BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781146|ref|YP_003065559.1| hypothetical protein
CLIBASIA_05265 [Candidatus Liberibacter asiaticus str. psy62]
         (122 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781146|ref|YP_003065559.1| hypothetical protein CLIBASIA_05265 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040823|gb|ACT57619.1| hypothetical protein CLIBASIA_05265 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 122

 Score =  247 bits (630), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 122/122 (100%), Positives = 122/122 (100%)

Query: 1   MSPLTLLPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRL 60
           MSPLTLLPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRL
Sbjct: 1   MSPLTLLPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRL 60

Query: 61  ISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA 120
           ISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA
Sbjct: 61  ISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA 120

Query: 121 SS 122
           SS
Sbjct: 121 SS 122


>gi|315122537|ref|YP_004063026.1| hypothetical protein CKC_03945 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495939|gb|ADR52538.1| hypothetical protein CKC_03945 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 117

 Score =  140 bits (354), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 71/106 (66%), Positives = 87/106 (82%)

Query: 12  KYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIK 71
           KY   N+L H++ISLQ LY++VL  DFSK+GRKV+KNLR+EKPEQYLRLI+QILP+E IK
Sbjct: 12  KYSEKNQLFHQDISLQRLYKNVLIKDFSKHGRKVVKNLRKEKPEQYLRLIAQILPKENIK 71

Query: 72  QDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETT 117
           ++   NGD LTDEQLCEIIRSLEKELQ+ TD KN+D    + K+TT
Sbjct: 72  EEETINGDPLTDEQLCEIIRSLEKELQLVTDSKNQDVCPTKVKKTT 117


>gi|227821701|ref|YP_002825671.1| hypothetical protein NGR_c11330 [Sinorhizobium fredii NGR234]
 gi|227340700|gb|ACP24918.1| hypothetical protein NGR_c11330 [Sinorhizobium fredii NGR234]
          Length = 125

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 26  LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85
           L   +   +  DF ++G   I  +REEKP+QYL++I+ ILP++      I N D LTD+Q
Sbjct: 34  LGEAFIEAMHADFEQHGVAAIVRVREEKPDQYLKVIASILPKDLNVN--INNMDDLTDDQ 91

Query: 86  LCEIIRSLEKELQIFTDFKNKDAHSRETK-ETT 117
           L E IRSL+  ++ F D +        T  ETT
Sbjct: 92  LIERIRSLDSAIRPFLDAQGASGSVGGTGPETT 124


>gi|150397046|ref|YP_001327513.1| hypothetical protein Smed_1843 [Sinorhizobium medicae WSM419]
 gi|150028561|gb|ABR60678.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 126

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 37  DFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKE 96
           DF+++G  V+  +REEKPE YL+L+S ILP++     G    D+L+DEQL E I++L+  
Sbjct: 46  DFAQHGVGVLARIREEKPETYLKLVSSILPKDLSAATGCA--DELSDEQLIERIQALDAA 103

Query: 97  LQIFTDFKNKDAHSRETKETTKS 119
           ++     K +    R+     ++
Sbjct: 104 IRPLISGKKRAGGMRKRPPPARA 126


>gi|15965773|ref|NP_386126.1| hypothetical protein SMc04191 [Sinorhizobium meliloti 1021]
 gi|307311307|ref|ZP_07590950.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
 gi|307318840|ref|ZP_07598272.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|15075042|emb|CAC46599.1| Hypothetical protein SMc04191 [Sinorhizobium meliloti 1021]
 gi|306895561|gb|EFN26315.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306899608|gb|EFN30236.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
          Length = 120

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 26  LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85
           L   +   +  DF+++G  VI  +REEKPE YL+L++ +LP++     G    D L+DEQ
Sbjct: 29  LGGSFLGAVQADFARHGVNVIARIREEKPEAYLKLVASVLPKDLSAATGGV--DDLSDEQ 86

Query: 86  LCEIIRSLEKELQIFTDFKNKDAHSRE 112
           + + IR+L+  ++     + +    R+
Sbjct: 87  IIDRIRALDAAIRPLLSLRKRAGGLRK 113


>gi|227822453|ref|YP_002826425.1| hypothetical protein NGR_c19080 [Sinorhizobium fredii NGR234]
 gi|227341454|gb|ACP25672.1| hypothetical protein NGR_c19080 [Sinorhizobium fredii NGR234]
          Length = 151

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 26  LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85
           L   +   +  DF+ +G  VI  +R EKPE YL+L++ +LP++     G T  D+L+D+Q
Sbjct: 59  LGSAFLDAVRADFAAHGVGVIARIRAEKPETYLKLVASLLPKDLNAAAGGT--DELSDDQ 116

Query: 86  LCEIIRSLEKELQ 98
           L E IR+L+  ++
Sbjct: 117 LIERIRALDSAIR 129


>gi|13471715|ref|NP_103282.1| hypothetical protein mll1773 [Mesorhizobium loti MAFF303099]
 gi|14022459|dbj|BAB49068.1| mll1773 [Mesorhizobium loti MAFF303099]
          Length = 130

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 30  YQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEI 89
           + + +  DF  +G  VI  +R +KP+QYL+++  +LPR+      I + D L+DE++   
Sbjct: 43  FLAAVRADFRAHGAGVIAEVRADKPDQYLKIVLSVLPRD--FDVAINHLDALSDEEIRSR 100

