HHsearch alignment for GI: 254781147 and conserved domain: pfam01371

>pfam01371 Trp_repressor Trp repressor protein. This protein binds to tryptophan and represses transcription of the Trp operon.
Probab=94.26  E-value=0.098  Score=31.12  Aligned_cols=40  Identities=23%  Similarity=0.294  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999--98399499999986342999988755
Q gi|254781147|r   17 RERMIFVNNFRNIR--KEAKLTQKEIRNRTGFAQSWISELET   56 (83)
Q Consensus        17 ~~~~~~g~~ir~~R--~~~gltq~ela~~~gis~~~is~iE~   56 (83)
T Consensus        30 ~E~~ala~R~~va~~LL~~~~syreI~~~~g~S~aTItRvsr   71 (88)
T pfam01371        30 DEREALAQRLRIAKELLRGELSQREIAQELGASIATITRGSN   71 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999999999999997899899999985985231478899