPLSSLELYE-------DLE-P-EVKVTD-------------LTRPLFIYLKTKGANNKNL 242 (489)
T ss_pred EEEECCCCCCCCHHHCCCCCCCHHHHHHC-------CCC-C-CCCCCC-------------CCCCEEEEECCCCCCCCCC
T ss_conf 58844431446521078635411455423-------888-8-304788-------------9875377635787887777
Q ss_pred CCEECCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC---C-CCCCCCCCC-------CCEEEECC--CCC
Q ss_conf 7320354354310289999899884887876303662253134312---1-000011225-------74145046--665
Q gi|254781145|r 175 HCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSII---D-PESVLNPQF-------GKPIRVAA--GMD 241 (350)
Q Consensus 175 ~~~~G~g~~d~l~~lQ~~~n~~~R~~lDn~~l~~~p~~~v~~~~~~---~-~~d~~~~~~-------g~~v~~~~--~~~ 241 (350)
.|.-|+|+.+...+.-+.+|....+.++-.-+ ...|+.|+..-+. + ..+.-...+ ..-+++.| ...
T Consensus 243 tSPlG~S~~dNa~ttid~in~t~D~f~~EvK~-G~rrv~VP~s~~kt~v~y~~~~d~~~~p~Fdsd~~vy~~m~G~qD~~ 321 (489)
T TIGR01542 243 TSPLGLSVYDNALTTIDAINLTYDEFVDEVKL-GQRRVLVPESLVKTAVRYTTDADESTRPRFDSDEEVYILMQGDQDAD 321 (489)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
T ss_conf 77310688986789999873023457899761-87157512456752310135678878988796145653204751554
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54444445688765679999999999988752466643035443355138999-99999999889999999999999999
Q gi|254781145|r 242 IRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATAT-SLIEQSGVGQVELIVRTLAQGLEILF 320 (350)
Q Consensus 242 ~~~i~~~~~~~~~~~~~~~l~~~~~~~e~~tGi~~~~~G~~~~~~~~~TAt~i-s~~~~~a~~r~~~~~R~~ae~~k~l~ 320 (350)
..++.-+..|==+..-...++.+-...+-.+|+|--.=-.++.++ +|||++ +--.+-=|+| ..+...+..++|.|.
T Consensus 322 ~~ai~D~t~pIR~~dyi~~in~~Lr~fe~Q~GlSaGtFtfd~~g~--kTATEvVse~S~TYQtr-nS~~~lvEq~iKel~ 398 (489)
T TIGR01542 322 EKAIKDLTVPIRAADYIEAINAFLRLFEMQVGLSAGTFTFDEKGL--KTATEVVSENSETYQTR-NSYVALVEQSIKELV 398 (489)
T ss_pred CCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCC--EEEEEEEECCCCCCHHH-HHHHHHHHHHHHHHH
T ss_conf 566031565434588999999887787644101253133277745--14222450787641235-678998987799999
Q ss_pred HHHHHHHHHH--CCCHHEEEECCE
Q ss_conf 9999999874--885105989682
Q gi|254781145|r 321 RGLLRLIIQH--QDKVRMVRLRDQ 342 (350)
Q Consensus 321 ~~i~~l~~~~--~~~~~~~ri~g~ 342 (350)
-.|+++..-+ +.. .+.|-+|.
T Consensus 399 ~sIlE~ak~~~~Y~~-ev~rWtG~ 421 (489)
T TIGR01542 399 VSILEVAKVIELYAD-EVARWTGE 421 (489)
T ss_pred HHHHHHHHHHHHCCC-CCCEEECC
T ss_conf 999988536654058-82135233
No 7
>pfam09978 consensus
Probab=82.84 E-value=3.3 Score=20.32 Aligned_cols=141 Identities=19% Similarity=0.133 Sum_probs=69.3
Q ss_pred CCEECCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECC-CCCCCC---CCCCCCC---------CCEEEECCCCC
Q ss_conf 7320354354310289999899884887876303662253134-312100---0011225---------74145046665
Q gi|254781145|r 175 HCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEG-SIIDPE---SVLNPQF---------GKPIRVAAGMD 241 (350)
Q Consensus 175 ~~~~G~g~~d~l~~lQ~~~n~~~R~~lDn~~l~~~p~~~v~~~-~~~~~~---d~~~~~~---------g~~v~~~~~~~ 241 (350)
..+||.|+.+.+.+.=+.-...+...-+-+.......+.+..- .+.+.+ +.+..+. .+..-....