Query: 90  IRSLEKELQIF 100
           IR LE  L+ F
Sbjct: 101 IRGLETVLRPF 111


>gi|158422461|ref|YP_001523753.1| putative bacteriophage protein [Azorhizobium caulinodans ORS 571]
 gi|158329350|dbj|BAF86835.1| putative bacteriophage protein [Azorhizobium caulinodans ORS 571]
          Length = 220

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 26  LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85
           L   + + L DDF + G + I+ +REEKP+QYL++++ ILP+E +K   +T    L+D++
Sbjct: 129 LGEAFIAALHDDFIENGPETIQRVREEKPDQYLKVVASILPKE-LK---VTTEVDLSDDE 184

Query: 86  LCEIIRSLEKEL 97
           L   IR L   L
Sbjct: 185 LDRRIRQLAAAL 196


>gi|260463787|ref|ZP_05811984.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259030384|gb|EEW31663.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 131

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 30  YQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEI 89
           + + +  DF  +G  VI  +R +KP+QYL+++  +LP++      I   D L+DE++   
Sbjct: 44  FLAAVRADFRTHGAGVIAEVRADKPDQYLKIVLSVLPKD--FDVSINQLDGLSDEEIRSR 101

Query: 90  IRSLEKELQIF 100
           IR+LE  L+ F
Sbjct: 102 IRALETALRPF 112


>gi|298292906|ref|YP_003694845.1| bacteriophage protein [Starkeya novella DSM 506]
 gi|296929417|gb|ADH90226.1| putative bacteriophage protein [Starkeya novella DSM 506]
          Length = 106

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 5/65 (7%)

Query: 29 LYQSVLTD---DFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85
          L + +L+D   +F ++   VI  +RE KPE YL++++ +LPRE +K D   +  +L+D +
Sbjct: 22 LGEDLLSDLYINFRQHEPSVIAKVRETKPEVYLKVVASLLPRE-VKLDA-PDLRELSDAE 79

Query: 86 LCEII 90
          L  +I
Sbjct: 80 LMAVI 84


>gi|126338699|ref|XP_001363490.1| PREDICTED: similar to dynamin 1-like, isoform 3 [Monodelphis
           domestica]
          Length = 699

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 17/71 (23%), Positives = 36/71 (50%)

Query: 9   IRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPRE 68
           +RK+ P  N + H  ++++  Y +    DF+     +  N+ E++  +  R ++  +PR+
Sbjct: 472 LRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELTSTVPRD 531

Query: 69  KIKQDGITNGD 79
           K+   G   GD
Sbjct: 532 KVAPAGSGVGD 542


>gi|126338697|ref|XP_001363409.1| PREDICTED: similar to dynamin 1-like, isoform 2 [Monodelphis
           domestica]
          Length = 712

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 17/71 (23%), Positives = 36/71 (50%)

Query: 9   IRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPRE 68
           +RK+ P  N + H  ++++  Y +    DF+     +  N+ E++  +  R ++  +PR+
Sbjct: 485 LRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELTSTVPRD 544

Query: 69  KIKQDGITNGD 79
           K+   G   GD
Sbjct: 545 KVAPAGSGVGD 555


>gi|148557329|ref|YP_001264911.1| hypothetical protein Swit_4435 [Sphingomonas wittichii RW1]
 gi|148502519|gb|ABQ70773.1| hypothetical protein Swit_4435 [Sphingomonas wittichii RW1]
          Length = 99

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 4/57 (7%)

Query: 38 FSKYGRKVIKNLREEKPEQYLRLISQILP-REKIKQDGITNGDQLTDEQLCEIIRSL 93
          ++++G   I+ +R E+P  YLRL++  L  R + K D I   + L+D+++ + +R +
Sbjct: 33 WARHGAATIEQVRNERPHDYLRLMASSLAKRAEGKSDAI---EALSDDEIADELRHI 86


>gi|332968167|gb|EGK07249.1| isopentenyl-diphosphate delta-isomerase [Desmospora sp. 8437]
          Length = 579

 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 42  GRKVIKNLREEKPEQYL-RLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKE 96
           GR+V+    EE   +YL RL+ + +P E I +DG+    +L D Q  + IRS  KE
Sbjct: 148 GRRVLGRKAEEMLCRYLPRLVDEAIPAEAIDRDGVEERMRLVDNQ--QAIRSFLKE 201


>gi|58532639|gb|AAW78863.1| respiratory burst oxidase 1 [Medicago truncatula]
          Length = 932

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 34/68 (50%)

Query: 52  EKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSR 111
           E+ + Y  ++   L R++  Q G  N  Q  +   C   +S +  L+IF D  +KDA  R
Sbjct: 180 EESKAYAEMLFDTLARQRGIQGGSINKIQFREFWDCISDQSFDTRLKIFFDMVDKDADGR 239

Query: 112 ETKETTKS 119
            T+E  K+
Sbjct: 240 ITEEEIKN 247


>gi|242277606|ref|YP_002989735.1| PAS sensor protein [Desulfovibrio salexigens DSM 2638]
 gi|242120500|gb|ACS78196.1| PAS sensor protein [Desulfovibrio salexigens DSM 2638]
          Length = 2133

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 12/107 (11%)

Query: 23  EISLQY-LYQSVLTDD---------FSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQ 72
           EI+ QY L  S +TD          F+K GRK  ++   E   +YL   + ++  +  + 
Sbjct: 722 EIAAQYSLCISAITDPQERKEISMVFTKAGRKAKRSSAFETASRYLSTAALLIGSDGWET 781

