RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781146|ref|YP_003065559.1| hypothetical protein
CLIBASIA_05265 [Candidatus Liberibacter asiaticus str. psy62]
         (122 letters)



>3f9m_A Glucokinase; hexokinase IV, alternative splicing, ATP-
          binding, diabetes mellitus, disease mutation,
          glycolysis, nucleotide-binding, polymorphism; HET: GLC
          MRK; 1.50A {Homo sapiens} PDB: 1v4s_A* 3a0i_X* 3fr0_A*
          3goi_A* 3imx_A* 3h1v_X* 1v4t_A* (A:1-71,A:210-447)
          Length = 309

 Score = 27.2 bits (60), Expect = 0.91
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 55 EQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKEL 97
            +  L  Q + +EK++Q  I    QL +E L +++R ++KE+
Sbjct: 6  HHHENLYFQGMKKEKVEQ--ILAEFQLQEEDLKKVMRRMQKEM 46


>2pff_A Fatty acid synthase subunit alpha,
          3-oxoacyl-[acyl-carrier-; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 26.8 bits (59), Expect = 1.0
 Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 24/78 (30%)

Query: 2  SPLTLLPI--RKKYPCIN-RLSH----KEISLQYLYQSVLTDDFSKYGRKVIKNLREEKP 54
          SP   L +  RK+   +  R +      E  L+ L                   +  E  
Sbjct: 21 SPN--LNMKYRKR--QLVTREAQIKDWVENELEALKLEAEE-------------IPSEDQ 63

Query: 55 EQYLRLISQILPREKIKQ 72
           ++L   ++ +  E   Q
Sbjct: 64 NEFLLERTREIHNEAESQ 81


>1yku_A Hypothetical protein PXO2-61; globin fold, unknown
          function; 1.49A {Bacillus anthracis} (A:)
          Length = 136

 Score = 26.6 bits (59), Expect = 1.2
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 11/74 (14%)

Query: 11 KKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKN-----------LREEKPEQYLR 59
          K   C      +E  +    + V+  +   Y  ++IKN           L+EE   Q + 
Sbjct: 5  KCLLCRYLKERQEKFISDWKKKVIIRERDPYKEEIIKNGEHLLSAFIMYLKEEISLQEIE 64

Query: 60 LISQILPREKIKQD 73
          + S+ + RE+I   
Sbjct: 65 ITSKKIARERIDAK 78


>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis,
           amino-acid biosynthesis, homoserine transacetylase,
           homoserine transsuccinylase; 2.00A {Bacillus cereus}
           PDB: 2ghr_A (A:)
          Length = 301

 Score = 26.4 bits (57), Expect = 1.3
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 15  CINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDG 74
            +     +++      +        +Y R   K L  + P+ Y +      P EK     
Sbjct: 221 LVIGQEGRQVFALGHSEYSCDTLKQEYERDRDKGLNIDVPKNYFK---HDNPNEKPLVRW 277

Query: 75  ITNGDQL 81
            ++G+ L
Sbjct: 278 RSHGNLL 284


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 25.9 bits (57), Expect = 2.2
 Identities = 5/18 (27%), Positives = 10/18 (55%), Gaps = 2/18 (11%)

Query: 78 GDQLTDEQLCEII--RSL 93
           D ++ E L E++  R +
Sbjct: 3  ADVMSIESLVEVVFYRGM 20


>1cza_N Hexokinase type I; structurally homologous domains; HET:
          GLC G6P ADP; 1.90A {Homo sapiens} (N:478-519,N:658-895)
          Length = 280

 Score = 25.7 bits (56), Expect = 2.6
 Identities = 5/18 (27%), Positives = 10/18 (55%)

Query: 80 QLTDEQLCEIIRSLEKEL 97
           LT + L E+ + +  E+
Sbjct: 1  HLTKDMLLEVKKRMRAEM 18


>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR
           2TH; 1.60A {Oryctolagus cuniculus} (A:480-799)
          Length = 320

 Score = 25.3 bits (54), Expect = 2.8
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 13/54 (24%)

Query: 67  REKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA 120
            E+I ++ I++ DQL             ++L  + D +       + K+  K  
Sbjct: 14  AERIGEEYISDLDQL-------------RKLLSYVDDEAFIRDVAKVKQENKLK 54


