BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781146|ref|YP_003065559.1| hypothetical protein CLIBASIA_05265 [Candidatus Liberibacter asiaticus str. psy62] (122 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781146|ref|YP_003065559.1| hypothetical protein CLIBASIA_05265 [Candidatus Liberibacter asiaticus str. psy62] gi|254040823|gb|ACT57619.1| hypothetical protein CLIBASIA_05265 [Candidatus Liberibacter asiaticus str. psy62] Length = 122 Score = 247 bits (630), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 122/122 (100%), Positives = 122/122 (100%) Query: 1 MSPLTLLPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRL 60 MSPLTLLPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRL Sbjct: 1 MSPLTLLPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRL 60 Query: 61 ISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA 120 ISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA Sbjct: 61 ISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA 120 Query: 121 SS 122 SS Sbjct: 121 SS 122 >gi|315122537|ref|YP_004063026.1| hypothetical protein CKC_03945 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495939|gb|ADR52538.1| hypothetical protein CKC_03945 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 117 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 71/106 (66%), Positives = 87/106 (82%) Query: 12 KYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIK 71 KY N+L H++ISLQ LY++VL DFSK+GRKV+KNLR+EKPEQYLRLI+QILP+E IK Sbjct: 12 KYSEKNQLFHQDISLQRLYKNVLIKDFSKHGRKVVKNLRKEKPEQYLRLIAQILPKENIK 71 Query: 72 QDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETT 117 ++ NGD LTDEQLCEIIRSLEKELQ+ TD KN+D + K+TT Sbjct: 72 EEETINGDPLTDEQLCEIIRSLEKELQLVTDSKNQDVCPTKVKKTT 117 >gi|227821701|ref|YP_002825671.1| hypothetical protein NGR_c11330 [Sinorhizobium fredii NGR234] gi|227340700|gb|ACP24918.1| hypothetical protein NGR_c11330 [Sinorhizobium fredii NGR234] Length = 125 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 3/93 (3%) Query: 26 LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85 L + + DF ++G I +REEKP+QYL++I+ ILP++ I N D LTD+Q Sbjct: 34 LGEAFIEAMHADFEQHGVAAIVRVREEKPDQYLKVIASILPKDLNVN--INNMDDLTDDQ 91 Query: 86 LCEIIRSLEKELQIFTDFKNKDAHSRETK-ETT 117 L E IRSL+ ++ F D + T ETT Sbjct: 92 LIERIRSLDSAIRPFLDAQGASGSVGGTGPETT 124 >gi|150397046|ref|YP_001327513.1| hypothetical protein Smed_1843 [Sinorhizobium medicae WSM419] gi|150028561|gb|ABR60678.1| conserved hypothetical protein [Sinorhizobium medicae WSM419] Length = 126 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 2/83 (2%) Query: 37 DFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKE 96 DF+++G V+ +REEKPE YL+L+S ILP++ G D+L+DEQL E I++L+ Sbjct: 46 DFAQHGVGVLARIREEKPETYLKLVSSILPKDLSAATGCA--DELSDEQLIERIQALDAA 103 Query: 97 LQIFTDFKNKDAHSRETKETTKS 119 ++ K + R+ ++ Sbjct: 104 IRPLISGKKRAGGMRKRPPPARA 126 >gi|15965773|ref|NP_386126.1| hypothetical protein SMc04191 [Sinorhizobium meliloti 1021] gi|307311307|ref|ZP_07590950.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] gi|307318840|ref|ZP_07598272.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|15075042|emb|CAC46599.1| Hypothetical protein SMc04191 [Sinorhizobium meliloti 1021] gi|306895561|gb|EFN26315.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|306899608|gb|EFN30236.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] Length = 120 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 2/87 (2%) Query: 26 LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85 L + + DF+++G VI +REEKPE YL+L++ +LP++ G D L+DEQ Sbjct: 29 LGGSFLGAVQADFARHGVNVIARIREEKPEAYLKLVASVLPKDLSAATGGV--DDLSDEQ 86 Query: 86 LCEIIRSLEKELQIFTDFKNKDAHSRE 112 + + IR+L+ ++ + + R+ Sbjct: 87 IIDRIRALDAAIRPLLSLRKRAGGLRK 113 >gi|227822453|ref|YP_002826425.1| hypothetical protein NGR_c19080 [Sinorhizobium fredii NGR234] gi|227341454|gb|ACP25672.1| hypothetical protein NGR_c19080 [Sinorhizobium fredii NGR234] Length = 151 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 2/73 (2%) Query: 26 LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85 L + + DF+ +G VI +R EKPE YL+L++ +LP++ G T D+L+D+Q Sbjct: 59 LGSAFLDAVRADFAAHGVGVIARIRAEKPETYLKLVASLLPKDLNAAAGGT--DELSDDQ 116 Query: 