Query: 73  DGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKS 119
              T+ D   D   CE +    K+ +    FKN   HS+  K+TTK+
Sbjct: 782 SYRTSFDLHLDWYECEFLNGSGKQAE--NVFKNMIGHSQNRKDTTKA 826


>gi|126338695|ref|XP_001363325.1| PREDICTED: similar to dynamin 1-like, isoform 1 [Monodelphis
           domestica]
          Length = 710

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 35/65 (53%)

Query: 9   IRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPRE 68
           +RK+ P  N + H  ++++  Y +    DF+     +  N+ E++  +  R ++  +PR+
Sbjct: 472 LRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELTSTVPRD 531

Query: 69  KIKQD 73
           K+ Q+
Sbjct: 532 KLIQE 536


>gi|85000025|ref|XP_954731.1| hypothetical protein [Theileria annulata]
 gi|65302877|emb|CAI75255.1| hypothetical protein TA02715 [Theileria annulata]
          Length = 917

 Score = 33.5 bits (75), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 46  IKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIR--SLEKELQIFTDF 103
           + ++R +KP   LR IS   P   + +DG  N     D++L E++R  S  +   I  DF
Sbjct: 590 VFHVRSDKPGLLLRFISSSEPVTYLLKDGQYNRSSFDDKELTEMLRFASYTEANYINVDF 649

Query: 104 KNKDAH 109
            N  A+
Sbjct: 650 YNYSAY 655


Searching..................................................done


Results from round 2




>gi|254781146|ref|YP_003065559.1| hypothetical protein CLIBASIA_05265 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040823|gb|ACT57619.1| hypothetical protein CLIBASIA_05265 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 122

 Score =  171 bits (434), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 122/122 (100%), Positives = 122/122 (100%)

Query: 1   MSPLTLLPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRL 60
           MSPLTLLPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRL
Sbjct: 1   MSPLTLLPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRL 60

Query: 61  ISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA 120
           ISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA
Sbjct: 61  ISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA 120

Query: 121 SS 122
           SS
Sbjct: 121 SS 122


>gi|315122537|ref|YP_004063026.1| hypothetical protein CKC_03945 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495939|gb|ADR52538.1| hypothetical protein CKC_03945 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 117

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/106 (66%), Positives = 87/106 (82%)

Query: 12  KYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIK 71
           KY   N+L H++ISLQ LY++VL  DFSK+GRKV+KNLR+EKPEQYLRLI+QILP+E IK
Sbjct: 12  KYSEKNQLFHQDISLQRLYKNVLIKDFSKHGRKVVKNLRKEKPEQYLRLIAQILPKENIK 71

Query: 72  QDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETT 117
           ++   NGD LTDEQLCEIIRSLEKELQ+ TD KN+D    + K+TT
Sbjct: 72  EEETINGDPLTDEQLCEIIRSLEKELQLVTDSKNQDVCPTKVKKTT 117


>gi|227821701|ref|YP_002825671.1| hypothetical protein NGR_c11330 [Sinorhizobium fredii NGR234]
 gi|227340700|gb|ACP24918.1| hypothetical protein NGR_c11330 [Sinorhizobium fredii NGR234]
          Length = 125

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 26  LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85
           L   +   +  DF ++G   I  +REEKP+QYL++I+ ILP++      I N D LTD+Q
Sbjct: 34  LGEAFIEAMHADFEQHGVAAIVRVREEKPDQYLKVIASILPKDLNVN--INNMDDLTDDQ 91

Query: 86  LCEIIRSLEKELQIFTDFKNKDAHSRETKETT 117
           L E IRSL+  ++ F D +        T   T
Sbjct: 92  LIERIRSLDSAIRPFLDAQGASGSVGGTGPET 123


>gi|150397046|ref|YP_001327513.1| hypothetical protein Smed_1843 [Sinorhizobium medicae WSM419]
 gi|150028561|gb|ABR60678.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 126

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 2/94 (2%)

Query: 26  LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85
           L   +   +  DF+++G  V+  +REEKPE YL+L+S ILP++     G    D+L+DEQ
Sbjct: 35  LGSSFLCAVQADFAQHGVGVLARIREEKPETYLKLVSSILPKDLSAATGCA--DELSDEQ 92

Query: 86  LCEIIRSLEKELQIFTDFKNKDAHSRETKETTKS 119
           L E I++L+  ++     K +    R+     ++
Sbjct: 93  LIERIQALDAAIRPLISGKKRAGGMRKRPPPARA 126


>gi|15965773|ref|NP_386126.1| hypothetical protein SMc04191 [Sinorhizobium meliloti 1021]
 gi|307311307|ref|ZP_07590950.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
 gi|307318840|ref|ZP_07598272.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|15075042|emb|CAC46599.1| Hypothetical protein SMc04191 [Sinorhizobium meliloti 1021]
 gi|306895561|gb|EFN26315.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306899608|gb|EFN30236.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
          Length = 120

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 26  LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85
           L   +   +  DF+++G  VI  +REEKPE YL+L++ +LP++     G    D L+DEQ
Sbjct: 29  LGGSFLGAVQADFARHGVNVIARIREEKPEAYLKLVASVLPKDLSAATGGV--DDLSDEQ 86

Query: 86  LCEIIRSLEKELQIFTDFKNKDAHSRETKETTK 118
           + + IR+L+  ++     + +    R+     K
Sbjct: 87  IIDRIRALDAAIRPLLSLRKRAGGLRKRVPPAK 119


