RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781145|ref|YP_003065558.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter asiaticus str. psy62] (350 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 38.4 bits (89), Expect = 0.002 Identities = 48/370 (12%), Positives = 88/370 (23%), Gaps = 160/370 (43%) Query: 96 IISSQNIENTWKFPKNQYS------DK-ALEMIEYYELYVTIDYDGDGIAEL-------- 140 +S ++E+ P + ++ + E E + D + AEL Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGF-AADDEPTTPAELVGKFLGYV 68 Query: 141 -RRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTV---- 195 V + D +L N E L H + L + + K K + Sbjct: 69 SSLVEPSKVGQFDQVL-NLCLTEFENCYLEG-NDIHALAAKLLQENDTTLVKTKELIKNY 126 Query: 196 ------------------LLRQTLDN---LY----WQNQPQTIVQE------------GS 218 L R + L Q +E G Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186 Query: 219 II------------DPESVLNPQFGKPIRVAAGMDIRSVLGIH------------SVPMI 254 +I F + G++I L S+P+ Sbjct: 187 LIKFSAETLSELIRTTLDA-EKVFTQ------GLNILEWL--ENPSNTPDKDYLLSIPI- 236 Query: 255 EKSF------SMLHYLDQELVDRTGISDISSGFSP-EILQNM-----------TATAT-- 294 S + HY+ ++ GF+P E+ + TA A Sbjct: 237 --SCPLIGVIQLAHYV---------VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285 Query: 295 -----SLIEQSGVGQVELIVRTLAQGLEILF----RGLL---RLIIQ---HQDKVR---- 335 S + + +LF R + +D + Sbjct: 286 TDSWESFFVSV------------RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333 Query: 336 ----MVRLRD 341 M+ + + Sbjct: 334 VPSPMLSISN 343 Score = 36.1 bits (83), Expect = 0.011 Identities = 44/323 (13%), Positives = 80/323 (24%), Gaps = 159/323 (49%) Query: 18 VLEHSHREDGGE-------KVHDLRIRR--KYSQGKVCVDAV----------------SP 52 +LE S + E + +L + Y V+ Sbjct: 323 ILEDS--LENNEGVPSPMLSISNLTQEQVQDY------VNKTNSHLPAGKQVEISLVNGA 374 Query: 53 DEFLI--HPDS----------------VDIEKSPIVGRKLYLTRSDLISMGYDRESINNL 94 ++ P S +D + P RKL S + L Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK------FSNRF-------L 421 Query: 95 PIISSQNIENTWKFP-KNQYSDKALEMIEYYELYVTIDYDGDGIA----ELRRVIMAGGT 149 P+ S P + A ++I + D + ++ +++ + Sbjct: 422 PVAS----------PFHSHLLVPASDLIN--K-----DLVKNNVSFNAKDIQIPVYDTFD 464 Query: 150 GKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIE-IQKIKTVLLRQTLDNLYWQN 208 G D LR + S++ I++ I + W Sbjct: 465 GSD---------------LRVL-------SGSISERIVDCI----------IRLPVKW-- 490 Query: 209 QPQTIVQEGS-IIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQE 267 T + + I+D FG P G S LG + H Sbjct: 491 -ETTTQFKATHILD--------FG-P----GGA---SGLG-----------VLTH----R 518 Query: 268 LVDRTGI-----SDISSGFSPEI 285 D TG+ + + Sbjct: 519 NKDGTGVRVIVAGTLDINPDDDY 541 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 30.9 bits (69), Expect = 0.44 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 9/73 (12%) Query: 236 VAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTG----ISDISSG--FSPEILQNM 289 +A G++ +G+ + E +F++L L E+V+ ++D++ G F PE+ + Sbjct: 685 IAEGIE---KMGVRTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGLQFVPELKEFT 741 Query: 290 TATATSLIEQSGV 302 L+E S V Sbjct: 742 AKLRKELVETSEV 754 >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Length = 400 Score = 27.8 bits (61), Expect = 4.2 Identities = 22/129 (17%), Positives = 37/129 (28%), Gaps = 7/129 (5%) Query: 193 KTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVP 252 K+ L + ID E P I G+D L + Sbjct: 191 KSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYA 250 Query: 253 MIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTL 312 + L LD + + S ++ + A + SG G++ L Sbjct: 251 RAYNADHQLRLLDA-------AAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHL 303 Query: 313 AQGLEILFR 321 A+ + L R Sbjct: 304 AKFMRALQR 312 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.138 0.402 Gapped Lambda K H 0.267 0.0609 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,141,788 Number of extensions: 150799 Number of successful extensions: 435 Number of sequences better than 10.0: 1 Number of HSP's gapped: 434 Number of HSP's successfully gapped: 14 Length of query: 350 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 257 Effective length of database: 3,438,538 Effective search space: 883704266 Effective search space used: 883704266 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.0 bits)