HHsearch alignment for GI: 254781147 and conserved domain: PRK08583

>PRK08583 RNA polymerase sigma factor SigB; Validated.

Probab=90.90  E-value=0.3  Score=28.26  Aligned_cols=32  Identities=28%  Similarity=0.313  Sum_probs=27.7

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999983994999999863429999887558
Q gi|254781147|r   26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG   57 (83)
Q Consensus        26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G   57 (83)
T Consensus       213 Ii~lry~~~~t~~eIa~~lGiS~eRVrQi~~~  244 (257)
T PRK08583        213 IIQCTFIENLSQKETGERLGISQMHVSRLQRQ  244 (257)
T ss_pred             HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999579999999999989699999999999