>gi|227822453|ref|YP_002826425.1| hypothetical protein NGR_c19080 [Sinorhizobium fredii NGR234]
 gi|227341454|gb|ACP25672.1| hypothetical protein NGR_c19080 [Sinorhizobium fredii NGR234]
          Length = 151

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 26  LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85
           L   +   +  DF+ +G  VI  +R EKPE YL+L++ +LP++     G T  D+L+D+Q
Sbjct: 59  LGSAFLDAVRADFAAHGVGVIARIRAEKPETYLKLVASLLPKDLNAAAGGT--DELSDDQ 116

Query: 86  LCEIIRSLEKELQIFTDFKN 105
           L E IR+L+  ++   + + 
Sbjct: 117 LIERIRALDSAIRPLFNARK 136


>gi|260463787|ref|ZP_05811984.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259030384|gb|EEW31663.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 131

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 25  SLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDE 84
           +L   + + +  DF  +G  VI  +R +KP+QYL+++  +LP++      I   D L+DE
Sbjct: 39  TLGDDFLAAVRADFRTHGAGVIAEVRADKPDQYLKIVLSVLPKD--FDVSINQLDGLSDE 96

Query: 85  QLCEIIRSLEKELQIFTD 102
           ++   IR+LE  L+ F +
Sbjct: 97  EIRSRIRALETALRPFLE 114


>gi|13471715|ref|NP_103282.1| hypothetical protein mll1773 [Mesorhizobium loti MAFF303099]
 gi|14022459|dbj|BAB49068.1| mll1773 [Mesorhizobium loti MAFF303099]
          Length = 130

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 25  SLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDE 84
           +L   + + +  DF  +G  VI  +R +KP+QYL+++  +LPR+      I + D L+DE
Sbjct: 38  TLGDDFLAAVRADFRAHGAGVIAEVRADKPDQYLKIVLSVLPRD--FDVAINHLDALSDE 95

Query: 85  QLCEIIRSLEKELQIFTD 102
           ++   IR LE  L+ F +
Sbjct: 96  EIRSRIRGLETVLRPFLE 113


>gi|158422461|ref|YP_001523753.1| putative bacteriophage protein [Azorhizobium caulinodans ORS 571]
 gi|158329350|dbj|BAF86835.1| putative bacteriophage protein [Azorhizobium caulinodans ORS 571]
          Length = 220

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 26  LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85
           L   + + L DDF + G + I+ +REEKP+QYL++++ ILP+E      +T    L+D++
Sbjct: 129 LGEAFIAALHDDFIENGPETIQRVREEKPDQYLKVVASILPKEL----KVTTEVDLSDDE 184

Query: 86  LCEIIRSLEKEL 97
           L   IR L   L
Sbjct: 185 LDRRIRQLAAAL 196


>gi|298292906|ref|YP_003694845.1| bacteriophage protein [Starkeya novella DSM 506]
 gi|296929417|gb|ADH90226.1| putative bacteriophage protein [Starkeya novella DSM 506]
          Length = 106

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 26 LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85
          L     S L  +F ++   VI  +RE KPE YL++++ +LPRE        +  +L+D +
Sbjct: 22 LGEDLLSDLYINFRQHEPSVIAKVRETKPEVYLKVVASLLPREVKLDAP--DLRELSDAE 79

Query: 86 LCEII 90
          L  +I
Sbjct: 80 LMAVI 84


>gi|148557329|ref|YP_001264911.1| hypothetical protein Swit_4435 [Sphingomonas wittichii RW1]
 gi|148502519|gb|ABQ70773.1| hypothetical protein Swit_4435 [Sphingomonas wittichii RW1]
          Length = 99

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 30 YQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEI 89
          + + L   ++++G   I+ +R E+P  YLRL++  L +    +      + L+D+++ + 
Sbjct: 25 FLAELQASWARHGAATIEQVRNERPHDYLRLMASSLAK--RAEGKSDAIEALSDDEIADE 82

Query: 90 IRSL 93
          +R +
Sbjct: 83 LRHI 86


>gi|4212|emb|CAA41661.1| orf 5' to PPH3 [Saccharomyces cerevisiae]
          Length = 289

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 34  LTDDFSKYGRKVIKNL---REEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEII 90
           +   F   G +++K L   +  KP+  L+ IS+ LP++++    +  GD  TDE +   +
Sbjct: 127 VRPRFVNKG-EIVKRLVWHQHGKPQDMLKGISEKLPKDEMPDFVLCLGDDFTDEDMFRQL 185

Query: 91  RSLEKELQ-IFTDFKNKDAHSRETKETTKSAS 121
            ++E   +  + D KN+  +      T  SAS
Sbjct: 186 NTIETCWKEKYPDQKNQWGNYGFYPVTVGSAS 217


>gi|6320279|ref|NP_010359.1| Tps2p [Saccharomyces cerevisiae S288c]
 gi|1730010|sp|P31688|TPS2_YEAST RecName: Full=Trehalose-phosphatase; AltName: Full=Trehalose
           synthase complex catalytic subunit TPS2; AltName:
           Full=Trehalose-6-phosphate phosphatase; Short=TPP
 gi|577801|emb|CAA86796.1| trehalose-phosphatase [Saccharomyces cerevisiae]
 gi|1431537|emb|CAA98893.1| TPS2 [Saccharomyces cerevisiae]
 gi|259145317|emb|CAY78581.1| Tps2p [Saccharomyces cerevisiae EC1118]
 gi|285811096|tpg|DAA11920.1| TPA: Tps2p [Saccharomyces cerevisiae S288c]
          Length = 896