T Consensus 71 ~~~wG~Svlq~~~d~v~~~~~t~~~~~~Ll~~~~~~v~k~~gl~~~~~~~~~~~~l~~r~~~~~~~rs~~g~~~lD~e-- 148 (270)
T pfam09978 71 YNFWGDSVLQSLYDRVKAADRTTASAAQLVYEARVDVIKVDGLRELLADGGAAAELLERLDLIARFRSNNGLLVIDAE-- 148 (270)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEECCC--
T ss_conf 376780089999999999999998899999862301473143988850865089999999999983732272665375--
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 544444456887656799999999999887524666----4303544335513899999999999889999999999999
Q gi|254781145|r 242 IRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDI----SSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLE 317 (350)
Q Consensus 242 ~~~i~~~~~~~~~~~~~~~l~~~~~~~e~~tGi~~~----~~G~~~~~~~~~TAt~is~~~~~a~~r~~~~~R~~ae~~k 317 (350)
..+.....+. + .+- +.+++..+..+|++++ .-|.+|..+ .|||-+-+.+-. +.+.+....-++
T Consensus 149 -Ee~~~~~~~~-s-Gl~---dvl~~~~~~va~a~~iP~t~L~G~sP~Gl---natGe~d~~~yy----d~i~~~Qe~~l~ 215 (270)
T pfam09978 149 -EEYEQKSTSF-S-GLD---DVLDQFAQQLAGASDIPLTRLLGQSPAGL---NSTGESDLRNYY----DRIASIQENELR 215 (270)
T ss_pred -CEEEEECCCC-C-CHH---HHHHHHHHHHHHHHCCCHHHHCCCCCCCC---CCCCHHHHHHHH----HHHHHHHHHHHH
T ss_conf -4046605777-8-989---99999999999871786666347899876---776434899999----999999998877
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999874
Q gi|254781145|r 318 ILFRGLLRLIIQH 330 (350)
Q Consensus 318 ~l~~~i~~l~~~~ 330 (350)
+.+++++.+++..
T Consensus 216 p~l~~l~~~i~~s 228 (270)
T pfam09978 216 PLLERLIDLLVRS 228 (270)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999787
No 8
>TIGR01780 SSADH succinic semialdehyde dehydrogenase; InterPro: IPR010102 Succinic semialdehyde dehydrogenase is one of three enzymes constituting 4-aminobutyrate (GABA) degradation in both prokaryotes and eukaryotes, catalysing the (NAD(P)+)-dependent catabolism reaction of succinic semialdehyde to succinate for metabolism by the citric acid cycle. In Escherichia coli, succinic semialdehyde dehydrogenase is located in a unidirectionally transcribed gene cluster encoding enzymes for GABA degradation and is suggested to be co-transcribed with succinic semialdehyde transaminase from a common promoter upstream of SSADH . Similar gene arrangements can be found in characterised Ralstonia eutropha and the genome analysis of Bacillus subtilis. Prokaryotic succinic semialdehyde dehydrogenases (1.2.1.16 from EC) share high sequence homology to characterised succinic semialdehyde dehydrogenases from rat and human (1.2.1.24 from EC), exhibiting conservation of proposed cofactor binding residues, and putative active sites (G-237 and G-242, C-293 and G-259 respectively of rat SSADH) . Eukaryotic SSADH enzymes exclusively utilise NAD+ as a cofactor, exhibiting little to no NADP+ activity . While a NADP+ preference has been detected in prokaryotes in addition to both NADP+- and NAD+-dependencies as in Escherichia coli, Pseudomonas, and Klebsiella pneumoniae . The function of this alternative SSADH currently is unknown, but has been suggested to play a possible role in 4-hydroxyphenylacetic degradation . SSADH enzyme belongs to the aldehyde dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase . Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family. ; GO: 0016620 oxidoreductase activity acting on the aldehyde or oxo group of donors NAD or NADP as acceptor.
Probab=78.45 E-value=3.8 Score=19.94 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q gi|254781145|r 312 LAQGLEILFRGLLRL 326 (350)
Q Consensus 312 ~ae~~k~l~~~i~~l 326 (350)
+++|.+.|-+++-+|
T Consensus 277 ~D~Fa~kL~e~V~kl 291 (454)
T TIGR01780 277 YDEFAKKLAEAVKKL 291 (454)
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 048899999863313
No 9
>COG3567 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.65 E-value=5.2 Score=19.03 Aligned_cols=165 Identities=18% Similarity=0.186 Sum_probs=79.3
Q ss_pred EEEEEEEECCCC---EECCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEE---EECC
Q ss_conf 689856306873---2035435431028999989988488787630366225313431210000112257414---5046
Q gi|254781145|r 165 FTCLRAMRAPHC---FIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPI---RVAA 238 (350)
