HHsearch alignment for GI: 254781147 and conserved domain: pfam04814
>pfam04814 HNF-1_N Hepatocyte nuclear factor 1 (HNF-1), N terminus. This family consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerization sequence and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3).
Probab=94.25 E-value=0.067 Score=32.09 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999839949999998634299998875589
Q gi|254781147|r 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 (83)
Q Consensus 19 ~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~ 58 (83)
T Consensus 113 ~~~v~~~Ik~~m~~h~ipQ~~vv~~TGlnQS~lSq~LnkG 152 (177)
T pfam04814 113 PWRVAKMIKSYMQQHNIPQREVVDATGLNQSHLSQHLNKG 152 (177)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 4999999999998768846678761065599999999668