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 34  LTDDFSKYGRKVIKNL---REEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEII 90
           +   F   G +++K L   +  KP+  L+ IS+ LP++++    +  GD  TDE +   +
Sbjct: 734 VRPRFVNKG-EIVKRLVWHQHGKPQDMLKGISEKLPKDEMPDFVLCLGDDFTDEDMFRQL 792

Query: 91  RSLEKELQ-IFTDFKNKDAHSRETKETTKSAS 121
            ++E   +  + D KN+  +      T  SAS
Sbjct: 793 NTIETCWKEKYPDQKNQWGNYGFYPVTVGSAS 824


>gi|256269864|gb|EEU05123.1| Tps2p [Saccharomyces cerevisiae JAY291]
          Length = 896

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 34  LTDDFSKYGRKVIKNL---REEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEII 90
           +   F   G +++K L   +  KP+  L+ IS+ LP++++    +  GD  TDE +   +
Sbjct: 734 VRPRFVNKG-EIVKRLVWHQHGKPQDMLKGISEKLPKDEMPDFVLCLGDDFTDEDMFRQL 792

Query: 91  RSLEKELQ-IFTDFKNKDAHSRETKETTKSAS 121
            ++E   +  + D KN+  +      T  SAS
Sbjct: 793 NTIETCWKEKYPDQKNQWGNYGFYPVTVGSAS 824


>gi|190404958|gb|EDV08225.1| trehalose-phosphatase [Saccharomyces cerevisiae RM11-1a]
          Length = 896

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 34  LTDDFSKYGRKVIKNL---REEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEII 90
           +   F   G +++K L   +  KP+  L+ IS+ LP++++    +  GD  TDE +   +
Sbjct: 734 VRPRFVNKG-EIVKRLVWHQHGKPQDMLKGISEKLPKDEMPDFVLCLGDDFTDEDMFRQL 792

Query: 91  RSLEKELQ-IFTDFKNKDAHSRETKETTKSAS 121
            ++E   +  + D KN+  +      T  SAS
Sbjct: 793 NTIETCWKEKYPDQKNQWGNYGFYPVTVGSAS 824


>gi|406769|emb|CAA50025.1| trehalose-6-phosphate phosphatase [Saccharomyces cerevisiae]
          Length = 896

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 34  LTDDFSKYGRKVIKNL---REEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEII 90
           +   F   G +++K L   +  KP+  L+ IS+ LP++++    +  GD  TDE +   +
Sbjct: 734 VRPRFVNKG-EIVKRLVWHQHGKPQDMLKGISEKLPKDEMPDFVLCLGDDFTDEDMFRQL 792

Query: 91  RSLEKELQ-IFTDFKNKDAHSRETKETTKSAS 121
            ++E   +  + D KN+  +      T  SAS
Sbjct: 793 NTIETCWKEKYPDQKNQWGNYGFYPVTVGSAS 824


>gi|151942063|gb|EDN60419.1| trehalose-6-phosphate phosphatase [Saccharomyces cerevisiae YJM789]
 gi|207346782|gb|EDZ73177.1| YDR074Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 896

 Score = 37.8 bits (86), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 34  LTDDFSKYGRKVIKNL---REEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEII 90
           +   F   G +++K L   +  KP+  L+ I + LP++++    +  GD  TDE +   +
Sbjct: 734 VRPRFVNKG-EIVKRLVWHQHGKPQDMLKGIREKLPKDEMPDFVLCLGDDFTDEDMFRQL 792

Query: 91  RSLEKELQ-IFTDFKNKDAHSRETKETTKSAS 121
            ++E   +  + D KN+  +      T  SAS
Sbjct: 793 NTIETCWKEKYPDQKNQWGNYGFYPVTVGSAS 824


>gi|126338699|ref|XP_001363490.1| PREDICTED: similar to dynamin 1-like, isoform 3 [Monodelphis
           domestica]
          Length = 699

 Score = 37.8 bits (86), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 36/72 (50%)

Query: 9   IRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPRE 68
           +RK+ P  N + H  ++++  Y +    DF+     +  N+ E++  +  R ++  +PR+
Sbjct: 472 LRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELTSTVPRD 531

Query: 69  KIKQDGITNGDQ 80
           K+   G   GD 
Sbjct: 532 KVAPAGSGVGDG 543


>gi|126338697|ref|XP_001363409.1| PREDICTED: similar to dynamin 1-like, isoform 2 [Monodelphis
           domestica]
          Length = 712

 Score = 37.8 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 36/72 (50%)

Query: 9   IRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPRE 68
           +RK+ P  N + H  ++++  Y +    DF+     +  N+ E++  +  R ++  +PR+
Sbjct: 485 LRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELTSTVPRD 544

Query: 69  KIKQDGITNGDQ 80
           K+   G   GD 
Sbjct: 545 KVAPAGSGVGDG 556


>gi|251795846|ref|YP_003010577.1| xylulokinase [Paenibacillus sp. JDR-2]
 gi|247543472|gb|ACT00491.1| xylulokinase [Paenibacillus sp. JDR-2]
          Length = 499