Q Consensus 165 f~~~~~~p~p~~---~~G~g~~d~l~~lQ~~~n~~~R~~lDn~~l~~~p~~~v~~~~~~~~~d~~~~~~g~~v---~~~~ 238 (350)
.++|.--.-|.. +||.|+.+.+.+.-+......-.+-+-..-+..-.+-+ .+..+.+...-+... ++.-
T Consensus 190 lii~qgn~~p~e~n~~wg~Svles~~d~lkr~Dta~anvgsl~feakidv~Ki-----~~l~~~lssd~~n~~a~~~f~l 264 (452)
T COG3567 190 LIIFQGNELPWERNGYWGDSVLESMYDALKRYDTATANVGSLFFEAKIDVLKI-----SGLSDTLSSDQGNQEAHKRFQL 264 (452)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE-----CCHHHHHCCCCHHHHHHHHHHH
T ss_conf 46650445877546751078999999999985012243787887752015762-----6746442154011689999999
Q ss_pred CCCCCCCCC--------CCCCCCCHHHHH-HHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 665544444--------456887656799-999999999887524666----4303544335513899999999999889
Q gi|254781145|r 239 GMDIRSVLG--------IHSVPMIEKSFS-MLHYLDQELVDRTGISDI----SSGFSPEILQNMTATATSLIEQSGVGQV 305 (350)
Q Consensus 239 ~~~~~~i~~--------~~~~~~~~~~~~-~l~~~~~~~e~~tGi~~~----~~G~~~~~~~~~TAt~is~~~~~a~~r~ 305 (350)
.....++.. ..... ..|. +=+.+++.....+|..++ .-|+.|.++ ++ |-+-+++ --
T Consensus 265 ~~~a~ain~llld~eeeytqks---~sfsglkDlLd~f~~~vaGAadmP~T~L~GQs~~gl---~s-gd~Di~N----Yy 333 (452)
T COG3567 265 AAMAKAINMLLLDAEEEYTQKS---NSFSGLKDLLDQFMMDVAGAADMPATRLFGQSPKGL---NS-GDSDIRN----YY 333 (452)
T ss_pred HHHHHHHHHHHHCHHHHHHHHC---CCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCC---CC-CHHHHHH----HH
T ss_conf 9999988888623066765520---453457999999999851313474355226676556---65-4477899----99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCEEEEECC
Q ss_conf 9999999999999999999999874885105989682685257
Q gi|254781145|r 306 ELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDP 348 (350)
Q Consensus 306 ~~~~R~~ae~~k~l~~~i~~l~~~~~~~~~~~ri~g~~v~vdp 348 (350)
.-+.+....-++|.++.+..+++.-...... ..=|.+++|
T Consensus 334 drisa~QE~rLrP~Le~Ld~lL~~as~g~~P---~Dw~iEfnp 373 (452)
T COG3567 334 DRISAQQEDRLRPVLEVLDALLFRASVGECP---QDWEIEFNP 373 (452)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC---CCCEEECCC
T ss_conf 9988877740054999999999998618999---760576151
No 10
>pfam06381 DUF1073 Protein of unknown function (DUF1073). This family consists of several hypothetical bacterial proteins. The function of this family is unknown.
Probab=74.07 E-value=6 Score=18.59 Aligned_cols=143 Identities=19% Similarity=0.139 Sum_probs=67.1
Q ss_pred CCEECCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCC-CCCCCC--CCCCCC---------CCEEEECCCCCC
Q ss_conf 73203543543102899998998848878763036622531343-121000--011225---------741450466655
Q gi|254781145|r 175 HCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGS-IIDPES--VLNPQF---------GKPIRVAAGMDI 242 (350)
Q Consensus 175 ~~~~G~g~~d~l~~lQ~~~n~~~R~~lDn~~l~~~p~~~v~~~~-~~~~~d--~~~~~~---------g~~v~~~~~~~~ 242 (350)
..|||.|+...+.+.=+.....+...-+-+.......+.+..-+ +.+.++ .+.-+. .+.......
T Consensus 164 ~~~wG~Svlq~~~d~l~~~~~t~~~~~~ll~~~~~~v~k~~~l~~~~~~~~~~~l~~rl~~~~~~~s~~g~~~lD~e--- 240 (361)
T pfam06381 164 YNFWGDSVLQSLYDALKAADRTTNSAAQLVFKARLTVIKVDGLRALLAAGGGDELIERLDLIKRTRSNEGILVIDAE--- 240 (361)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCC---
T ss_conf 47666628999999999999999999988876410005435489886378679999999999970865372676165---
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44444456887656799999999999887524666----43035443355138999999999998899999999999999
Q gi|254781145|r 243 RSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDI----SSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEI 318 (350)
Q Consensus 243 ~~i~~~~~~~~~~~~~~~l~~~~~~~e~~tGi~~~----~~G~~~~~~~~~TAt~is~~~~~a~~r~~~~~R~~ae~~k~ 318 (350)
..+.....+. + .+- +.+++..+.++|++++ .-|.+|..+ | |||=+-+.+- -..+......-+++
T Consensus 241 e~~e~~~~~l-s-Gl~---dvl~~~~~~iaaas~iP~t~LfG~sp~Gl-n--atGe~d~~nY----yd~i~~~Qe~~l~p 308 (361)
T pfam06381 241 EELEQISYSL-S-GLD---DVLDQFAQQLAGASDIPLTRLFGQSPAGL-N--STGEGDLRNY----YDRIKGIQENELRP 308 (361)
T ss_pred CEEEEECCCC-C-CHH---HHHHHHHHHHHHHHCCCHHHHCCCCCCCC-C--CCCHHHHHHH----HHHHHHHHHHHHHH
T ss_conf 4146624676-7-889---99999999988750797677538899876-8--7761189999----99999999988768
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999987488
Q gi|254781145|r 319 LFRGLLRLIIQHQD 332 (350)
Q Consensus 319 l~~~i~~l~~~~~~ 332 (350)
.+.+++.+++....