86 LCEIIRSLEKELQ 98 L E IR+L+ ++ Sbjct: 117 LIERIRALDSAIR 129 >gi|13471715|ref|NP_103282.1| hypothetical protein mll1773 [Mesorhizobium loti MAFF303099] gi|14022459|dbj|BAB49068.1| mll1773 [Mesorhizobium loti MAFF303099] Length = 130 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Query: 30 YQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEI 89 + + + DF +G VI +R +KP+QYL+++ +LPR+ I + D L+DE++ Sbjct: 43 FLAAVRADFRAHGAGVIAEVRADKPDQYLKIVLSVLPRD--FDVAINHLDALSDEEIRSR 100 Query: 90 IRSLEKELQIF 100 IR LE L+ F Sbjct: 101 IRGLETVLRPF 111 >gi|158422461|ref|YP_001523753.1| putative bacteriophage protein [Azorhizobium caulinodans ORS 571] gi|158329350|dbj|BAF86835.1| putative bacteriophage protein [Azorhizobium caulinodans ORS 571] Length = 220 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 4/72 (5%) Query: 26 LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85 L + + L DDF + G + I+ +REEKP+QYL++++ ILP+E +K +T L+D++ Sbjct: 129 LGEAFIAALHDDFIENGPETIQRVREEKPDQYLKVVASILPKE-LK---VTTEVDLSDDE 184 Query: 86 LCEIIRSLEKEL 97 L IR L L Sbjct: 185 LDRRIRQLAAAL 196 >gi|260463787|ref|ZP_05811984.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] gi|259030384|gb|EEW31663.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] Length = 131 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Query: 30 YQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEI 89 + + + DF +G VI +R +KP+QYL+++ +LP++ I D L+DE++ Sbjct: 44 FLAAVRADFRTHGAGVIAEVRADKPDQYLKIVLSVLPKD--FDVSINQLDGLSDEEIRSR 101 Query: 90 IRSLEKELQIF 100 IR+LE L+ F Sbjct: 102 IRALETALRPF 112 >gi|298292906|ref|YP_003694845.1| bacteriophage protein [Starkeya novella DSM 506] gi|296929417|gb|ADH90226.1| putative bacteriophage protein [Starkeya novella DSM 506] Length = 106 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 5/65 (7%) Query: 29 LYQSVLTD---DFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85 L + +L+D +F ++ VI +RE KPE YL++++ +LPRE +K D + +L+D + Sbjct: 22 LGEDLLSDLYINFRQHEPSVIAKVRETKPEVYLKVVASLLPRE-VKLDA-PDLRELSDAE 79 Query: 86 LCEII 90 L +I Sbjct: 80 LMAVI 84 >gi|126338699|ref|XP_001363490.1| PREDICTED: similar to dynamin 1-like, isoform 3 [Monodelphis domestica] Length = 699 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 36/71 (50%) Query: 9 IRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPRE 68 +RK+ P N + H ++++ Y + DF+ + N+ E++ + R ++ +PR+ Sbjct: 472 LRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELTSTVPRD 531 Query: 69 KIKQDGITNGD 79 K+ G GD Sbjct: 532 KVAPAGSGVGD 542 >gi|126338697|ref|XP_001363409.1| PREDICTED: similar to dynamin 1-like, isoform 2 [Monodelphis domestica] Length = 712 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 36/71 (50%) Query: 9 IRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPRE 68 +RK+ P N + H ++++ Y + DF+ + N+ E++ + R ++ +PR+ Sbjct: 485 LRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELTSTVPRD 544 Query: 69 KIKQDGITNGD 79 K+ G GD Sbjct: 545 KVAPAGSGVGD 555 >gi|148557329|ref|YP_001264911.1| hypothetical protein Swit_4435 [Sphingomonas wittichii RW1] gi|148502519|gb|ABQ70773.1| hypothetical protein Swit_4435 [Sphingomonas wittichii RW1] Length = 99 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 4/57 (7%) Query: 38 FSKYGRKVIKNLREEKPEQYLRLISQILP-REKIKQDGITNGDQLTDEQLCEIIRSL 93 ++++G I+ +R E+P YLRL++ L R + K D I + L+D+++ + +R + Sbjct: 33 WARHGAATIEQVRNERPHDYLRLMASSLAKRAEGKSDAI---EALSDDEIADELRHI 86 >gi|332968167|gb|EGK07249.1| isopentenyl-diphosphate delta-isomerase [Desmospora sp. 8437] Length = 579 Score = 34.7 bits (78), Expect = 4.6, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Query: 42 GRKVIKNLREEKPEQYL-RLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKE 96 GR+V+ EE +YL RL+ + +P E I +DG+ +L D Q + IRS KE Sbjct: 148 GRRVLGRKAEEMLCRYLPRLVDEAIPAEAIDRDGVEERMRLVDNQ--QAIRSFLKE 201 >gi|58532639|gb|AAW78863.1| respiratory burst oxidase 1 [Medicago truncatula] Length = 932 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 34/68 (50%) Query: 52 EKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSR 111 E+ + Y ++ L R++ Q G N Q + C +S + L+IF D +KDA R Sbjct: 180 EESKAYAEMLFDTLARQRGIQGGSINKIQFREFWDCISDQSFDTRLKIFFDMVDKDADGR 239 Query: 112 ETKETTKS 119 T+E K+ Sbjct: 240 ITEEEIKN 247 >gi|242277606|ref|YP_002989735.1| PAS sensor protein [Desulfovibrio salexigens DSM 2638] gi|242120500|gb|ACS78196.1| PAS sensor protein [Desulfovibrio salexigens DSM 2638] Length = 2133 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 12/107 (11%) Query: 23 EISLQY-LYQSVLTDD---------FSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQ 72 EI+ QY L S +TD F+K GRK ++ E +YL + ++ + + Sbjct: 722 EIAAQYSLCISAITDPQERKEISMVFTKAGRKAKRSSAFETASRYLSTAALLIGSDGWET 781 Query: 73 DGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKS 119 T+ D D CE + K+ + FKN HS+ K+TTK+ Sbjct: 782 SYRTSFDLHLDWYECEFLNGSGKQAE--NVFKNMIGHSQNRKDTTKA 826 >gi|126338695|ref|XP_001363325.1| PREDICTED: similar to dynamin 1-like, isoform 1 [Monodelphis domestica] Length = 710 Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust. Identities = 15/65 (23%), Positives = 35/65 (53%) Query: 9 IRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPRE 68 +RK+ P N + H ++++ Y + DF+ + N+ E++ + R ++ +PR+ Sbjct: 472 LRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELTSTVPRD 531 Query: 69 KIKQD 73 K+ Q+ Sbjct: 532 KLIQE 536 >gi|85000025|ref|XP_954731.1| hypothetical protein [Theileria annulata] gi|65302877|emb|CAI75255.1| hypothetical protein TA02715 [Theileria annulata] Length = 917 Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 46 IKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIR--SLEKELQIFTDF 103 + ++R +KP LR IS P + +DG N D++L E++R S + I DF Sbjct: 590 VFHVRSDKPGLLLRFISSSEPVTYLLKDGQYNRSSFDDKELTEMLRFASYTEANYINVDF 649 Query: 104 KNKDAH 109 N A+ Sbjct: 650 YNYSAY 655 Searching..................................................done Results from round 2 >gi|254781146|ref|YP_003065559.1| hypothetical protein CLIBASIA_05265 [Candidatus Liberibacter asiaticus str. psy62] gi|254040823|gb|ACT57619.1| hypothetical protein CLIBASIA_05265 [Candidatus Liberibacter asiaticus str. psy62] Length = 122 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 122/122 (100%), Positives = 122/122 (100%) Query: 1 MSPLTLLPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRL 60 MSPLTLLPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRL Sbjct: 1 MSPLTLLPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRL 60 Query: 61 ISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA 120 ISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA Sbjct: 61 ISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA 120 Query: 121 SS 122 SS Sbjct: 121 SS 122 >gi|315122537|ref|YP_004063026.1| hypothetical protein CKC_03945 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495939|gb|ADR52538.1| hypothetical protein CKC_03945 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 117 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 71/106 (66%), Positives = 87/106 (82%) Query: 12 KYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIK 71 KY N+L H++ISLQ LY++VL DFSK+GRKV+KNLR+EKPEQYLRLI+QILP+E IK Sbjct: 12 KYSEKNQLFHQDISLQRLYKNVLIKDFSKHGRKVVKNLRKEKPEQYLRLIAQILPKENIK 71 Query: 72 QDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETT 117 ++ NGD LTDEQLCEIIRSLEKELQ+ TD KN+D + K+TT Sbjct: 72 EEETINGDPLTDEQLCEIIRSLEKELQLVTDSKNQDVCPTKVKKTT 117 >gi|227821701|ref|YP_002825671.1| hypothetical protein NGR_c11330 [Sinorhizobium fredii NGR234] gi|227340700|gb|ACP24918.1| hypothetical protein NGR_c11330 [Sinorhizobium fredii NGR234] Length = 125 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 2/92 (2%) Query: 26 LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85 L + + DF ++G I +REEKP+QYL++I+ ILP++ I N D LTD+Q Sbjct: 34 LGEAFIEAMHADFEQHGVAAIVRVREEKPDQYLKVIASILPKDLNVN--INNMDDLTDDQ 91 Query: 86 LCEIIRSLEKELQIFTDFKNKDAHSRETKETT 117 L E IRSL+ ++ F D + T T Sbjct: 92 LIERIRSLDSAIRPFLDAQGASGSVGGTGPET 123 >gi|150397046|ref|YP_001327513.1| hypothetical protein Smed_1843 [Sinorhizobium medicae WSM419] gi|150028561|gb|ABR60678.1| conserved hypothetical protein [Sinorhizobium medicae WSM419] Length = 126 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 2/94 (2%) Query: 26 LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85 L + + DF+++G V+ +REEKPE YL+L+S ILP++ G D+L+DEQ Sbjct: 35 LGSSFLCAVQADFAQHGVGVLARIREEKPETYLKLVSSILPKDLSAATGCA--DELSDEQ 92 Query: 86 LCEIIRSLEKELQIFTDFKNKDAHSRETKETTKS 119 L E I++L+ ++ K + R+ ++ Sbjct: 93 LIERIQALDAAIRPLISGKKRAGGMRKRPPPARA 126 >gi|15965773|ref|NP_386126.1| hypothetical protein SMc04191 [Sinorhizobium meliloti 1021] gi|307311307|ref|ZP_07590950.