HHsearch alignment for GI: 254781147 and conserved domain: PRK11041
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional.
Probab=95.74 E-value=0.019 Score=35.30 Aligned_cols=44 Identities=9% Similarity=0.034 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH---HHHHHCCCHH
Q ss_conf 9499999986342999988755899944899999---9999289999
Q gi|254781147|r 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMII---LAHTLDTPLW 78 (83)
Q Consensus 35 ltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~---la~al~i~~~ 78 (83)
T Consensus 10 aTikDIA~~aGVS~sTVSrvLn~~~~Vs~~Tr~rV~~aa~eLgY~pn 56 (341)
T PRK11041 10 ATMKDVALKAGVSTATVSRALMNPEKVSQSTRNRVEQAVLEVGYSPQ 56 (341)
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 88999999979799999999789899999999999999998199838