HHsearch alignment for GI: 254781147 and conserved domain: PRK10344
>PRK10344 DNA-binding transcriptional regulator Nlp; Provisional.
Probab=93.69 E-value=0.28 Score=28.43 Aligned_cols=55 Identities=15% Similarity=0.194 Sum_probs=43.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 9999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
T Consensus 11 ADIiAAL~KrG~sLa~Lsr~aGls~sTL~nAL~r-pwPKgE--~iIA~aLGv~P~eIW 65 (90)
T PRK10344 11 ADIIAGLRKKGTSMAAESRRNGLSSSTLANALSR-PWPKGE--MIIAKALGTDPWVIW 65 (90)
T ss_pred HHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCC-CCCHHH--HHHHHHHCCCHHHCC
T ss_conf 9999999986886999999909986889998748-995679--999999787988809