Query         gi|254781145|ref|YP_003065558.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 350
No_of_seqs    150 out of 629
Neff          8.4 
Searched_HMMs 13730
Date          Wed Jun  1 11:36:35 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781145.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1oqya1 a.5.2.1 (A:160-200) DN  27.0     6.9  0.0005   15.2   0.2   24   78-101     8-31  (41)
  2 d1vg5a_ a.5.2.1 (A:) Rhomboid   21.3      15  0.0011   12.8   1.1   16   78-93     33-48  (73)
  3 d1wgna_ a.5.2.1 (A:) Ubiquitin  21.0      14   0.001   13.1   0.9   14   79-92     24-37  (63)
  4 d1wiva_ a.5.2.1 (A:) Ubiquitin  19.9      18  0.0013   12.4   1.3   17   78-94     33-49  (73)
  5 d1wjia_ a.5.2.1 (A:) Tudor dom  19.2     9.1 0.00066   14.4  -0.4   21   78-98     13-33  (63)
  6 d2g3qa1 a.5.2.1 (A:1339-1381)   18.3      19  0.0014   12.2   1.1   18   77-94      7-24  (43)
  7 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i  16.9      21  0.0015   12.0   1.3   17   78-94     16-32  (51)
  8 d1whca_ a.5.2.1 (A:) UBA/UBX 3  12.8      27   0.002   11.2   1.1   18   77-94     12-29  (64)
  9 d1soxa2 d.120.1.1 (A:3-93) Sul  12.5      27   0.002   11.2   1.3   35  210-244    19-55  (91)
 10 d1wyua1 c.67.1.7 (A:1-437) Gly  11.7      29  0.0021   11.0   3.5   10  169-179   200-209 (437)

No 1  
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.01  E-value=6.9  Score=15.19  Aligned_cols=24  Identities=33%  Similarity=0.524  Sum_probs=16.0

Q ss_pred             HHHHHHHCCCCHHHCCCCCCCCCC
Q ss_conf             899987279804430277787641
Q gi|254781145|r   78 RSDLISMGYDRESINNLPIISSQN  101 (350)
Q Consensus        78 ~~eL~~~Gy~~d~v~~~~~~~~~~  101 (350)
                      ..+|.+|||+++.+...-.....+
T Consensus         8 i~~L~~MGF~~~~a~~AL~~~~~N   31 (41)
T d1oqya1           8 LTEIMSMGYERERVVAALRASYNN   31 (41)
T ss_dssp             HHHHHTTTCCSHHHHHHHHHSCSS
T ss_pred             HHHHHHCCCCHHHHHHHHHHHCCC
T ss_conf             999998599899999999985899


No 2  
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=21.34  E-value=15  Score=12.84  Aligned_cols=16  Identities=31%  Similarity=0.704  Sum_probs=7.1

Q ss_pred             HHHHHHHCCCCHHHCC
Q ss_conf             8999872798044302
Q gi|254781145|r   78 RSDLISMGYDRESINN   93 (350)
Q Consensus        78 ~~eL~~~Gy~~d~v~~   93 (350)
                      ..+|.+|||+++....
T Consensus        33 i~~L~~MGF~~~~a~~   48 (73)
T d1vg5a_          33 IQKLVAMGFDRTQVEV   48 (73)
T ss_dssp             HHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHCCCHHHHHH
T ss_conf             9999995899999999


No 3  
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.04  E-value=14  Score=13.07  Aligned_cols=14  Identities=29%  Similarity=0.648  Sum_probs=6.0

Q ss_pred             HHHHHHCCCCHHHC
Q ss_conf             99987279804430
Q gi|254781145|r   79 SDLISMGYDRESIN   92 (350)
Q Consensus        79 ~eL~~~Gy~~d~v~   92 (350)
                      .+|.+|||+++.+.
T Consensus        24 ~~L~~MGF~~~~a~   37 (63)
T d1wgna_          24 ETVVNMGYSYECVL   37 (63)
T ss_dssp             HHHHHHHCCHHHHH
T ss_pred             HHHHHCCCCHHHHH
T ss_conf             99998699899999


No 4  
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=19.92  E-value=18  Score=12.41  Aligned_cols=17  Identities=18%  Similarity=0.427  Sum_probs=8.2

Q ss_pred             HHHHHHHCCCCHHHCCC
Q ss_conf             89998727980443027
Q gi|254781145|r   78 RSDLISMGYDRESINNL   94 (350)
Q Consensus        78 ~~eL~~~Gy~~d~v~~~   94 (350)
                      ..+|.+|||.++.+.+.
T Consensus        33 i~~L~~MGF~~~~a~~A   49 (73)
T d1wiva_          33 VDTLLSFGFAEDVARKA   49 (73)
T ss_dssp             HHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHH
T ss_conf             99999369999999999