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] gi|307318840|ref|ZP_07598272.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|15075042|emb|CAC46599.1| Hypothetical protein SMc04191 [Sinorhizobium meliloti 1021] gi|306895561|gb|EFN26315.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|306899608|gb|EFN30236.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] Length = 120 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 2/93 (2%) Query: 26 LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85 L + + DF+++G VI +REEKPE YL+L++ +LP++ G D L+DEQ Sbjct: 29 LGGSFLGAVQADFARHGVNVIARIREEKPEAYLKLVASVLPKDLSAATGGV--DDLSDEQ 86 Query: 86 LCEIIRSLEKELQIFTDFKNKDAHSRETKETTK 118 + + IR+L+ ++ + + R+ K Sbjct: 87 IIDRIRALDAAIRPLLSLRKRAGGLRKRVPPAK 119 >gi|227822453|ref|YP_002826425.1| hypothetical protein NGR_c19080 [Sinorhizobium fredii NGR234] gi|227341454|gb|ACP25672.1| hypothetical protein NGR_c19080 [Sinorhizobium fredii NGR234] Length = 151 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 2/80 (2%) Query: 26 LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85 L + + DF+ +G VI +R EKPE YL+L++ +LP++ G T D+L+D+Q Sbjct: 59 LGSAFLDAVRADFAAHGVGVIARIRAEKPETYLKLVASLLPKDLNAAAGGT--DELSDDQ 116 Query: 86 LCEIIRSLEKELQIFTDFKN 105 L E IR+L+ ++ + + Sbjct: 117 LIERIRALDSAIRPLFNARK 136 >gi|260463787|ref|ZP_05811984.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] gi|259030384|gb|EEW31663.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] Length = 131 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Query: 25 SLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDE 84 +L + + + DF +G VI +R +KP+QYL+++ +LP++ I D L+DE Sbjct: 39 TLGDDFLAAVRADFRTHGAGVIAEVRADKPDQYLKIVLSVLPKD--FDVSINQLDGLSDE 96 Query: 85 QLCEIIRSLEKELQIFTD 102 ++ IR+LE L+ F + Sbjct: 97 EIRSRIRALETALRPFLE 114 >gi|13471715|ref|NP_103282.1| hypothetical protein mll1773 [Mesorhizobium loti MAFF303099] gi|14022459|dbj|BAB49068.1| mll1773 [Mesorhizobium loti MAFF303099] Length = 130 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Query: 25 SLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDE 84 +L + + + DF +G VI +R +KP+QYL+++ +LPR+ I + D L+DE Sbjct: 38 TLGDDFLAAVRADFRAHGAGVIAEVRADKPDQYLKIVLSVLPRD--FDVAINHLDALSDE 95 Query: 85 QLCEIIRSLEKELQIFTD 102 ++ IR LE L+ F + Sbjct: 96 EIRSRIRGLETVLRPFLE 113 >gi|158422461|ref|YP_001523753.1| putative bacteriophage protein [Azorhizobium caulinodans ORS 571] gi|158329350|dbj|BAF86835.1| putative bacteriophage protein [Azorhizobium caulinodans ORS 571] Length = 220 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 4/72 (5%) Query: 26 LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85 L + + L DDF + G + I+ +REEKP+QYL++++ ILP+E +T L+D++ Sbjct: 129 LGEAFIAALHDDFIENGPETIQRVREEKPDQYLKVVASILPKEL----KVTTEVDLSDDE 184 Query: 86 LCEIIRSLEKEL 97 L IR L L Sbjct: 185 LDRRIRQLAAAL 196 >gi|298292906|ref|YP_003694845.1| bacteriophage protein [Starkeya novella DSM 506] gi|296929417|gb|ADH90226.1| putative bacteriophage protein [Starkeya novella DSM 506] Length = 106 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 26 LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85 L S L +F ++ VI +RE KPE YL++++ +LPRE + +L+D + Sbjct: 22 LGEDLLSDLYINFRQHEPSVIAKVRETKPEVYLKVVASLLPREVKLDAP--DLRELSDAE 79 Query: 86 LCEII 90 L +I Sbjct: 80 LMAVI 84 >gi|148557329|ref|YP_001264911.1| hypothetical protein Swit_4435 [Sphingomonas wittichii RW1] gi|148502519|gb|ABQ70773.1| hypothetical protein Swit_4435 [Sphingomonas wittichii RW1] Length = 99 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Query: 30 YQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEI 89 + + L ++++G I+ +R E+P YLRL++ L + + + L+D+++ + Sbjct: 25 FLAELQASWARHGAATIEQVRNERPHDYLRLMASSLAK--RAEGKSDAIEALSDDEIADE 82 Query: 90 IRSL 93 +R + Sbjct: 83 LRHI 86 >gi|4212|emb|CAA41661.1| orf 5' to PPH3 [Saccharomyces cerevisiae] Length = 289 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%) Query: 34 