T Consensus 309 ~l~~l~~~i~~s~~ 322 (361)
T pfam06381 309 LLERLIELLVLSEL 322 (361)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999988753
No 11
>pfam12419 DUF3670 SNF2 Helicase protein. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00271, pfam00176. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=72.12 E-value=2 Score=21.83 Aligned_cols=17 Identities=59% Similarity=1.081 Sum_probs=14.1
Q ss_pred CHHEEEECCEEEEECCC
Q ss_conf 51059896826852578
Q gi|254781145|r 333 KVRMVRLRDQWVSFDPR 349 (350)
Q Consensus 333 ~~~~~ri~g~~v~vdpr 349 (350)
....||++|+||.+||+
T Consensus 96 ~~~LV~~rg~WV~vD~~ 112 (140)
T pfam12419 96 KRPLVRLRGQWVELDPE 112 (140)
T ss_pred CCCEEEECCEEEEECHH
T ss_conf 89809998999996899
No 12
>TIGR01538 portal_SPP1 phage portal protein, SPP1 family; InterPro: IPR006428 This group of sequences represent one of several distantly related families of phage portal protein. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. It functions as a dodecamer of a single polypeptide of average mol. wt. of 40-90 kDa. .
Probab=67.48 E-value=8.4 Score=17.65 Aligned_cols=152 Identities=13% Similarity=0.070 Sum_probs=99.3
Q ss_pred CCEECCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC-------------------CCCCCCCCEEE
Q ss_conf 73203543543102899998998848878763036622531343121000-------------------01122574145
Q gi|254781145|r 175 HCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPES-------------------VLNPQFGKPIR 235 (350)
Q Consensus 175 ~~~~G~g~~d~l~~lQ~~~n~~~R~~lDn~~l~~~p~~~v~~~~~~~~~d-------------------~~~~~~g~~v~ 235 (350)
..=-++|..+.+.+|-++=|++....++...-=+-..+ +--|....+++ +++..| +|.
T Consensus 243 nnee~~sdfe~~~sLid~Yd~~~s~~~~~~~~fsD~~L-~~~G~~~~~~~~~~~~~~R~~~~~~~~~~rllnleP--Pvd 319 (477)
T TIGR01538 243 NNEERMSDFESLISLIDAYDKAQSDTANDVEDFSDALL-VIFGKALEEEDVKEIRANRVEYEKVIREERLLNLEP--PVD 319 (477)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHCCCCCCHHHHHHHCCEEECCCCCCCEECCCC--CCC
T ss_conf 37554527888988986555552044003778889999-998410477535788752100110554100010578--867
Q ss_pred ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 046665544444456887656799999999999887524666430354433-5513899999999999889999999999
Q gi|254781145|r 236 VAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEIL-QNMTATATSLIEQSGVGQVELIVRTLAQ 314 (350)
Q Consensus 236 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~e~~tGi~~~~~G~~~~~~-~~~TAt~is~~~~~a~~r~~~~~R~~ae 314 (350)
-.+......+-.|..+.....+-..++.+...+-..|-+++.+ +... ++.|.-++.=...+..+.....-|.|..
T Consensus 320 qdGreg~~Dv~~L~k~~~~~~~~~~~~ri~~~i~k~~~~~d~~----De~f~G~~sG~AL~~k~~~L~~~~~~~qr~f~~ 395 (477)
T TIGR01538 320 QDGREGDVDVKYLEKEFDVDQTEKLLERIEDDIHKITQVPDMS----DEKFGGSASGEALKYKLFGLDNLAVIAQRKFEA 395 (477)
T ss_pred CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4775367630242306886689999875787677640466798----443367772489999999876898998899987
Q ss_pred HHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999874885
Q gi|254781145|r 315 GLEILFRGLLRLIIQHQDK 333 (350)
Q Consensus 315 ~~k~l~~~i~~l~~~~~~~ 333 (350)
|+|.-|+++.++...-...
T Consensus 396 sL~~rykL~~~~~~~~~~~ 414 (477)
T TIGR01538 396 SLRRRYKLIAEVSRNVGEK 414 (477)
T ss_pred HHHHHHHHHHHHHHHHCCC
T ss_conf 6778999999999983146
No 13
>TIGR01555 phge_rel_HI1409 phage-associated protein, HI1409 family; InterPro: IPR006445 This group describes an uncharacterised family of proteins found in prophage regions of a number of bacterial genomes, including Haemophilus influenzae, Xylella fastidiosa, Salmonella typhi, and Enterococcus faecalis. Distantly related proteins can be found in the prophage-bearing plasmids of Borrelia burgdorferi..