>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase,
           assemble; 2.50A {Escherichia coli} (A:1-50,A:179-235)
          Length = 107

 Score = 25.4 bits (56), Expect = 3.0
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 60  LISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFK 104
            + Q    +K+  +  TNG    +E +      L ++L+ F D +
Sbjct: 63  RVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR 107


>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open
           conformation, transferase; HET: TPO; 2.80A
           {Saccharomyces cerevisiae} (A:88-318)
          Length = 231

 Score = 24.9 bits (52), Expect = 3.6
 Identities = 7/45 (15%), Positives = 18/45 (40%)

Query: 59  RLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDF 103
            + +   P  +  Q   +  D+  +E +   ++  +    +F DF
Sbjct: 187 NIETPYEPPIQQGQGDTSQFDKYPEEDINYGVQGEDPYADLFRDF 231


>3lma_A Stage V sporulation protein AD (spovad); NESG, structural
          genomics, PSI-2, protein structure initiative; 1.99A
          {Bacillus licheniformis} (A:1-13,A:178-347)
          Length = 183

 Score = 24.7 bits (54), Expect = 4.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 30 YQSVLTDDFSKYGRKVIKNLREEK 53
          Y  +LT D S  G  ++K+L +E+
Sbjct: 63 YDLILTGDLSGVGSPILKDLLKEE 86


>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis,
           F1-ATPase, spectroscopy; NMR {Escherichia coli} (A:)
          Length = 134

 Score = 24.4 bits (53), Expect = 5.2
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 32  SVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGD-----QLTDEQL 86
           +V  +   + G+ +I+ + E      L  + +     +   +     D      L+++QL
Sbjct: 62  AVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQL 121

Query: 87  CEIIRSLEKEL 97
            +I  ++EK L
Sbjct: 122 AKISAAMEKRL 132


>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A
          {Bacillus subtilis} (A:)
          Length = 81

 Score = 24.6 bits (54), Expect = 5.4
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 46 IKNLREEKPEQY-LRLI--SQILPREKIKQD-GITNGDQL 81
           +++     E + +R++   ++   E    D GITNGD+L
Sbjct: 39 AQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRL 78


>1cza_N Hexokinase type I; structurally homologous domains; HET:
          GLC G6P ADP; 1.90A {Homo sapiens} (N:1-72,N:210-447)
          Length = 310

 Score = 24.5 bits (53), Expect = 5.4
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 67 REKIKQDGITNGDQLTDEQLCEIIRSLEKELQ 98
           +KI +       +L+DE L +I+    KE++
Sbjct: 19 VKKIDK--YLYAMRLSDETLIDIMTRFRKEMK 48


>1ob8_A Holliday-junction resolvase; hydrolase, enzyme, homologous
           recombination, holliday junction resolving enzyme,
           nuclease, archaea; 1.8A {Sulfolobus solfataricus} (A:)
          Length = 135

 Score = 23.7 bits (51), Expect = 8.4
 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 36  DDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEK 95
           ++  K     ++ L +      ++ +  I     IK   +     L  E+  +II +++ 
Sbjct: 58  ENKVKVKEHQVRKLLDFLSMFTMKGVPLI----AIKFKQVHEWRVLVPEKAEDIIVTIDN 113

Query: 96  ELQ 98
            + 
Sbjct: 114 SIP 116


>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase,
          oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces
          coelicolor} (A:163-245)
          Length = 83

 Score = 23.6 bits (51), Expect = 9.6
 Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 36 DDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSL 93
              +   ++I   R    +    + S ++      +D   +GD+L+ E+L + +  +
Sbjct: 27 ARLYEVLDQLIAAKRATPGDD---MTSLLIAA----RDDEGDGDRLSPEELRDTLLLM 77


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.315    0.132    0.362 

Gapped
Lambda     K      H
   0.267   0.0684    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 835,937
Number of extensions: 35681
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 35
Length of query: 122
Length of database: 4,956,049
Length adjustment: 73
Effective length of query: 49
Effective length of database: 2,488,284
Effective search space: 121925916
Effective search space used: 121925916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.1 bits)