HHsearch alignment for GI: 254781145 and conserved domain: pfam12236

>pfam12236 Head-tail_con Bacteriophage head to tail connecting protein. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 516 and 555 amino acids in length. The head-tail connector, a dodecamer of gp10, is embedded within a unique five-fold vertex of the head. The connector serves as the site of assembly of the transient DNA packaging motor that translocates the dsDNA genome into a precursor head shell, or prohead.
Probab=99.78  E-value=9.5e-16  Score=123.82  Aligned_cols=280  Identities=13%  Similarity=0.101  Sum_probs=196.9

Q ss_pred             ECCEEEEEEECHHHEEECCCCCCHHHCCEEEEEEEECHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCE
Q ss_conf             46836898576587434679988646548999999568999872798044302777876410133202456545567514
Q gi|254781145|r   41 SQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALEM  120 (350)
Q Consensus        41 ~~~~v~ie~V~pedf~vdp~A~~l~da~~v~hr~~~t~~eL~~~Gy~~d~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  120 (350)
T Consensus       132 ~~~~~~f~~~pl~~~~v~~d~~G-~~vd~v~R~~~~t~~q~~~~f~~-~~l~~-------~v--~~~~~~---~~~p~~~  197 (480)
T pfam12236       132 RKGVIRFEAVPLGSYVVARDANG-NVVDIVFRRFSLTVRQIVQRFGL-DALSE-------EI--RKALED---GEKPEDK  197 (480)
T ss_pred             CCCCCEEEEEECCEEEEEECCCC-CEEEEEEEEEECCHHHHHHHCCH-HHCCH-------HH--HHHHHC---CCCCCCE
T ss_conf             67762379963153999967999-97899999763249999986171-21897-------78--888752---7897865


Q ss_pred             EEEEEEEEEEEECCCCCCCEEEEEEECCCCCEEEECCCCCCCCCEEEEEEEECCCCEECCCHHHHHCCHHHHHHHHHHHH
Q ss_conf             99999789986058987410899990787530464046555685689856306873203543543102899998998848
Q gi|254781145|r  121 IEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQT  200 (350)
Q Consensus       121 v~v~E~y~~~D~dgdg~~e~~~v~~~g~~~~~~il~~~~~~~~Pf~~~~~~p~p~~~~G~g~~d~l~~lQ~~~n~~~R~~  200 (350)
T Consensus       198 ~~v~~~V~~~~-d-~~~~~~~~s~~~~~~~~~~~l~e~g~~~~P~~~~Rw~~~~ge~YGrgp~~~~l~d~k~l~~l~~~~  275 (480)
T pfam12236       198 VEIYHAVEPRA-D-DAKNMPFASYQEDAGKDVGVLSESGYDEFPYLVPRWEKIDGEAYGRSPVEDALPDVKSLNKLSEAL  275 (480)
T ss_pred             EEEEEEEEECC-C-CCCCCCEEEEEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999846-7-778996699999768853034414788786666778737998657086999868999999999999


Q ss_pred             HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             87876303662253134312100001122574145046665544444456887656799999999999887524666430
Q gi|254781145|r  201 LDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSG  280 (350)
Q Consensus       201 lDn~~l~~~p~~~v~~~~~~~~~d~~~~~~g~~v~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~e~~tGi~~~~~G  280 (350)
T Consensus       276 ~~~~~~a~~p~~~v~~~~~~~~~~l-~~~~~~~i~~g~~-~~~~~~p~~~~~~~~~~~~~i~~~~~~I~~af~~d~~~~-  352 (480)
T pfam12236       276 LKAAAKASKPPWLVPPSGVTQPRDL-VPGGTGYVVTGVA-GDIGIKPLEKYADFQVAQAVIQDIRQRIREAFMVDLFQM-  352 (480)
T ss_pred             HHHHHHHHCCCEEECCCCCCCCCEE-CCCCCCEEEECCC-CCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_conf             9999874268578576545474140-3578844742687-776500055678744999999999999999998753147-


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCE
Q ss_conf             3544335513899999999999889-9999999999999999999999874885105989682
Q gi|254781145|r  281 FSPEILQNMTATATSLIEQSGVGQV-ELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQ  342 (350)
Q Consensus       281 ~~~~~~~~~TAt~is~~~~~a~~r~-~~~~R~~ae~~k~l~~~i~~l~~~~~~~~~~~ri~g~  342 (350)
T Consensus       353 --~~~-~~~TAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~g~lp~~p~~~g~  412 (480)
T pfam12236       353 --RDA-ERVTATEVRERAEEKEQLLGPVYSRLQEEFLSPLIERTFNILQRAGMLPPPPDELGV  412 (480)
T ss_pred             --CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC
T ss_conf             --788-877799999999999987607889999999999999999999977999999246088