Probab=45.49 E-value=19 Score=15.24 Aligned_cols=225 Identities=16% Similarity=0.124 Sum_probs=113.3
Q ss_pred CCCEEEEEEEEEE-E----EECCCCCCC----EEEEEEECCCCCEEEECCCCCCCCCEEEEEEEECCCC--------EEC
Q ss_conf 7514999997899-8----605898741----0899990787530464046555685689856306873--------203
Q gi|254781145|r 117 ALEMIEYYELYVT-I----DYDGDGIAE----LRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHC--------FIG 179 (350)
Q Consensus 117 ~~~~v~v~E~y~~-~----D~dgdg~~e----~~~v~~~g~~~~~~il~~~~~~~~Pf~~~~~~p~p~~--------~~G 179 (350)
+.+.+.|...|-- . -+|.|-.++ ...+.++|.+....+-..+.+++-=..++.--..||. .||
T Consensus 126 s~ksl~~l~~w~~k~~~~g~~D~DvfSpnyGq~~~y~i~g~s~nsrih~~~~v~~SR~~~i~~~~~phq~~~~~~n~~wg 205 (426)
T TIGR01555 126 SLKSLIVLDKWKVKKLSSGQIDEDVFSPNYGQIESYEIAGSSNNSRIHLLERVDYSRLLIISASEVPHQQELLSENELWG 205 (426)
T ss_pred CEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHCCCCCCC
T ss_conf 42243520143410157873146778888887405786177654123320011034655534330213555413687224
Q ss_pred CCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEEE----CCCC---CCCCCCCCCCCC
Q ss_conf 543543102899998998848878763036622531343121000011225741450----4666---554444445688
Q gi|254781145|r 180 ESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRV----AAGM---DIRSVLGIHSVP 252 (350)
Q Consensus 180 ~g~~d~l~~lQ~~~n~~~R~~lDn~~l~~~p~~~v~~~~~~~~~d~~~~~~g~~v~~----~~~~---~~~~i~~~~~~~ 252 (350)
.|+.+.|.++-....+..-..-+-.+=+..-.+-...=+-.-..|-.+...-..+.+ +... ...+--.+....
T Consensus 206 ~S~Le~~yd~L~r~Dta~~~vg~~~fe~~~dv~kiaglsd~~s~dq~~~~v~~~~~~~~~~Ks~~~~lllDae~ey~~k~ 285 (426)
T TIGR01555 206 SSLLEKLYDVLKRYDTAVASVGDLLFEAVVDVYKIAGLSDKLSADQLENEVEKEIKLAASIKSAEAILLLDAEEEYDKKE 285 (426)
T ss_pred CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCC
T ss_conf 41799999998642201335898998766544300463003666510468999998999888777876411211046301
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7656799999999999887524666-430354433551389999999999988999999999999999999999998748
Q gi|254781145|r 253 MIEKSFSMLHYLDQELVDRTGISDI-SSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQ 331 (350)
Q Consensus 253 ~~~~~~~~l~~~~~~~e~~tGi~~~-~~G~~~~~~~~~TAt~is~~~~~a~~r~~~~~R~~ae~~k~l~~~i~~l~~~~~ 331 (350)
. ..-.+=+.++++...++|..++ .+-+-+.+..+.||||-+=+++ --+-|.+....-+||.++.++.+++.-.
T Consensus 286 ~--sf~G~kell~~f~~~~aGAAdmP~T~LfGQs~~g~~~tgd~Di~N----Yy~rI~a~QE~~LRPvLevL~~~L~~a~ 359 (426)
T TIGR01555 286 S--SFAGVKELLDEFRDDVAGAADMPKTVLFGQSGKGLAATGDEDIRN----YYERIKALQEDRLRPVLEVLDAVLMRAE 359 (426)
T ss_pred C--CCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 0--013368999999987520111663144157886422353034541----7989878404205838899999986652
Q ss_pred CCHHEEEECCE----EEEECC
Q ss_conf 85105989682----685257
Q gi|254781145|r 332 DKVRMVRLRDQ----WVSFDP 348 (350)
Q Consensus 332 ~~~~~~ri~g~----~v~vdp 348 (350)
.... =||.-+ ||+++|
T Consensus 360 ~g~G-Grl~Pdsidw~~eFnp 379 (426)
T TIGR01555 360 VGEG-GRLDPDSIDWEVEFNP 379 (426)
T ss_pred CCCC-CCCCCCEEEEEEEECC
T ss_conf 4888-7548850346887516
No 14
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase; InterPro: IPR005933 The delta(1)-pyrroline-5-carboxylate synthetase (1.5.1.12 from EC) a mitochondrial inner membrane, ATP- and NADPH-dependent, bifunctional enzyme, catalyzes the reduction of glutamate to delta1-pyrroline-5-carboxylate, a critical step in the de novo biosynthesis of proline and ornithine. It is the rate-limiting enzyme in proline biosynthesis and is subject to feedback inhibition by proline. 1-pyrroline-5-carboxylate + NAD+ + H2O = L-glutamate + NADH This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch include the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase. ; GO: 0003842 1-pyrroline-5-carboxylate dehydrogenase activity, 0006561 proline biosynthetic process.
Probab=39.92 E-value=12 Score=16.52 Aligned_cols=25 Identities=36% Similarity=0.335 Sum_probs=10.2
Q ss_pred EEEEEEEEEEECCEEEEEEECHHHE
Q ss_conf 7758999997468368985765874
Q gi|254781145|r 31 VHDLRIRRKYSQGKVCVDAVSPDEF 55 (350)
Q Consensus 31 ~~~v~~~r~~~~~~v~ie~V~pedf 55 (350)
.+|+..||+-.+|.=.+-+|+||||
T Consensus 167 sfdGstrrvsrqG~G~~VcISPWNF 191 (525)
T TIGR01238 167 SFDGSTRRVSRQGLGAVVCISPWNF 191 (525)
T ss_pred CCCCCCCEEEECCCCCEEEECCCCC
T ss_conf 4476421231057501688678751
No 15
>pfam00862 Sucrose_synth Sucrose synthase. Sucrose synthases catalyse the synthesis of sucrose from UDP-glucose and fructose. This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family pfam00534.