 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 15  CINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKI-KQD 73
            +NRL  +E  L  L Q+ +   F       +  LRE +PE Y ++   +LP++ I  + 
Sbjct: 111 ELNRLFSQE-ELGGLIQNPVAAGFQ---LPSLMWLREHEPESYGKITHVMLPKDYIRFRL 166

Query: 74  GITNGDQLTD 83
               G   TD
Sbjct: 167 TGEIGVDTTD 176


>gi|160898744|ref|YP_001564326.1| AraC family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364328|gb|ABX35941.1| transcriptional regulator, AraC family [Delftia acidovorans SPH-1]
          Length = 338

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 24  ISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTD 83
           ++L         D   + G      +R E        I+++LP+ + +++ + +   LTD
Sbjct: 216 LALHEKLVETELDHLGQAGVG--ARVRHE--------IARLLPQGEPRREDVASLLGLTD 265

Query: 84  EQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKS 119
             L   +++ +   Q   D   ++   +   E  +S
Sbjct: 266 RTLQRRLQAEDTSYQQLLDETRRELALQYLGEPRRS 301


>gi|126338695|ref|XP_001363325.1| PREDICTED: similar to dynamin 1-like, isoform 1 [Monodelphis
           domestica]
          Length = 710

 Score = 35.1 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 35/66 (53%)

Query: 9   IRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPRE 68
           +RK+ P  N + H  ++++  Y +    DF+     +  N+ E++  +  R ++  +PR+
Sbjct: 472 LRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELTSTVPRD 531

Query: 69  KIKQDG 74
           K+ Q+ 
Sbjct: 532 KLIQES 537


>gi|229818674|ref|YP_002880200.1| lipolytic protein G-D-S-L family [Beutenbergia cavernae DSM 12333]
 gi|229564587|gb|ACQ78438.1| lipolytic protein G-D-S-L family [Beutenbergia cavernae DSM 12333]
          Length = 340

 Score = 35.1 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 38  FSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKEL 97
           F+ +    ++ +R   P+  L +I+   P     ++   N    T EQ+ E +RS+   L
Sbjct: 225 FAAHASAFVERVRAAHPDATLVVIT---PIASPARETTPNAVDFTLEQMREDLRSVVDVL 281

Query: 98  Q 98
           Q
Sbjct: 282 Q 282


>gi|294674640|ref|YP_003575256.1| ABC transporter permease [Prevotella ruminicola 23]
 gi|294474339|gb|ADE83728.1| ABC transporter, permease protein [Prevotella ruminicola 23]
          Length = 806

 Score = 34.7 bits (78), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 57  YLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRE 112
           Y+RL   I P +   Q      D L  ++L +    L+  L+   D+  +D  +R 
Sbjct: 241 YVRLAEGITPDDLKAQIAKMRRDNLPADELKKAGVDLDYSLRPLADYHTQDDATRR 296


>gi|242348085|ref|YP_002995646.1| type IV secretion-like conjugative transfer system protein TraH
           [Aeromonas hydrophila]
 gi|224831904|gb|ACN67035.1| type IV secretion-like conjugative transfer system protein TraH
           [Aeromonas hydrophila]
          Length = 477

 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 19  LSHKEISLQYLYQSVLTDDF-----SKYGRKVIKNLREEKPEQYLRLISQILPREKIKQD 73
           L HK  +      S L +DF        G+  ++ L+  KP++Y ++I  I+ ++  K +
Sbjct: 172 LKHKTDASITATTSGLYEDFFGSKQETSGKSPLEELKANKPDEYNKMIGNIVWKQL-KSN 230

Query: 74  GITNGDQLTDEQLCEIIRSLEKELQI--FTDFKNKDAHSRETKETT 117
                 Q  D  L E I SL   + I    +  N      +T   T
Sbjct: 231 NANTWFQYGDNTLLEAIMSLTGTVIIGDLVNDPNSTGSGAKTTPLT 276


>gi|224055255|ref|XP_002298446.1| predicted protein [Populus trichocarpa]
 gi|222845704|gb|EEE83251.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 38  FSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKEL 97
           F+ + R + + +R  +  + +R + ++ P +  KQ    +   L+     E+I+ L+K++
Sbjct: 342 FATHPRSIAERVRRTRISERMRKLQELFP-DMDKQTSTADKLDLS----IELIKDLQKQV 396

Query: 98  QIFTDFKNKDAHSRETK 114
           +   D K K   S + K
Sbjct: 397 KSLADTKAKCTCSSKQK 413


>gi|258624147|ref|ZP_05719097.1| TraH protein [Vibrio mimicus VM603]
 gi|258583578|gb|EEW08377.1| TraH protein [Vibrio mimicus VM603]
          Length = 477

 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 19  LSHKEISLQYLYQSVLTDDF-----SKYGRKVIKNLREEKPEQYLRLISQILPREKIKQD 73
           L HK  +      S L +DF        G+  ++ L+  KP++Y ++I  I+ ++  K +
Sbjct: 172 LKHKTDASITATTSGLYEDFFGSKQETSGKSPLEELKANKPDEYNKMIGNIVWKQL-KSN 230

Query: 74  GITNGDQLTDEQLCEIIRSLEKELQI--FTDFKNKDAHSRETKETT 117
                 Q  D  L E I SL   + I    +  N      +T   T
Sbjct: 231 NANTWFQYGDNTLLEAIMSLTGTVIIGDLVNDPNSTGTGAKTTPLT 276


