HHsearch alignment for GI: 254781147 and conserved domain: smart00530
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=99.31 E-value=3.9e-12 Score=92.84 Aligned_cols=56 Identities=30% Similarity=0.502 Sum_probs=54.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 99999998399499999986342999988755899944899999999928999996
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l 80 (83)
T Consensus 1 rlr~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~~~~~~l 56 (56)
T smart00530 1 RLKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKPSLETLKKLAKALGVSLDEL 56 (56)
T ss_pred CHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHC
T ss_conf 98999977299999999998959999999997998999999999999988889879