Probab=38.62 E-value=24 Score=14.55 Aligned_cols=137 Identities=11% Similarity=0.117 Sum_probs=73.9
Q ss_pred CCCCCEEEEEEEECCCCEECC----CHHH------HHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 556856898563068732035----4354------310289999899884887876303662253134312100001122
Q gi|254781145|r 160 WNELPFTCLRAMRAPHCFIGE----SLAA------SIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQ 229 (350)
Q Consensus 160 ~~~~Pf~~~~~~p~p~~~~G~----g~~d------~l~~lQ~~~n~~~R~~lDn~~l~~~p~~~v~~~~~~~~~d~~~~~ 229 (350)
..++|.+--.-+--||.+||. |.+| .+.|--+++-..++..+.-..+...|++.+..--+.+-+...-..
T Consensus 266 l~RiPmvF~vvi~SpHGyFgQ~~VLG~PDTGGQVVYILDQvRaLE~em~~rik~qGLdi~P~IlIvTRLIP~a~GT~Cnq 345 (550)
T pfam00862 266 LGRIPMVFNVVILSPHGYFAQANVLGYPDTGGQVVYILDQVRALESEMLVRIKQQGLDITPRILIVTRLLPDAVGTTCNQ 345 (550)
T ss_pred HHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 73265016899965764002357577899897599971777889999999999758887760899974046888983585
Q ss_pred C-----C----CEEEECCCCCCCCCCCCCCCCCCH-HHHHHHHHHH-----HHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 5-----7----414504666554444445688765-6799999999-----99988752466643035443355138999
Q gi|254781145|r 230 F-----G----KPIRVAAGMDIRSVLGIHSVPMIE-KSFSMLHYLD-----QELVDRTGISDISSGFSPEILQNMTATAT 294 (350)
Q Consensus 230 ~-----g----~~v~~~~~~~~~~i~~~~~~~~~~-~~~~~l~~~~-----~~~e~~tGi~~~~~G~~~~~~~~~TAt~i 294 (350)
. | -+.|+.=.... .+ -...++. ++++.|+.+- +...+.-|-+|..-|.-.|. |--|+=+
T Consensus 346 rlEkv~gT~~~~ILRVPFR~~~-gi---~~~WISRFeiwPYLE~fa~Da~~ei~~el~g~PDLIIGNYSDG--NLVAsLl 419 (550)
T pfam00862 346 RLEKVFGTEHTHILRVPFRTEK-GI---LRKWISRFEVWPYLETFAEDVASEIAAELQAKPDLIIGNYSDG--NLVASLL 419 (550)
T ss_pred EEEECCCCCCCEEEECCCCCCC-CC---HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC--HHHHHHH
T ss_conf 3001058765148972246899-81---4435455111187788889999999998489988798417772--2999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254781145|r 295 SLIEQSGV 302 (350)
Q Consensus 295 s~~~~~a~ 302 (350)
+..+..-|
T Consensus 420 a~klgVTQ 427 (550)
T pfam00862 420 AHKLGVTQ 427 (550)
T ss_pred HHHCCCCE
T ss_conf 86538710
No 16
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=35.97 E-value=27 Score=14.28 Aligned_cols=16 Identities=19% Similarity=-0.114 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9889999999999999
Q gi|254781145|r 302 VGQVELIVRTLAQGLE 317 (350)
Q Consensus 302 ~~r~~~~~R~~ae~~k 317 (350)
-++....+-.=|+.++
T Consensus 349 L~~~s~~AvLNANYl~ 364 (490)
T PRK04366 349 LREVSEDAVLNANYLM 364 (490)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8999999999999999
No 17
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=35.74 E-value=10 Score=17.07 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=33.0
Q ss_pred CCCCCEEEEEE----EECCCCEECCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 55685689856----3068732035435431028999989988488787630366
Q gi|254781145|r 160 WNELPFTCLRA----MRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQP 210 (350)
Q Consensus 160 ~~~~Pf~~~~~----~p~p~~~~G~g~~d~l~~lQ~~~n~~~R~~lDn~~l~~~p 210 (350)
.+..-.+-|+| .+..|=|-|.-+...+.+.|.+++.+.++=.+.+.||.+=
T Consensus 349 lG~r~iTEFnYR~a~~~~A~IFVGv~~~~~l~e~~~l~~~L~~~Gy~~~DLtdde 403 (508)
T TIGR01124 349 LGNRNITEFNYRYADDEDAHIFVGVQLANPLQERQELLARLNEAGYKVVDLTDDE 403 (508)
T ss_pred CCCCEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCC
T ss_conf 1796033443246868975589865248615689999999972889441177453
No 18
>TIGR00601 rad23 UV excision repair protein Rad23; InterPro: IPR004806 All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. Rad23 contains a ubiquitin-like domain that interacts with catalytically active proteasomes and two ubiquitin (Ub)-associated (UBA) sequences that bind Ub. Rad23 interacts with ubiquitinated cellular proteins through the synergistic action of its UBA domains. In humans, Rad23 complexes with the XPC protein.; GO: 0006289 nucleotide-excision repair, 0005634 nucleus.