>gi|163644905|gb|ABY28342.1| putative pilus assembly and synthesis protein [Vibrio cholerae
           O139]
          Length = 472

 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 19  LSHKEISLQYLYQSVLTDDF-----SKYGRKVIKNLREEKPEQYLRLISQILPREKIKQD 73
           L HK  +      S L +DF        G+  ++ L+  KP++Y ++I  I+ ++  K +
Sbjct: 167 LKHKTDASITATTSGLYEDFFGSKQETSGKSPLEELKANKPDEYNKMIGNIVWKQL-KSN 225

Query: 74  GITNGDQLTDEQLCEIIRSLEKELQI--FTDFKNKDAHSRETKETT 117
                 Q  D  L E I SL   + I    +  N      +T   T
Sbjct: 226 NANTWFQYGDNTLLEAIMSLTGTVIIGDLVNDPNSTGTGAKTTPLT 271


>gi|134044544|ref|YP_001101870.1| type IV conjugative transfer system protein TraH [Yersinia ruckeri]
 gi|133904907|gb|ABO40924.1| type IV conjugative transfer system protein TraH [Yersinia ruckeri]
          Length = 477

 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 19  LSHKEISLQYLYQSVLTDDF-----SKYGRKVIKNLREEKPEQYLRLISQILPREKIKQD 73
           L HK  +      S L +DF        G+  ++ L+  KP++Y ++I  I+ ++  K +
Sbjct: 172 LKHKTDASITATTSGLYEDFFGSKQETSGKSPLEELKANKPDEYNKMIGNIVWKQL-KSN 230

Query: 74  GITNGDQLTDEQLCEIIRSLEKELQI--FTDFKNKDAHSRETKETT 117
                 Q  D  L E I SL   + I    +  N      +T   T
Sbjct: 231 NANTWFQYGDNTLLEAIMSLTGTVIIGDLVNDPNSTGTGAKTTPLT 276


>gi|118602018|ref|YP_908718.1| putative pilus assembly protein [Photobacterium damselae subsp.
           piscicida]
 gi|118614756|ref|YP_908539.1| putative pilus assembly protein [Photobacterium damselae subsp.
           piscicida]
 gi|134044926|ref|YP_001102272.1| type IV conjugative transfer system protein TraH [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|134047117|ref|YP_001102060.1| type IV conjugative transfer system protein TraH [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|165938008|ref|ZP_02226568.1| TraH family protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|229516085|ref|ZP_04405535.1| IncF plasmid conjugative transfer pilus assembly protein TraH
           [Vibrio cholerae RC9]
 gi|237640352|ref|YP_002891207.1| TraH [Escherichia coli]
 gi|237810087|ref|YP_002894527.1| TraH [Escherichia coli]
 gi|237810267|ref|YP_002894706.1| TraH [Salmonella enterica]
 gi|300927188|ref|ZP_07142925.1| TraH protein [Escherichia coli MS 182-1]
 gi|309796479|ref|ZP_07690887.1| TraH protein [Escherichia coli MS 145-7]
 gi|118596847|dbj|BAF38151.1| putative pilus assembly protein [Photobacterium damselae subsp.
           piscicida]
 gi|118597027|dbj|BAF38330.1| putative pilus assembly protein [Photobacterium damselae subsp.
           piscicida]
 gi|133905036|gb|ABO41051.1| type IV conjugative transfer system protein TraH [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|133905460|gb|ABO42222.1| type IV conjugative transfer system protein TraH [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165914031|gb|EDR32648.1| TraH family protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|229346865|gb|EEO11833.1| IncF plasmid conjugative transfer pilus assembly protein TraH
           [Vibrio cholerae RC9]
 gi|229561571|gb|ACQ77774.1| TraH [Escherichia coli]
 gi|229561751|gb|ACQ77953.1| TraH [Salmonella enterica]
 gi|229561943|gb|ACQ78144.1| TraH [Escherichia coli]
 gi|300416855|gb|EFK00166.1| TraH protein [Escherichia coli MS 182-1]
 gi|308119984|gb|EFO57246.1| TraH protein [Escherichia coli MS 145-7]
 gi|324007614|gb|EGB76833.1| TraH protein [Escherichia coli MS 57-2]
 gi|327536624|gb|AEA95457.1| IncF plasmid conjugative transfer pilus assembly protein TraH
           [Salmonella enterica subsp. enterica serovar Dublin]
 gi|332144547|dbj|BAK19767.1| type IV conjugative transfer system protein [Salmonella enterica
           subsp. enterica serovar Typhimurium]
          Length = 477

 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 19  LSHKEISLQYLYQSVLTDDF-----SKYGRKVIKNLREEKPEQYLRLISQILPREKIKQD 73
           L HK  +      S L +DF        G+  ++ L+  KP++Y ++I  I+ ++  K +
Sbjct: 172 LKHKTDASITATTSGLYEDFFGSKQETSGKSPLEELKANKPDEYNKMIGNIVWKQL-KSN 230

Query: 74  GITNGDQLTDEQLCEIIRSLEKELQI--FTDFKNKDAHSRETKETT 117
                 Q  D  L E I SL   + I    +  N      +T   T
Sbjct: 231 NANTWFQYGDNTLLEAIMSLTGTVIIGDLVNDPNSTGTGAKTTPLT 276


>gi|291392441|ref|XP_002712725.1| PREDICTED: dynamin 1-like [Oryctolagus cuniculus]
          Length = 712

 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 34/71 (47%)

