HHsearch alignment for GI: 254781147 and conserved domain: COG2973
>COG2973 TrpR Trp operon repressor [Transcription].
Probab=90.81 E-value=0.95 Score=25.27 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999999--98399499999986342999988755899
Q gi|254781147|r 18 ERMIFVNNFRNIR--KEAKLTQKEIRNRTGFAQSWISELETGKS 59 (83)
Q Consensus 18 ~~~~~g~~ir~~R--~~~gltq~ela~~~gis~~~is~iE~G~~ 59 (83)
T Consensus 42 EReal~~Rv~Iv~eLL~ge~sQREi~~~LgvsiAtITRGSN~LK 85 (103)
T COG2973 42 EREALGTRVRIVEELLRGELSQREIAQKLGVSIATITRGSNSLK 85 (103)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCHHHHC
T ss_conf 89999999999999995635399999985862565504444423