BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781146|ref|YP_003065559.1| hypothetical protein
CLIBASIA_05265 [Candidatus Liberibacter asiaticus str. psy62]
         (122 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781146|ref|YP_003065559.1| hypothetical protein CLIBASIA_05265 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 122

 Score =  247 bits (630), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 122/122 (100%), Positives = 122/122 (100%)

Query: 1   MSPLTLLPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRL 60
           MSPLTLLPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRL
Sbjct: 1   MSPLTLLPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRL 60

Query: 61  ISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA 120
           ISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA
Sbjct: 61  ISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA 120

Query: 121 SS 122
           SS
Sbjct: 121 SS 122


>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1775

 Score = 23.1 bits (48), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 45  VIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSL 93
            +KN+RE     + R + QI        D + NG  + D QL + I+ L
Sbjct: 942 ALKNIRE-----WYRKVHQIWKDNSSLDDALINGFLMLDSQLFKRIQKL 985


>gi|254780898|ref|YP_003065311.1| hypothetical protein CLIBASIA_03975 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 207

 Score = 21.6 bits (44), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 41 YGRKVIKNLREEKPEQY 57
          YG K I NLR + PE +
Sbjct: 70 YGIKSILNLRGKLPESW 86


>gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 781

 Score = 21.2 bits (43), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 60  LISQILPREKIKQDGITNGDQLTDEQLCEIIRS 92
           LI  ++ R+ I     +  + L D+QL  I+RS
Sbjct: 106 LIIDLIERKIINHLFFSGNNNLKDDQLKMIVRS 138


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.132    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,638
Number of Sequences: 1233
Number of extensions: 2910
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 122
length of database: 328,796
effective HSP length: 64
effective length of query: 58
effective length of database: 249,884
effective search space: 14493272
effective search space used: 14493272
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 33 (17.3 bits)