Query: 9   IRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPRE 68
           +RK+ P  N + H  ++++  Y +    DF+     +  N+ E++  +  R +   + R+
Sbjct: 485 LRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELPSAVSRD 544

Query: 69  KIKQDGITNGD 79
           K+   G   GD
Sbjct: 545 KVATGGGGVGD 555


>gi|330005178|ref|ZP_08305140.1| ATP synthase F1, delta subunit [Klebsiella sp. MS 92-3]
 gi|328536384|gb|EGF62743.1| ATP synthase F1, delta subunit [Klebsiella sp. MS 92-3]
          Length = 177

 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 25  SLQYLYQSVLTDDFSKYGRKVIKNLREEK-----PEQYLRLISQILPREKIKQDGITNGD 79
           +L   + ++  +   + G+ +IK + E       P+   + I      E I +  + + +
Sbjct: 56  TLSEAFIAICGEQLDENGQNLIKVMAENNRLKVLPDVLEQFIHLRAASEAIAEVEVISAN 115

Query: 80  QLTDEQLCEIIRSLEKEL 97
           QL+DEQL  I+ ++EK L
Sbjct: 116 QLSDEQLARIVSAMEKRL 133


>gi|206580485|ref|YP_002241284.1| ATP synthase F1, delta subunit [Klebsiella pneumoniae 342]
 gi|288937923|ref|YP_003441982.1| ATP synthase F1 subunit delta [Klebsiella variicola At-22]
 gi|290511663|ref|ZP_06551031.1| ATP synthase F1, delta subunit [Klebsiella sp. 1_1_55]
 gi|229554327|sp|B5XZM1|ATPD_KLEP3 RecName: Full=ATP synthase subunit delta; AltName: Full=ATP
           synthase F(1) sector subunit delta; AltName: Full=F-type
           ATPase subunit delta; Short=F-ATPase subunit delta
 gi|206569543|gb|ACI11319.1| ATP synthase F1, delta subunit [Klebsiella pneumoniae 342]
 gi|288892632|gb|ADC60950.1| ATP synthase F1, delta subunit [Klebsiella variicola At-22]
 gi|289775453|gb|EFD83453.1| ATP synthase F1, delta subunit [Klebsiella sp. 1_1_55]
          Length = 177

 Score = 33.9 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 25  SLQYLYQSVLTDDFSKYGRKVIKNLREEK-----PEQYLRLISQILPREKIKQDGITNGD 79
           +L   + ++  +   + G+ +IK + E       P+   + I      E I +  + + +
Sbjct: 56  TLSEAFIAICGEQLDENGQNLIKVMAENNRLKVLPDVLEQFIHLRAASEAIAEVEVISAN 115

Query: 80  QLTDEQLCEIIRSLEKEL 97
           QL+DEQL  I+ ++EK L
Sbjct: 116 QLSDEQLARIVSAMEKRL 133


>gi|152972644|ref|YP_001337790.1| F0F1 ATP synthase subunit delta [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238897242|ref|YP_002921990.1| F0F1 ATP synthase subunit delta [Klebsiella pneumoniae NTUH-K2044]
 gi|262040360|ref|ZP_06013606.1| ATP synthase F1 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|229554328|sp|A6TG39|ATPD_KLEP7 RecName: Full=ATP synthase subunit delta; AltName: Full=ATP
           synthase F(1) sector subunit delta; AltName: Full=F-type
           ATPase subunit delta; Short=F-ATPase subunit delta
 gi|150957493|gb|ABR79523.1| ATP synthase subunit D [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238549572|dbj|BAH65923.1| ATP synthase subunit D [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259042301|gb|EEW43326.1| ATP synthase F1 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 177

 Score = 33.9 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 25  SLQYLYQSVLTDDFSKYGRKVIKNLREEK-----PEQYLRLISQILPREKIKQDGITNGD 79
           +L   + ++  +   + G+ +IK + E       P+   + I      E I +  + + +
Sbjct: 56  TLSEAFIAICGEQLDENGQNLIKVMAENNRLKVLPDVLEQFIHLRAASEAIAEVEVISAN 115

Query: 80  QLTDEQLCEIIRSLEKEL 97
           QL+DEQL  I+ ++EK L
Sbjct: 116 QLSDEQLARIVSAMEKRL 133


>gi|224106043|ref|XP_002314023.1| predicted protein [Populus trichocarpa]
 gi|222850431|gb|EEE87978.1| predicted protein [Populus trichocarpa]
          Length = 421

 Score = 33.6 bits (75), Expect = 8.5,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 38  FSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKEL 97
           F+ + R + + +R  +  + +R + ++ P            D L  +   E I+ L+K++
Sbjct: 343 FATHPRSIAERVRRTRISERMRKLQELFP---NMDKQTNTADML--DLAVEHIKDLQKQV 397

Query: 98  QIFTDFKNKDAHSRETK 114
           +  TD K K   S + K
Sbjct: 398 KTLTDTKAKCTCSSKQK 414


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.310    0.129    0.324 

Lambda     K      H
   0.267   0.0395    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,872,421,692
Number of Sequences: 14124377
Number of extensions: 62396070
Number of successful extensions: 172441
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 172394
Number of HSP's gapped (non-prelim): 107
length of query: 122
length of database: 4,842,793,630
effective HSP length: 89
effective length of query: 33
effective length of database: 3,585,724,077
effective search space: 118328894541
effective search space used: 118328894541
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 75 (33.6 bits)