RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781145|ref|YP_003065558.1| hypothetical protein
CLIBASIA_05245 [Candidatus Liberibacter asiaticus str. psy62]
         (350 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 48/370 (12%), Positives = 88/370 (23%), Gaps = 160/370 (43%)

Query: 96  IISSQNIENTWKFPKNQYS------DK-ALEMIEYYELYVTIDYDGDGIAEL-------- 140
            +S  ++E+    P   +       ++    + E  E +   D +    AEL        
Sbjct: 10  TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGF-AADDEPTTPAELVGKFLGYV 68

Query: 141 -RRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTV---- 195
              V  +     D +L N    E     L      H    + L  +   + K K +    
Sbjct: 69  SSLVEPSKVGQFDQVL-NLCLTEFENCYLEG-NDIHALAAKLLQENDTTLVKTKELIKNY 126

Query: 196 ------------------LLRQTLDN---LY----WQNQPQTIVQE------------GS 218
                             L R   +    L      Q       +E            G 
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186

Query: 219 II------------DPESVLNPQFGKPIRVAAGMDIRSVLGIH------------SVPMI 254
           +I                     F +      G++I   L               S+P+ 
Sbjct: 187 LIKFSAETLSELIRTTLDA-EKVFTQ------GLNILEWL--ENPSNTPDKDYLLSIPI- 236

Query: 255 EKSF------SMLHYLDQELVDRTGISDISSGFSP-EILQNM-----------TATAT-- 294
             S        + HY+         ++    GF+P E+   +           TA A   
Sbjct: 237 --SCPLIGVIQLAHYV---------VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285

Query: 295 -----SLIEQSGVGQVELIVRTLAQGLEILF----RGLL---RLIIQ---HQDKVR---- 335
                S                  + + +LF    R         +     +D +     
Sbjct: 286 TDSWESFFVSV------------RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333

Query: 336 ----MVRLRD 341
               M+ + +
Sbjct: 334 VPSPMLSISN 343



 Score = 36.1 bits (83), Expect = 0.011
 Identities = 44/323 (13%), Positives = 80/323 (24%), Gaps = 159/323 (49%)

Query: 18  VLEHSHREDGGE-------KVHDLRIRR--KYSQGKVCVDAV----------------SP 52
           +LE S   +  E        + +L   +   Y      V+                    
Sbjct: 323 ILEDS--LENNEGVPSPMLSISNLTQEQVQDY------VNKTNSHLPAGKQVEISLVNGA 374

Query: 53  DEFLI--HPDS----------------VDIEKSPIVGRKLYLTRSDLISMGYDRESINNL 94
              ++   P S                +D  + P   RKL        S  +       L
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK------FSNRF-------L 421

Query: 95  PIISSQNIENTWKFP-KNQYSDKALEMIEYYELYVTIDYDGDGIA----ELRRVIMAGGT 149
           P+ S          P  +     A ++I   +     D   + ++    +++  +     
Sbjct: 422 PVAS----------PFHSHLLVPASDLIN--K-----DLVKNNVSFNAKDIQIPVYDTFD 464

Query: 150 GKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIE-IQKIKTVLLRQTLDNLYWQN 208
           G D               LR +         S++  I++ I              + W  
Sbjct: 465 GSD---------------LRVL-------SGSISERIVDCI----------IRLPVKW-- 490

Query: 209 QPQTIVQEGS-IIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQE 267
              T   + + I+D        FG P     G    S LG            + H     
Sbjct: 491 -ETTTQFKATHILD--------FG-P----GGA---SGLG-----------VLTH----R 518

Query: 268 LVDRTGI-----SDISSGFSPEI 285
             D TG+       +      + 
Sbjct: 519 NKDGTGVRVIVAGTLDINPDDDY 541


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 30.9 bits (69), Expect = 0.44
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 9/73 (12%)

Query: 236 VAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTG----ISDISSG--FSPEILQNM 289
           +A G++    +G+ +    E +F++L  L  E+V+       ++D++ G  F PE+ +  
Sbjct: 685 IAEGIE---KMGVRTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGLQFVPELKEFT 741

Query: 290 TATATSLIEQSGV 302
                 L+E S V
Sbjct: 742 AKLRKELVETSEV 754


>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA
           damage, DNA recombinat repair, nucleotide-binding; HET:
           DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
          Length = 400

 Score = 27.8 bits (61), Expect = 4.2
 Identities = 22/129 (17%), Positives = 37/129 (28%), Gaps = 7/129 (5%)

Query: 193 KTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVP 252
           K+ L                   +   ID E    P     I    G+D    L   +  
Sbjct: 191 KSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYA 250

Query: 253 MIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTL 312
               +   L  LD         + + S     ++   +  A    + SG G++      L
Sbjct: 251 RAYNADHQLRLLDA-------AAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHL 303

Query: 313 AQGLEILFR 321
           A+ +  L R
Sbjct: 304 AKFMRALQR 312


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.321    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,141,788
Number of extensions: 150799
Number of successful extensions: 435
Number of sequences better than 10.0: 1
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 14
Length of query: 350
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 257
Effective length of database: 3,438,538
Effective search space: 883704266
Effective search space used: 883704266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)