HHsearch alignment for GI: 254781147 and conserved domain: TIGR02607
>TIGR02607 antidote_HigA addiction module antidote protein, HigA family; InterPro: IPR013430 Proteins in this entry form a distinct group of helix-turn-helix proteins, which are strictly bacterial and nearly always shorter than 110 amino acids. They include the characterised member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is encoded by the upstream member of the gene pair.; GO: 0003677 DNA binding.
Probab=98.28 E-value=1.6e-06 Score=59.54 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=55.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 8888689899999999999999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 6 ~~~p~~~~~~~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
T Consensus 2 ~~P~HPGE~L~----------eEfL~PLg~s~~~LA~~LgVsr~~~sriv~~~~~iT~dmALRL~~~lG~sp~~WL 67 (81)
T TIGR02607 2 RNPAHPGEILL----------EEFLEPLGLSVRALAKALGVSRSTLSRIVNGRRGITADMALRLAKALGTSPEFWL 67 (81)
T ss_pred CCCCCCCCHHH----------HHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 89778841328----------7752104706899998709997888888744899888899999997389876899