Probab=31.90 E-value=19 Score=15.33 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=9.3
Q ss_pred EEEEEECHHHHHHHC---CCCHHHC
Q ss_conf 999995689998727---9804430
Q gi|254781145|r 71 GRKLYLTRSDLISMG---YDRESIN 92 (350)
Q Consensus 71 ~hr~~~t~~eL~~~G---y~~d~v~ 92 (350)
+.....+..++.+|| |++..|.
T Consensus 189 G~~~e~~~~~Im~MGGGmYeRe~V~ 213 (453)
T TIGR00601 189 GSEREETIEEIMEMGGGMYEREEVE 213 (453)
T ss_pred CCCHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 0007889999986278835088999
No 19
>cd05131 RasGAP_IQGAP2 IQGAP2 is a member of the IQGAP family that contains a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeat, a single WW domain, four IQ motifs which mediate interactions with calmodulin, and a Ras-GTPase-activating protein (GAP)-related domain that binds Rho family GTPases. IQGAP2 and IQGAP3 play important roles in the regulation of the cytoskeleton for axon outgrowth in hippocampal neurons and are thought to stay in a common regulatory pathway. The results of RNA interference studies indicated that IQGAP3 partially compensates functions of IQGAP2, but has lesser ability than IQGAP2 to promote axon outgrowth in hippocampal neuron. Morevover, IQGAP2 is required for the cadherin-mediated cell-to-cell adhesion in Xenopus laevis embryos.
Probab=29.80 E-value=34 Score=13.63 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=9.8
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 54310289999899884887876
Q gi|254781145|r 183 AASIIEIQKIKTVLLRQTLDNLY 205 (350)
Q Consensus 183 ~d~l~~lQ~~~n~~~R~~lDn~~ 205 (350)
...+..+....+..+..+.+++.
T Consensus 120 ~~~l~~Lr~i~~~fl~~I~~s~~ 142 (339)
T cd05131 120 ESSIQVLRSVTDKVLGSIMSSLD 142 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998577
No 20
>TIGR01472 gmd GDP-mannose 4,6-dehydratase; InterPro: IPR006368 This family represent GDP-mannose 4,6-dehydratase, also known as GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of Escherichia coli. Excluded from this family are members of the clade that are poorly related because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase .; GO: 0008446 GDP-mannose 46-dehydratase activity, 0019673 GDP-mannose metabolic process, 0005622 intracellular.
Probab=29.37 E-value=27 Score=14.22 Aligned_cols=10 Identities=50% Similarity=0.946 Sum_probs=7.3
Q ss_pred CE-EEEECCCC
Q ss_conf 82-68525789
Q gi|254781145|r 341 DQ-WVSFDPRY 350 (350)
Q Consensus 341 g~-~v~vdpr~ 350 (350)
|+ +|.|||||
T Consensus 312 Gk~~V~iD~rY 322 (365)
T TIGR01472 312 GKVVVEIDPRY 322 (365)
T ss_pred CCEEEEECCCC
T ss_conf 70799964865
No 21
>pfam04860 Phage_portal Phage portal protein. Bacteriophage portal proteins form a dodecamer and is located at a five-fold vertex of the viral capsid. The portal complex forms a channel through which the viral DNA is packaged into the capsid, and exits during infection. The portal protein is though to rotate during DNA packaging. Portal proteins from different phage show little sequence homology, so this family does not represent all portal proteins.
Probab=28.89 E-value=35 Score=13.52 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=77.2
Q ss_pred EEEEEEEECCCCEECCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC------CCCCCC------CCC
Q ss_conf 68985630687320354354310289999899884887876303662253134312100------001122------574
Q gi|254781145|r 165 FTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPE------SVLNPQ------FGK 232 (350)
Q Consensus 165 f~~~~~~p~p~~~~G~g~~d~l~~lQ~~~n~~~R~~lDn~~l~~~p~~~v~~~~~~~~~------d~~~~~------~g~ 232 (350)
..++........++|.|+.......-....+..+....-..-...|.+.+...+..+.+ +.++.. .|+
T Consensus 137 Vih~k~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~ng~~~~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~ 216 (348)
T pfam04860 137 VLHLKNGDSLDGIYGLSPLEAARESIGLALAAEEFARRFFKNGARPSGVLKYPGKLSEEQRERLREALEKQYKGAGNAGR 216 (348)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 79996788887765448899999999999999999999985488755699828979989999999999998558434687
Q ss_pred EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 14504666554444445688765679999999999988752466643035443355138999999999998899999999
Q gi|254781145|r 233 PIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTL 312 (350)
Q Consensus 233 ~v~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~e~~tGi~~~~~G~~~~~~~~~TAt~is~~~~~a~~r~~~~~R~~ 312 (350)
++....+.. +.++...+.-.......++..+.+-...||+....|....+ |.+.+ +...+.|
T Consensus 217 ~~vl~~g~~---~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~llg~~~~~----t~~n~-----------e~~~~~f 278 (348)
T pfam04860 217 PLVLEGGLD---YTPLSLSPADAQFLESRKFTREDIARAFGVPPHLLGILEKA----TYSNI-----------EQQNLAF 278 (348)
T ss_pred CEECCCCCC---EEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC----CCCCH-----------HHHHHHH
T ss_conf 210389975---35667882357899999999999999979799993886556----75779-----------9999999
Q ss_pred HH-HHHHHHHHHHHHH-HHHCCCHHEEEECCEEEEECC
Q ss_conf 99-9999999999999-874885105989682685257
Q gi|254781145|r 313 AQ-GLEILFRGLLRLI-IQHQDKVRMVRLRDQWVSFDP 348 (350)
Q Consensus 313 ae-~~k~l~~~i~~l~-~~~~~~~~~~ri~g~~v~vdp 348 (350)
.+ .+.|++..+-.-+ .+-.+.. -+..|.++.+|.
