Query gi|254781145|ref|YP_003065558.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 350 No_of_seqs 150 out of 629 Neff 8.4 Searched_HMMs 13730 Date Wed Jun 1 11:36:35 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781145.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1oqya1 a.5.2.1 (A:160-200) DN 27.0 6.9 0.0005 15.2 0.2 24 78-101 8-31 (41) 2 d1vg5a_ a.5.2.1 (A:) Rhomboid 21.3 15 0.0011 12.8 1.1 16 78-93 33-48 (73) 3 d1wgna_ a.5.2.1 (A:) Ubiquitin 21.0 14 0.001 13.1 0.9 14 79-92 24-37 (63) 4 d1wiva_ a.5.2.1 (A:) Ubiquitin 19.9 18 0.0013 12.4 1.3 17 78-94 33-49 (73) 5 d1wjia_ a.5.2.1 (A:) Tudor dom 19.2 9.1 0.00066 14.4 -0.4 21 78-98 13-33 (63) 6 d2g3qa1 a.5.2.1 (A:1339-1381) 18.3 19 0.0014 12.2 1.1 18 77-94 7-24 (43) 7 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 16.9 21 0.0015 12.0 1.3 17 78-94 16-32 (51) 8 d1whca_ a.5.2.1 (A:) UBA/UBX 3 12.8 27 0.002 11.2 1.1 18 77-94 12-29 (64) 9 d1soxa2 d.120.1.1 (A:3-93) Sul 12.5 27 0.002 11.2 1.3 35 210-244 19-55 (91) 10 d1wyua1 c.67.1.7 (A:1-437) Gly 11.7 29 0.0021 11.0 3.5 10 169-179 200-209 (437) No 1 >d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Probab=27.01 E-value=6.9 Score=15.19 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=16.0 Q ss_pred HHHHHHHCCCCHHHCCCCCCCCCC Q ss_conf 899987279804430277787641 Q gi|254781145|r 78 RSDLISMGYDRESINNLPIISSQN 101 (350) Q Consensus 78 ~~eL~~~Gy~~d~v~~~~~~~~~~ 101 (350) ..+|.+|||+++.+...-.....+ T Consensus 8 i~~L~~MGF~~~~a~~AL~~~~~N 31 (41) T d1oqya1 8 LTEIMSMGYERERVVAALRASYNN 31 (41) T ss_dssp HHHHHTTTCCSHHHHHHHHHSCSS T ss_pred HHHHHHCCCCHHHHHHHHHHHCCC T ss_conf 999998599899999999985899 No 2 >d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=21.34 E-value=15 Score=12.84 Aligned_cols=16 Identities=31% Similarity=0.704 Sum_probs=7.1 Q ss_pred HHHHHHHCCCCHHHCC Q ss_conf 8999872798044302 Q gi|254781145|r 78 RSDLISMGYDRESINN 93 (350) Q Consensus 78 ~~eL~~~Gy~~d~v~~ 93 (350) ..+|.+|||+++.... T Consensus 33 i~~L~~MGF~~~~a~~ 48 (73) T d1vg5a_ 33 IQKLVAMGFDRTQVEV 48 (73) T ss_dssp HHHHHTTTCCHHHHHH T ss_pred HHHHHHHCCCHHHHHH T ss_conf 9999995899999999 No 3 >d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Probab=21.04 E-value=14 Score=13.07 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=6.0 Q ss_pred HHHHHHCCCCHHHC Q ss_conf 99987279804430 Q gi|254781145|r 79 SDLISMGYDRESIN 92 (350) Q Consensus 79 ~eL~~~Gy~~d~v~ 92 (350) .+|.+|||+++.+. T Consensus 24 ~~L~~MGF~~~~a~ 37 (63) T d1wgna_ 24 ETVVNMGYSYECVL 37 (63) T ss_dssp HHHHHHHCCHHHHH T ss_pred HHHHHCCCCHHHHH T ss_conf 99998699899999 No 4 >d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=19.92 E-value=18 Score=12.41 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=8.2 Q ss_pred HHHHHHHCCCCHHHCCC Q ss_conf 89998727980443027 Q gi|254781145|r 78 RSDLISMGYDRESINNL 94 (350) Q Consensus 78 ~~eL~~~Gy~~d~v~~~ 94 (350) ..+|.+|||.++.+.