HHsearch alignment for GI: 254781147 and conserved domain: TIGR02147
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147; InterPro: IPR011873 This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterised..
Probab=90.70 E-value=0.16 Score=29.94 Aligned_cols=46 Identities=15% Similarity=0.358 Sum_probs=41.6
Q ss_pred HHCCCCHHHHHHHHHHHH--HHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 983994999999863429--9998875589994489999999992899
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQ--SWISELETGKSTINIDNMIILAHTLDTP 76 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~--~~is~iE~G~~~~~~~~l~~la~al~i~ 76 (83)
T Consensus 24 ~~~~FS~R~fa~KaGfsS~r~~~~~~~~GK~~Lt~~~i~k~~~~l~Ld 71 (281)
T TIGR02147 24 TDRAFSWRSFAEKAGFSSKRSYLKRIIKGKKNLTKRMIPKFAEALGLD 71 (281)
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 154330899998648898777888998666753000357666552467