No 5  
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.24  E-value=9.1  Score=14.36  Aligned_cols=21  Identities=14%  Similarity=0.317  Sum_probs=13.6

Q ss_pred             HHHHHHHCCCCHHHCCCCCCC
Q ss_conf             899987279804430277787
Q gi|254781145|r   78 RSDLISMGYDRESINNLPIIS   98 (350)
Q Consensus        78 ~~eL~~~Gy~~d~v~~~~~~~   98 (350)
                      ..+|.+|||.+......-...
T Consensus        13 v~~L~~MGF~~~~a~~AL~~~   33 (63)
T d1wjia_          13 LKHITEMGFSKEASRQALMDN   33 (63)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHT
T ss_pred             HHHHHHCCCCHHHHHHHHHHH
T ss_conf             999999699999999999991


No 6  
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=18.34  E-value=19  Score=12.21  Aligned_cols=18  Identities=28%  Similarity=0.506  Sum_probs=12.7

Q ss_pred             CHHHHHHHCCCCHHHCCC
Q ss_conf             689998727980443027
Q gi|254781145|r   77 TRSDLISMGYDRESINNL   94 (350)
Q Consensus        77 t~~eL~~~Gy~~d~v~~~   94 (350)
                      ..++|..|||+++...+.
T Consensus         7 ai~eL~~MGF~e~~A~~A   24 (43)
T d2g3qa1           7 AVEELSGMGFTEEEAHNA   24 (43)
T ss_dssp             HHHHHHTTTSCHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHH
T ss_conf             999999558788999999


No 7  
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.95  E-value=21  Score=11.97  Aligned_cols=17  Identities=29%  Similarity=0.466  Sum_probs=10.4

Q ss_pred             HHHHHHHCCCCHHHCCC
Q ss_conf             89998727980443027
Q gi|254781145|r   78 RSDLISMGYDRESINNL   94 (350)
Q Consensus        78 ~~eL~~~Gy~~d~v~~~   94 (350)
                      ..+|.+|||.+....+.
T Consensus        16 l~~L~~MGF~~~~a~~A   32 (51)
T d2cpwa1          16 LDVLLSMGFPRARAQKA   32 (51)
T ss_dssp             HHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHH
T ss_conf             99999959999999999


No 8  
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.79  E-value=27  Score=11.24  Aligned_cols=18  Identities=28%  Similarity=0.482  Sum_probs=10.3

Q ss_pred             CHHHHHHHCCCCHHHCCC
Q ss_conf             689998727980443027
Q gi|254781145|r   77 TRSDLISMGYDRESINNL   94 (350)
Q Consensus        77 t~~eL~~~Gy~~d~v~~~   94 (350)
                      ...+|.+|||.++..++.
T Consensus        12 ~l~~L~~MGF~~~~a~~A   29 (64)
T d1whca_          12 ALESLIEMGFPRGRAEKA   29 (64)
T ss_dssp             HHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHH
T ss_conf             999999959999999999


No 9  
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=12.47  E-value=27  Score=11.18  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=23.3

Q ss_pred             CCEEEECCCCCCCCCCCCCCCCC--EEEECCCCCCCC
Q ss_conf             62253134312100001122574--145046665544
Q gi|254781145|r  210 PQTIVQEGSIIDPESVLNPQFGK--PIRVAAGMDIRS  244 (350)
Q Consensus       210 p~~~v~~~~~~~~~d~~~~~~g~--~v~~~~~~~~~~  244 (350)
                      ..|.+.+|.+-+..+.+...|||  ++....|.....
T Consensus        19 ~~Wiii~g~VYDvT~f~~~HPGG~~~i~~~~G~D~t~   55 (91)
T d1soxa2          19 RVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEP   55 (91)
T ss_dssp             EEEEEETTEEEECTTTTTTSTTCHHHHGGGTTSBSHH
T ss_pred             CEEEEECCEEEECCCEECCCCCCHHHHHHHCCCCCCH
T ss_conf             6599999999822013204677179999874875667


No 10 
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}
Probab=11.72  E-value=29  Score=11.03  Aligned_cols=10  Identities=30%  Similarity=0.870  Sum_probs=4.8

Q ss_pred             EEEECCCCEEC
Q ss_conf             56306873203
Q gi|254781145|r  169 RAMRAPHCFIG  179 (350)
Q Consensus       169 ~~~p~p~~~~G  179 (350)
                      ..+..|. ++|
T Consensus       200 vmi~~Pn-t~G  209 (437)
T d1wyua1         200 VVVQNPN-FLG  209 (437)
T ss_dssp             EEEESSC-TTS
T ss_pred             EEECCCC-CCC
T ss_conf             9973544-544


Done!