HHsearch alignment for GI: 254781145 and conserved domain: pfam12236
>pfam12236 Head-tail_con Bacteriophage head to tail connecting protein. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 516 and 555 amino acids in length. The head-tail connector, a dodecamer of gp10, is embedded within a unique five-fold vertex of the head. The connector serves as the site of assembly of the transient DNA packaging motor that translocates the dsDNA genome into a precursor head shell, or prohead.
Probab=99.78 E-value=9.5e-16 Score=123.82 Aligned_cols=280 Identities=13% Similarity=0.101 Sum_probs=196.9
Q ss_pred ECCEEEEEEECHHHEEECCCCCCHHHCCEEEEEEEECHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCE
Q ss_conf 46836898576587434679988646548999999568999872798044302777876410133202456545567514
Q gi|254781145|r 41 SQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALEM 120 (350)
Q Consensus 41 ~~~~v~ie~V~pedf~vdp~A~~l~da~~v~hr~~~t~~eL~~~Gy~~d~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 120 (350)
T Consensus 132 ~~~~~~f~~~pl~~~~v~~d~~G-~~vd~v~R~~~~t~~q~~~~f~~-~~l~~-------~v--~~~~~~---~~~p~~~ 197 (480)
T pfam12236 132 RKGVIRFEAVPLGSYVVARDANG-NVVDIVFRRFSLTVRQIVQRFGL-DALSE-------EI--RKALED---GEKPEDK 197 (480)
T ss_pred CCCCCEEEEEECCEEEEEECCCC-CEEEEEEEEEECCHHHHHHHCCH-HHCCH-------HH--HHHHHC---CCCCCCE
T ss_conf 67762379963153999967999-97899999763249999986171-21897-------78--888752---7897865
Q ss_pred EEEEEEEEEEEECCCCCCCEEEEEEECCCCCEEEECCCCCCCCCEEEEEEEECCCCEECCCHHHHHCCHHHHHHHHHHHH
Q ss_conf 99999789986058987410899990787530464046555685689856306873203543543102899998998848
Q gi|254781145|r 121 IEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQT 200 (350)
Q Consensus 121 v~v~E~y~~~D~dgdg~~e~~~v~~~g~~~~~~il~~~~~~~~Pf~~~~~~p~p~~~~G~g~~d~l~~lQ~~~n~~~R~~ 200 (350)
T Consensus 198 ~~v~~~V~~~~-d-~~~~~~~~s~~~~~~~~~~~l~e~g~~~~P~~~~Rw~~~~ge~YGrgp~~~~l~d~k~l~~l~~~~ 275 (480)
T pfam12236 198 VEIYHAVEPRA-D-DAKNMPFASYQEDAGKDVGVLSESGYDEFPYLVPRWEKIDGEAYGRSPVEDALPDVKSLNKLSEAL 275 (480)
T ss_pred EEEEEEEEECC-C-CCCCCCEEEEEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999846-7-778996699999768853034414788786666778737998657086999868999999999999
Q ss_pred HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87876303662253134312100001122574145046665544444456887656799999999999887524666430
Q gi|254781145|r 201 LDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSG 280 (350)
Q Consensus 201 lDn~~l~~~p~~~v~~~~~~~~~d~~~~~~g~~v~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~e~~tGi~~~~~G 280 (350)
T Consensus 276 ~~~~~~a~~p~~~v~~~~~~~~~~l-~~~~~~~i~~g~~-~~~~~~p~~~~~~~~~~~~~i~~~~~~I~~af~~d~~~~- 352 (480)
T pfam12236 276 LKAAAKASKPPWLVPPSGVTQPRDL-VPGGTGYVVTGVA-GDIGIKPLEKYADFQVAQAVIQDIRQRIREAFMVDLFQM- 352 (480)
T ss_pred HHHHHHHHCCCEEECCCCCCCCCEE-CCCCCCEEEECCC-CCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_conf 9999874268578576545474140-3578844742687-776500055678744999999999999999998753147-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCE
Q ss_conf 3544335513899999999999889-9999999999999999999999874885105989682
Q gi|254781145|r 281 FSPEILQNMTATATSLIEQSGVGQV-ELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQ 342 (350)
Q Consensus 281 ~~~~~~~~~TAt~is~~~~~a~~r~-~~~~R~~ae~~k~l~~~i~~l~~~~~~~~~~~ri~g~ 342 (350)
T Consensus 353 --~~~-~~~TAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~g~lp~~p~~~g~ 412 (480)
T pfam12236 353 --RDA-ERVTATEVRERAEEKEQLLGPVYSRLQEEFLSPLIERTFNILQRAGMLPPPPDELGV 412 (480)
T ss_pred --CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC
T ss_conf --788-877799999999999987607889999999999999999999977999999246088