HHsearch results for GI: 254781147 and protein with PDBid: 3d1n_I
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=91.85 E-value=0.69 Score=24.81 Aligned_cols=52 Identities=27% Similarity=0.217 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 9999999999999999839949999998634------29999887558999448999999
Q gi|254781147|r 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGF------AQSWISELETGKSTINIDNMIIL 69 (83)
Q Consensus 16 ~~~~~~~g~~ir~~R~~~gltq~ela~~~gi------s~~~is~iE~G~~~~~~~~l~~l 69 (83)
+.+-+.|+..++..|...|+||.+++..+|. ++++++..|+-.. +.....++
T Consensus 3 l~ele~f~~~fk~rRi~Lg~SQ~~V~~al~~~~~~~~sq~~i~~fe~~~l--s~kn~~kl 60 (151)
T 3d1n_I 3 MEEIREFAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDI--TPKSAQKL 60 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCS--CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHC--CHHHHHHH
T ss_conf 99999999999987777178786699998664676566021468999765--76259881