+. T Consensus 33 i~~L~~MGF~~~~a~~A 49 (73) T d1wiva_ 33 VDTLLSFGFAEDVARKA 49 (73) T ss_dssp HHHHHHHTCCHHHHHHH T ss_pred HHHHHHCCCCHHHHHHH T ss_conf 99999369999999999 No 5 >d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Probab=19.24 E-value=9.1 Score=14.36 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=13.6 Q ss_pred HHHHHHHCCCCHHHCCCCCCC Q ss_conf 899987279804430277787 Q gi|254781145|r 78 RSDLISMGYDRESINNLPIIS 98 (350) Q Consensus 78 ~~eL~~~Gy~~d~v~~~~~~~ 98 (350) ..+|.+|||.+......-... T Consensus 13 v~~L~~MGF~~~~a~~AL~~~ 33 (63) T d1wjia_ 13 LKHITEMGFSKEASRQALMDN 33 (63) T ss_dssp HHHHHTTTCCHHHHHHHHHHT T ss_pred HHHHHHCCCCHHHHHHHHHHH T ss_conf 999999699999999999991 No 6 >d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} Probab=18.34 E-value=19 Score=12.21 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=12.7 Q ss_pred CHHHHHHHCCCCHHHCCC Q ss_conf 689998727980443027 Q gi|254781145|r 77 TRSDLISMGYDRESINNL 94 (350) Q Consensus 77 t~~eL~~~Gy~~d~v~~~ 94 (350) ..++|..|||+++...+. T Consensus 7 ai~eL~~MGF~e~~A~~A 24 (43) T d2g3qa1 7 AVEELSGMGFTEEEAHNA 24 (43) T ss_dssp HHHHHHTTTSCHHHHHHH T ss_pred HHHHHHHCCCCHHHHHHH T ss_conf 999999558788999999 No 7 >d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} Probab=16.95 E-value=21 Score=11.97 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=10.4 Q ss_pred HHHHHHHCCCCHHHCCC Q ss_conf 89998727980443027 Q gi|254781145|r 78 RSDLISMGYDRESINNL 94 (350) Q Consensus 78 ~~eL~~~Gy~~d~v~~~ 94 (350) ..+|.+|||.+....+. T Consensus 16 l~~L~~MGF~~~~a~~A 32 (51) T d2cpwa1 16 LDVLLSMGFPRARAQKA 32 (51) T ss_dssp HHHHHHHTCCHHHHHHH T ss_pred HHHHHHCCCCHHHHHHH T ss_conf 99999959999999999 No 8 >d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} Probab=12.79 E-value=27 Score=11.24 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=10.3 Q ss_pred CHHHHHHHCCCCHHHCCC Q ss_conf 689998727980443027 Q gi|254781145|r 77 TRSDLISMGYDRESINNL 94 (350) Q Consensus 77 t~~eL~~~Gy~~d~v~~~ 94 (350) ...+|.+|||.++..++. T Consensus 12 ~l~~L~~MGF~~~~a~~A 29 (64) T d1whca_ 12 ALESLIEMGFPRGRAEKA 29 (64) T ss_dssp HHHHHHTTTCCHHHHHHH T ss_pred HHHHHHHCCCCHHHHHHH T ss_conf 999999959999999999 No 9 >d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Probab=12.47 E-value=27 Score=11.18 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=23.3 Q ss_pred CCEEEECCCCCCCCCCCCCCCCC--EEEECCCCCCCC Q ss_conf 62253134312100001122574--145046665544 Q gi|254781145|r 210 PQTIVQEGSIIDPESVLNPQFGK--PIRVAAGMDIRS 244 (350) Q Consensus 210 p~~~v~~~~~~~~~d~~~~~~g~--~v~~~~~~~~~~ 244 (350) ..|.+.+|.+-+..+.+...||| ++....|..... T Consensus 19 ~~Wiii~g~VYDvT~f~~~HPGG~~~i~~~~G~D~t~ 55 (91) T d1soxa2 19 RVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEP 55 (91) T ss_dssp EEEEEETTEEEECTTTTTTSTTCHHHHGGGTTSBSHH T ss_pred CEEEEECCEEEECCCEECCCCCCHHHHHHHCCCCCCH T ss_conf 6599999999822013204677179999874875667 No 10 >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} Probab=11.72 E-value=29 Score=11.03 Aligned_cols=10 Identities=30% Similarity=0.870 Sum_probs=4.8 Q ss_pred EEEECCCCEEC Q ss_conf 56306873203 Q gi|254781145|r 169 RAMRAPHCFIG 179 (350) Q Consensus 169 ~~~p~p~~~~G 179 (350) ..+..|. ++| T Consensus 200 vmi~~Pn-t~G 209 (437) T d1wyua1 200 VVVQNPN-FLG 209 (437) T ss_dssp EEEESSC-TTS T ss_pred EEECCCC-CCC T ss_conf 9973544-544 Done!