HHsearch alignment for GI: 254781147 and conserved domain: smart00352
>smart00352 POU Found in Pit-Oct-Unc transcription factors.
Probab=97.27 E-value=0.0014 Score=42.06 Aligned_cols=57 Identities=28% Similarity=0.397 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 999999999999999983994999999863------42999988755899944899999999928
Q gi|254781147|r 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTG------FAQSWISELETGKSTINIDNMIILAHTLD 74 (83)
Q Consensus 16 ~~~~~~~g~~ir~~R~~~gltq~ela~~~g------is~~~is~iE~G~~~~~~~~l~~la~al~ 74 (83)
T Consensus 6 l~Ele~Fa~~fk~rRi~LG~TQ~dVG~aL~~l~g~~~SQttIcRFE~--l~LS~kn~~kLkPiL~ 68 (75)
T smart00352 6 PRELEAFAKTFKQRRIKLGFTQADVGLALGALYGPDFSQTTICRFEA--LQLSFKNMCKLKPLLE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH--CCCCHHHHHHHHHHHH
T ss_conf 99999999999998987377599999999986186431468889886--0547988998899999