RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781146|ref|YP_003065559.1| hypothetical protein
CLIBASIA_05265 [Candidatus Liberibacter asiaticus str. psy62]
         (122 letters)



>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA
           {Amycolatopsis orientalis [TaxId: 31958]}
          Length = 391

 Score = 28.9 bits (63), Expect = 0.15
 Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 18  RLSHKEISLQYLYQSV---LTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREK 69
            +     ++  L  ++   L  +       V   +R +      +L+   +  EK
Sbjct: 337 AVDGPVPTIDSLSAALDTALAPEIRARATTVADTIRADGTTVAAQLLFDAVSLEK 391


>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase)
          {Lactobacillus plantarum [TaxId: 1590]}
          Length = 266

 Score = 24.9 bits (54), Expect = 1.9
 Identities = 7/28 (25%), Positives = 11/28 (39%)

Query: 25 SLQYLYQSVLTDDFSKYGRKVIKNLREE 52
           + YL Q   +    KY   ++    EE
Sbjct: 39 MMSYLSQGWASTGAEKYKDLLLDTGTEE 66


>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
           protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 529

 Score = 24.9 bits (54), Expect = 2.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)

Query: 7   LPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLRE 51
           LP+R   P +   S K I LQ +Y+     D +  G  V K L+ 
Sbjct: 318 LPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQS 362


>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus
          furiosus [TaxId: 2261]}
          Length = 116

 Score = 24.6 bits (53), Expect = 2.4
 Identities = 5/26 (19%), Positives = 14/26 (53%), Gaps = 4/26 (15%)

Query: 30 YQSV----LTDDFSKYGRKVIKNLRE 51
          ++ +     + + +KYG  ++K+L  
Sbjct: 1  FRKIALVGASKNPAKYGNIILKDLLS 26


>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA,
          N-terminal domain {Pyrococcus horikoshii [TaxId:
          53953]}
          Length = 129

 Score = 24.6 bits (53), Expect = 2.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 35 TDDFSKYGRKVIKNLREEKPEQ 56
          ++D  K G +V KNL+E K  +
Sbjct: 17 SNDPKKLGYEVFKNLKEYKKGK 38


>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis,
           Ermc' [TaxId: 1423]}
          Length = 235

 Score = 24.4 bits (52), Expect = 3.2
 Identities = 6/36 (16%), Positives = 16/36 (44%)

Query: 60  LISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEK 95
           + ++      +K  GI + + ++ EQ   +  S + 
Sbjct: 197 IFTKNQFNNSLKHAGIDDLNNISFEQFLSLFNSYKL 232


>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 366

 Score = 23.8 bits (50), Expect = 4.8
 Identities = 7/48 (14%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 48  NLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEK 95
            L++   E  L++          + + I N   +T + + + I + ++
Sbjct: 315 KLKDASREDILKVAKAATA----EGETIHNAFNVTADDVADAIFAADQ 358


>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 71

 Score = 23.6 bits (51), Expect = 5.1
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 4/39 (10%)

Query: 33 VLTDDFS--KYGRKVIKNLREEKPEQYLRLISQILPREK 69
          +L D +   KYG+KV+K      P  Y +  +      K
Sbjct: 9  LLDDGYRWRKYGQKVVKG--NPYPRSYYKCTTPGCGVRK 45


>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 291

 Score = 23.0 bits (49), Expect = 7.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 83  DEQLCEIIRSLEKELQIFTDF 103
           +E +C +I+    +LQI TDF
Sbjct: 24  EEIICGLIKGGAAKLQIITDF 44


>d1jlna_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus),
          ptp-sl/br7 [TaxId: 10090]}
          Length = 297

 Score = 22.9 bits (48), Expect = 9.2
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 50 REEKPEQYLRLISQILPREKIKQDGITNGDQLTDE 84
          RE+   +YL+  S++L R +++ D + +   L  E
Sbjct: 4  REKVAMEYLQSASRVLTRSQLR-DVVASSHLLQSE 37


>d1seda_ a.219.1.1 (A:) Hypothetical protein YhaI {Bacillus
          subtilis [TaxId: 1423]}
          Length = 112

 Score = 22.8 bits (49), Expect = 9.5
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 18 RLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPR-EKIKQDGIT 76
          R+   E  +Q L ++V  D +  Y   + K L +E+ E  +R+  ++       K  G  
Sbjct: 6  RIERLEYYIQLLVKTVDMDRYPFYALLIDKGLSKEEGEAVMRICDELSEELATQKAQGFV 65

Query: 77 NGDQLTDE 84
            D+L   
Sbjct: 66 TFDKLLAL 73


>d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate
          reductase-thymidylate synthase, TS domain {Malaria
          parasite (Plasmodium falciparum) [TaxId: 5833]}
          Length = 326

 Score = 22.7 bits (48), Expect = 9.7
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 32 SVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQD 73
          S+  +DF  Y     K   E    QYL +I  I+     + D
Sbjct: 24 SIHPNDFQIYNSLKYKYHPEY---QYLNIIYDIMMNGNKQSD 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.362 

Gapped
Lambda     K      H
   0.267   0.0506    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 424,032
Number of extensions: 18976
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 26
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.4 bits)