T Consensus 279 ~~~tl~P~~~~ie~el~~kLl~~~--~~~~~~~i~fd~ 314 (348)
T pfam04860 279 VTNTLLPLLKRIEQELNRKLLTPE--ERRAGYYFEFNV 314 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHH--HCCCCEEEEEEC
T ss_conf 996369999999999987535965--605874999925
No 22
>smart00676 DM10 Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases.
Probab=26.36 E-value=39 Score=13.23 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=6.3
Q ss_pred CCCCCEEEEEEECCC
Q ss_conf 288750464541246
Q gi|254781145|r 11 IKDSDVEVLEHSHRE 25 (350)
Q Consensus 11 ~~~~~ve~~~~~~~~ 25 (350)
|+|+-|+|.|...++
T Consensus 30 L~DdTi~I~E~~~~N 44 (104)
T smart00676 30 LEDDTIEVFEPDVRN 44 (104)
T ss_pred ECCCCEEEEECCCCC
T ss_conf 569969999727788
No 23
>PRK07318 dipeptidase PepV; Reviewed
Probab=24.43 E-value=42 Score=13.00 Aligned_cols=68 Identities=10% Similarity=0.104 Sum_probs=34.2
Q ss_pred EEEEEEECCCCCCCEEEEEEECCCCCEEEECCCCCCCCCEEEEEEEECCCCEECCCHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 789986058987410899990787530464046555685689856306873203543543102899998998848878
Q gi|254781145|r 126 LYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDN 203 (350)
Q Consensus 126 ~y~~~D~dgdg~~e~~~v~~~g~~~~~~il~~~~~~~~Pf~~~~~~p~p~~~~G~g~~d~l~~lQ~~~n~~~R~~lDn 203 (350)
+++++++ |+|... .-++-+.| .+..-+.|..-||.. ....++.||+|..|+=.++=.++=+ ++.+.|.
T Consensus 69 ~~g~~~~-G~g~~~-i~i~gH~D----VVP~gd~W~~dPF~~---~i~dG~lYGRGa~D~KG~~~a~l~A-lk~lkd~ 136 (469)
T PRK07318 69 YAGHIEY-GEGEEV-LGILGHLD----VVPAGDGWDTDPYEP---VIKDGKIYARGTSDDKGPTMAAYYA-LKIIKEL 136 (469)
T ss_pred EEEEEEE-CCCCCE-EEEECCCC----CCCCCCCCCCCCCCE---EEECCEEEEECCCCCCCCHHHHHHH-HHHHHHC
T ss_conf 6999983-699967-99973445----358999987799745---9989999960521266458999999-9999972
No 24
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=22.42 E-value=28 Score=14.19 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=15.5
Q ss_pred CHHHHHHHCCCCHHHCCCCCCCC
Q ss_conf 68999872798044302777876
Q gi|254781145|r 77 TRSDLISMGYDRESINNLPIISS 99 (350)
Q Consensus 77 t~~eL~~~Gy~~d~v~~~~~~~~ 99 (350)
+.++|.+|||.++.+.+.-....
T Consensus 4 ~i~~L~~MGF~~~~~~~AL~~~~ 26 (37)
T smart00165 4 KIDQLLEMGFSREEALKALRAAN 26 (37)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 89999985999999999999815
No 25
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=22.17 E-value=28 Score=14.19 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=16.1
Q ss_pred CHHHHHHHCCCCHHHCCCCCCCCCC
Q ss_conf 6899987279804430277787641
Q gi|254781145|r 77 TRSDLISMGYDRESINNLPIISSQN 101 (350)
Q Consensus 77 t~~eL~~~Gy~~d~v~~~~~~~~~~ 101 (350)
..++|.+|||.++.+...-..+..+
T Consensus 4 ~v~~L~~MGF~~~~~~~AL~~~~~n 28 (38)
T cd00194 4 KLEQLLEMGFSREEARKALRATNNN 28 (38)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHCCC
T ss_conf 8999998599999999999985899
No 26
>pfam11372 DUF3173 Protein of unknown function (DUF3173). This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.86 E-value=46 Score=12.69 Aligned_cols=15 Identities=33% Similarity=0.722 Sum_probs=11.6
Q ss_pred EECHHHHHHHCCCCH
Q ss_conf 956899987279804
Q gi|254781145|r 75 YLTRSDLISMGYDRE 89 (350)
Q Consensus 75 ~~t~~eL~~~Gy~~d 89 (350)
.+|+.||+++||.+.
T Consensus 3 tvt~~dLi~lGf~~~ 17 (59)
T pfam11372 3 TVTKKDLIKLGFKPH 17 (59)
T ss_pred CCCHHHHHHHCCCHH
T ss_conf 567999999579887
Done!