LTDDFSKYGRKVIKNL---REEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEII 90 + F G +++K L + KP+ L+ IS+ LP++++ + GD TDE + + Sbjct: 127 VRPRFVNKG-EIVKRLVWHQHGKPQDMLKGISEKLPKDEMPDFVLCLGDDFTDEDMFRQL 185 Query: 91 RSLEKELQ-IFTDFKNKDAHSRETKETTKSAS 121 ++E + + D KN+ + T SAS Sbjct: 186 NTIETCWKEKYPDQKNQWGNYGFYPVTVGSAS 217 >gi|6320279|ref|NP_010359.1| Tps2p [Saccharomyces cerevisiae S288c] gi|1730010|sp|P31688|TPS2_YEAST RecName: Full=Trehalose-phosphatase; AltName: Full=Trehalose synthase complex catalytic subunit TPS2; AltName: Full=Trehalose-6-phosphate phosphatase; Short=TPP gi|577801|emb|CAA86796.1| trehalose-phosphatase [Saccharomyces cerevisiae] gi|1431537|emb|CAA98893.1| TPS2 [Saccharomyces cerevisiae] gi|259145317|emb|CAY78581.1| Tps2p [Saccharomyces cerevisiae EC1118] gi|285811096|tpg|DAA11920.1| TPA: Tps2p [Saccharomyces cerevisiae S288c] Length = 896 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%) Query: 34 LTDDFSKYGRKVIKNL---REEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEII 90 + F G +++K L + KP+ L+ IS+ LP++++ + GD TDE + + Sbjct: 734 VRPRFVNKG-EIVKRLVWHQHGKPQDMLKGISEKLPKDEMPDFVLCLGDDFTDEDMFRQL 792 Query: 91 RSLEKELQ-IFTDFKNKDAHSRETKETTKSAS 121 ++E + + D KN+ + T SAS Sbjct: 793 NTIETCWKEKYPDQKNQWGNYGFYPVTVGSAS 824 >gi|256269864|gb|EEU05123.1| Tps2p [Saccharomyces cerevisiae JAY291] Length = 896 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%) Query: 34 LTDDFSKYGRKVIKNL---REEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEII 90 + F G +++K L + KP+ L+ IS+ LP++++ + GD TDE + + Sbjct: 734 VRPRFVNKG-EIVKRLVWHQHGKPQDMLKGISEKLPKDEMPDFVLCLGDDFTDEDMFRQL 792 Query: 91 RSLEKELQ-IFTDFKNKDAHSRETKETTKSAS 121 ++E + + D KN+ + T SAS Sbjct: 793 NTIETCWKEKYPDQKNQWGNYGFYPVTVGSAS 824 >gi|190404958|gb|EDV08225.1| trehalose-phosphatase [Saccharomyces cerevisiae RM11-1a] Length = 896 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%) Query: 34 LTDDFSKYGRKVIKNL---REEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEII 90 + F G +++K L + KP+ L+ IS+ LP++++ + GD TDE + + Sbjct: 734 VRPRFVNKG-EIVKRLVWHQHGKPQDMLKGISEKLPKDEMPDFVLCLGDDFTDEDMFRQL 792 Query: 91 RSLEKELQ-IFTDFKNKDAHSRETKETTKSAS 121 ++E + + D KN+ + T SAS Sbjct: 793 NTIETCWKEKYPDQKNQWGNYGFYPVTVGSAS 824 >gi|406769|emb|CAA50025.1| trehalose-6-phosphate phosphatase [Saccharomyces cerevisiae] Length = 896 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%) Query: 34 LTDDFSKYGRKVIKNL---REEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEII 90 + F G +++K L + KP+ L+ IS+ LP++++ + GD TDE + + Sbjct: 734 VRPRFVNKG-EIVKRLVWHQHGKPQDMLKGISEKLPKDEMPDFVLCLGDDFTDEDMFRQL 792 Query: 91 RSLEKELQ-IFTDFKNKDAHSRETKETTKSAS 121 ++E + + D KN+ + T SAS Sbjct: 793 NTIETCWKEKYPDQKNQWGNYGFYPVTVGSAS 824 >gi|151942063|gb|EDN60419.1| trehalose-6-phosphate phosphatase [Saccharomyces cerevisiae YJM789] gi|207346782|gb|EDZ73177.1| YDR074Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 896 Score = 37.8 bits (86), Expect = 0.49, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 5/92 (5%) Query: 34 LTDDFSKYGRKVIKNL---REEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEII 90 + F G +++K L + KP+ L+ I + LP++++ + GD TDE + + Sbjct: 734 VRPRFVNKG-EIVKRLVWHQHGKPQDMLKGIREKLPKDEMPDFVLCLGDDFTDEDMFRQL 792 Query: 91 RSLEKELQ-IFTDFKNKDAHSRETKETTKSAS 121 ++E + + D KN+ + T SAS Sbjct: 793 NTIETCWKEKYPDQKNQWGNYGFYPVTVGSAS 824 >gi|126338699|ref|XP_001363490.1| PREDICTED: similar to dynamin 1-like, isoform 3 [Monodelphis domestica] Length = 699 Score = 37.8 bits (86), Expect = 0.49, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 36/72 (50%) Query: 9 IRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPRE 68 +RK+ P N + H ++++ Y + DF+ + N+ E++ + R ++ +PR+ Sbjct: 472 LRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELTSTVPRD 531 Query: 69 KIKQDGITNGDQ 80 K+ G GD Sbjct: 532 KVAPAGSGVGDG 543 >gi|126338697|ref|XP_001363409.1| PREDICTED: similar to dynamin 1-like, isoform 2 [Monodelphis domestica] Length = 712 Score = 37.8 bits (86), Expect = 0.50, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 36/72 (50%) Query: 9 IRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPRE 68 +RK+ P N + H ++++ Y + DF+ + N+ E++ + R ++ +PR+ Sbjct: 485 LRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELTSTVPRD 544 Query: 69 KIKQDGITNGDQ 80 K+ G GD Sbjct: 545 KVAPAGSGVGDG 556 >gi|251795846|ref|YP_003010577.1| xylulokinase [Paenibacillus sp. JDR-2] gi|247543472|gb|ACT00491.1| xylulokinase [Paenibacillus sp. JDR-2] Length = 499 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Query: 15 CINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKI-KQD 73 +NRL +E L L Q+ + F + LRE +PE Y ++ +LP++ I + Sbjct: 111 ELNRLFSQE-ELGGLIQNPVAAGFQ---LPSLMWLREHEPESYGKITHVMLPKDYIRFRL 166 Query: 74 GITNGDQLTD 83 G TD Sbjct: 167 TGEIGVDTTD 176 >gi|160898744|ref|YP_001564326.1| AraC family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364328|gb|ABX35941.1| transcriptional regulator, AraC family [Delftia acidovorans SPH-1] Length = 338 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 10/96 (10%) Query: 24 ISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTD 83 ++L D + G +R E I+++LP+ + +++ + + LTD Sbjct: 216 LALHEKLVETELDHLGQAGVG--ARVRHE--------IARLLPQGEPRREDVASLLGLTD 265 Query: 84 EQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKS 119 L +++ + Q D ++ + E +S Sbjct: 266 RTLQRRLQAEDTSYQQLLDETRRELALQYLGEPRRS 301 >gi|126338695|ref|XP_001363325.1| PREDICTED: similar to dynamin 1-like, isoform 1 [Monodelphis domestica] Length = 710 Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 35/66 (53%) Query: 9 IRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPRE 68 +RK+ P N + H ++++ Y + DF+ + N+ E++ + R ++ +PR+ Sbjct: 472 LRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELTSTVPRD 531 Query: 69 KIKQDG 74 K+ Q+ Sbjct: 532 KLIQES 537 >gi|229818674|ref|YP_002880200.1| lipolytic protein G-D-S-L family [Beutenbergia cavernae DSM 12333] gi|229564587|gb|ACQ78438.1| lipolytic protein G-D-S-L family [Beutenbergia cavernae DSM 12333] Length = 340 Score = 35.1 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Query: 38 FSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKEL 97 F+ + ++ +R P+ L +I+ P ++ N T EQ+ E +RS+ L Sbjct: 225 FAAHASAFVERVRAAHPDATLVVIT---PIASPARETTPNAVDFTLEQMREDLRSVVDVL 281 Query: 98 Q 98 Q Sbjct: 282 Q 282 >gi|294674640|ref|YP_003575256.1| ABC transporter permease [Prevotella ruminicola 23] gi|294474339|gb|ADE83728.1| ABC transporter, permease protein [Prevotella ruminicola 23] Length = 806 Score = 34.7 bits (78), Expect = 3.8, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 57 YLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRE 112 Y+RL I P + Q D L ++L + L+ L+ D+ +D +R Sbjct: 241 YVRLAEGITPDDLKAQIAKMRRDNLPADELKKAGVDLDYSLRPLADYHTQDDATRR 296 >gi|242348085|ref|YP_002995646.1| type IV secretion-like conjugative transfer system protein TraH [Aeromonas hydrophila] gi|224831904|gb|ACN67035.1| type IV secretion-like conjugative transfer system protein TraH [Aeromonas hydrophila] Length = 477 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 8/106 (7%) Query: 19 LSHKEISLQYLYQSVLTDDF-----SKYGRKVIKNLREEKPEQYLRLISQILPREKIKQD 73 L HK + S L +DF G+ ++ L+ KP++Y ++I I+ ++ K + Sbjct: 172 LKHKTDASITATTSGLYEDFFGSKQETSGKSPLEELKANKPDEYNKMIGNIVWKQL-KSN 230 Query: 74 GITNGDQLTDEQLCEIIRSLEKELQI--FTDFKNKDAHSRETKETT 117 Q D L E I SL + I + N +T T Sbjct: 231 NANTWFQYGDNTLLEAIMSLTGTVIIGDLVNDPNSTGSGAKTTPLT 276 >gi|224055255|ref|XP_002298446.1| predicted protein [Populus trichocarpa] gi|222845704|gb|EEE83251.1| predicted protein [Populus trichocarpa] Length = 413 Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Query: 38 FSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKEL 97 F+ + R + + +R + + +R + ++ P + KQ + L+ E+I+ L+K++ Sbjct: 342 FATHPRSIAERVRRTRISERMRKLQELFP-DMDKQTSTADKLDLS----IELIKDLQKQV 396 Query: 98 QIFTDFKNKDAHSRETK 114 + D K K S + K Sbjct: 397 KSLADTKAKCTCSSKQK 413 >gi|258624147|ref|ZP_05719097.1| TraH protein [Vibrio mimicus VM603] gi|258583578|gb|EEW08377.1| TraH protein [Vibrio mimicus VM603] Length = 477 Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 8/106 (7%) Query: 19 LSHKEISLQYLYQSVLTDDF-----SKYGRKVIKNLREEKPEQYLRLISQILPREKIKQD 73 L HK + S L +DF G+ ++ L+ KP++Y ++I I+ ++ K + Sbjct: 172 LKHKTDASITATTSGLYEDFFGSKQETSGKSPLEELKANKPDEYNKMIGNIVWKQL-KSN 230 Query: 74 GITNGDQLTDEQLCEIIRSLEKELQI--FTDFKNKDAHSRETKETT 117 Q D L E I SL + I + N +T T Sbjct: 231 