HHsearch alignment for GI: 254781147 and conserved domain: COG3423
>COG3423 Nlp Predicted transcriptional regulator [Transcription].
Probab=94.64 E-value=0.13 Score=30.45 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=44.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 9999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
T Consensus 11 adI~A~Lkk~G~Sl~~LS~~agls~~tL~n~L~r-p~pkgE--riIA~algv~P~eIW 65 (82)
T COG3423 11 ADIIAALKKKGTSLAALSREAGLSSSTLANALDR-PWPKGE--RIIADALGVPPEEIW 65 (82)
T ss_pred HHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCC-CCCHHH--HHHHHHHCCCHHHHC
T ss_conf 9999999985642999998808787899998747-887188--999999589888818