NANTWFQYGDNTLLEAIMSLTGTVIIGDLVNDPNSTGTGAKTTPLT 276 >gi|163644905|gb|ABY28342.1| putative pilus assembly and synthesis protein [Vibrio cholerae O139] Length = 472 Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 8/106 (7%) Query: 19 LSHKEISLQYLYQSVLTDDF-----SKYGRKVIKNLREEKPEQYLRLISQILPREKIKQD 73 L HK + S L +DF G+ ++ L+ KP++Y ++I I+ ++ K + Sbjct: 167 LKHKTDASITATTSGLYEDFFGSKQETSGKSPLEELKANKPDEYNKMIGNIVWKQL-KSN 225 Query: 74 GITNGDQLTDEQLCEIIRSLEKELQI--FTDFKNKDAHSRETKETT 117 Q D L E I SL + I + N +T T Sbjct: 226 NANTWFQYGDNTLLEAIMSLTGTVIIGDLVNDPNSTGTGAKTTPLT 271 >gi|134044544|ref|YP_001101870.1| type IV conjugative transfer system protein TraH [Yersinia ruckeri] gi|133904907|gb|ABO40924.1| type IV conjugative transfer system protein TraH [Yersinia ruckeri] Length = 477 Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 8/106 (7%) Query: 19 LSHKEISLQYLYQSVLTDDF-----SKYGRKVIKNLREEKPEQYLRLISQILPREKIKQD 73 L HK + S L +DF G+ ++ L+ KP++Y ++I I+ ++ K + Sbjct: 172 LKHKTDASITATTSGLYEDFFGSKQETSGKSPLEELKANKPDEYNKMIGNIVWKQL-KSN 230 Query: 74 GITNGDQLTDEQLCEIIRSLEKELQI--FTDFKNKDAHSRETKETT 117 Q D L E I SL + I + N +T T Sbjct: 231 NANTWFQYGDNTLLEAIMSLTGTVIIGDLVNDPNSTGTGAKTTPLT 276 >gi|118602018|ref|YP_908718.1| putative pilus assembly protein [Photobacterium damselae subsp. piscicida] gi|118614756|ref|YP_908539.1| putative pilus assembly protein [Photobacterium damselae subsp. piscicida] gi|134044926|ref|YP_001102272.1| type IV conjugative transfer system protein TraH [Yersinia pestis biovar Orientalis str. IP275] gi|134047117|ref|YP_001102060.1| type IV conjugative transfer system protein TraH [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|165938008|ref|ZP_02226568.1| TraH family protein [Yersinia pestis biovar Orientalis str. IP275] gi|229516085|ref|ZP_04405535.1| IncF plasmid conjugative transfer pilus assembly protein TraH [Vibrio cholerae RC9] gi|237640352|ref|YP_002891207.1| TraH [Escherichia coli] gi|237810087|ref|YP_002894527.1| TraH [Escherichia coli] gi|237810267|ref|YP_002894706.1| TraH [Salmonella enterica] gi|300927188|ref|ZP_07142925.1| TraH protein [Escherichia coli MS 182-1] gi|309796479|ref|ZP_07690887.1| TraH protein [Escherichia coli MS 145-7] gi|118596847|dbj|BAF38151.1| putative pilus assembly protein [Photobacterium damselae subsp. piscicida] gi|118597027|dbj|BAF38330.1| putative pilus assembly protein [Photobacterium damselae subsp. piscicida] gi|133905036|gb|ABO41051.1| type IV conjugative transfer system protein TraH [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|133905460|gb|ABO42222.1| type IV conjugative transfer system protein TraH [Yersinia pestis biovar Orientalis str. IP275] gi|165914031|gb|EDR32648.1| TraH family protein [Yersinia pestis biovar Orientalis str. IP275] gi|229346865|gb|EEO11833.1| IncF plasmid conjugative transfer pilus assembly protein TraH [Vibrio cholerae RC9] gi|229561571|gb|ACQ77774.1| TraH [Escherichia coli] gi|229561751|gb|ACQ77953.1| TraH [Salmonella enterica] gi|229561943|gb|ACQ78144.1| TraH [Escherichia coli] gi|300416855|gb|EFK00166.1| TraH protein [Escherichia coli MS 182-1] gi|308119984|gb|EFO57246.1| TraH protein [Escherichia coli MS 145-7] gi|324007614|gb|EGB76833.1| TraH protein [Escherichia coli MS 57-2] gi|327536624|gb|AEA95457.1| IncF plasmid conjugative transfer pilus assembly protein TraH [Salmonella enterica subsp. enterica serovar Dublin] gi|332144547|dbj|BAK19767.1| type IV conjugative transfer system protein [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 477 Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 8/106 (7%) Query: 19 LSHKEISLQYLYQSVLTDDF-----SKYGRKVIKNLREEKPEQYLRLISQILPREKIKQD 73 L HK + S L +DF G+ ++ L+ KP++Y ++I I+ ++ K + Sbjct: 172 LKHKTDASITATTSGLYEDFFGSKQETSGKSPLEELKANKPDEYNKMIGNIVWKQL-KSN 230 Query: 74 GITNGDQLTDEQLCEIIRSLEKELQI--FTDFKNKDAHSRETKETT 117 Q D L E I SL + I + N +T T Sbjct: 231 NANTWFQYGDNTLLEAIMSLTGTVIIGDLVNDPNSTGTGAKTTPLT 276 >gi|291392441|ref|XP_002712725.1| PREDICTED: dynamin 1-like [Oryctolagus cuniculus] Length = 712 Score = 33.9 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%) Query: 9 IRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPRE 68 +RK+ P N + H ++++ Y + DF+ + N+ E++ + R + + R+ Sbjct: 485 LRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELPSAVSRD 544 Query: 69 KIKQDGITNGD 79 K+ G GD Sbjct: 545 KVATGGGGVGD 555 >gi|330005178|ref|ZP_08305140.1| ATP synthase F1, delta subunit [Klebsiella sp. MS 92-3] gi|328536384|gb|EGF62743.1| ATP synthase F1, delta subunit [Klebsiella sp. MS 92-3] Length = 177 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Query: 25 SLQYLYQSVLTDDFSKYGRKVIKNLREEK-----PEQYLRLISQILPREKIKQDGITNGD 79 +L + ++ + + G+ +IK + E P+ + I E I + + + + Sbjct: 56 TLSEAFIAICGEQLDENGQNLIKVMAENNRLKVLPDVLEQFIHLRAASEAIAEVEVISAN 115 Query: 80 QLTDEQLCEIIRSLEKEL 97 QL+DEQL I+ ++EK L Sbjct: 116 QLSDEQLARIVSAMEKRL 133 >gi|206580485|ref|YP_002241284.1| ATP synthase F1, delta subunit [Klebsiella pneumoniae 342] gi|288937923|ref|YP_003441982.1| ATP synthase F1 subunit delta [Klebsiella variicola At-22] gi|290511663|ref|ZP_06551031.1| ATP synthase F1, delta subunit [Klebsiella sp. 1_1_55] gi|229554327|sp|B5XZM1|ATPD_KLEP3 RecName: Full=ATP synthase subunit delta; AltName: Full=ATP synthase F(1) sector subunit delta; AltName: Full=F-type ATPase subunit delta; Short=F-ATPase subunit delta gi|206569543|gb|ACI11319.1| ATP synthase F1, delta subunit [Klebsiella pneumoniae 342] gi|288892632|gb|ADC60950.1| ATP synthase F1, delta subunit [Klebsiella variicola At-22] gi|289775453|gb|EFD83453.1| ATP synthase F1, delta subunit [Klebsiella sp. 1_1_55] Length = 177 Score = 33.9 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Query: 25 SLQYLYQSVLTDDFSKYGRKVIKNLREEK-----PEQYLRLISQILPREKIKQDGITNGD 79 +L + ++ + + G+ +IK + E P+ + I E I + + + + Sbjct: 56 TLSEAFIAICGEQLDENGQNLIKVMAENNRLKVLPDVLEQFIHLRAASEAIAEVEVISAN 115 Query: 80 QLTDEQLCEIIRSLEKEL 97 QL+DEQL I+ ++EK L Sbjct: 116 QLSDEQLARIVSAMEKRL 133 >gi|152972644|ref|YP_001337790.1| F0F1 ATP synthase subunit delta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238897242|ref|YP_002921990.1| F0F1 ATP synthase subunit delta [Klebsiella pneumoniae NTUH-K2044] gi|262040360|ref|ZP_06013606.1| ATP synthase F1 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|229554328|sp|A6TG39|ATPD_KLEP7 RecName: Full=ATP synthase subunit delta; AltName: Full=ATP synthase F(1) sector subunit delta; AltName: Full=F-type ATPase subunit delta; Short=F-ATPase subunit delta gi|150957493|gb|ABR79523.1| ATP synthase subunit D [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549572|dbj|BAH65923.1| ATP synthase subunit D [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259042301|gb|EEW43326.1| ATP synthase F1 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 177 Score = 33.9 bits (76), Expect = 8.1, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Query: 25 SLQYLYQSVLTDDFSKYGRKVIKNLREEK-----PEQYLRLISQILPREKIKQDGITNGD 79 +L + ++ + + G+ +IK + E P+ + I E I + + + + Sbjct: 56 TLSEAFIAICGEQLDENGQNLIKVMAENNRLKVLPDVLEQFIHLRAASEAIAEVEVISAN 115 Query: 80 QLTDEQLCEIIRSLEKEL 97 QL+DEQL I+ ++EK L Sbjct: 116 QLSDEQLARIVSAMEKRL 133 >gi|224106043|ref|XP_002314023.1| predicted protein [Populus trichocarpa] gi|222850431|gb|EEE87978.1| predicted protein [Populus trichocarpa] Length = 421 Score = 33.6 bits (75), Expect = 8.5, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 5/77 (6%) Query: 38 FSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKEL 97 F+ + R + + +R + + +R + ++ P D L + E I+ L+K++ Sbjct: 343 FATHPRSIAERVRRTRISERMRKLQELFP---NMDKQTNTADML--DLAVEHIKDLQKQV 397 Query: 98 QIFTDFKNKDAHSRETK 114 + TD K K S + K Sbjct: 398 KTLTDTKAKCTCSSKQK 414 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.310 0.129 0.324 Lambda K H 0.267 0.0395 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,872,421,692 Number of Sequences: 14124377 Number of extensions: 62396070 Number of successful extensions: 172441 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 76 Number of HSP's that attempted gapping in prelim test: 172394 Number of HSP's gapped (non-prelim): 107 length of query: 122 length of database: 4,842,793,630 effective HSP length: 89 effective length of query: 33 effective length of database: 3,585,724,077 effective search space: 118328894541 effective search space used: 118328894541 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 75 (33.6 bits)