Query gi|254781147|ref|YP_003065560.1| transcriptional regulator [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 83
No_of_seqs 109 out of 8897
Neff 7.1
Searched_HMMs 23785
Date Wed Jun 1 04:05:58 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781147.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bnm_A Epoxidase; oxidoreducta 99.6 3.6E-16 1.5E-20 115.5 7.4 64 20-83 9-73 (198)
2 1y9q_A Transcriptional regulat 99.6 1.1E-15 4.7E-20 112.6 7.6 70 11-82 3-72 (192)
3 3ivp_A Putative transposon-rel 99.6 3.9E-15 1.6E-19 109.4 7.9 64 20-83 11-74 (126)
4 2ewt_A BLDD, putative DNA-bind 99.6 3.5E-15 1.5E-19 109.6 7.4 64 19-82 6-71 (71)
5 2b5a_A C.BCLI; helix-turn-heli 99.6 1.1E-14 4.5E-19 106.8 9.3 66 17-82 6-71 (77)
6 3f52_A CLP gene regulator (CLG 99.6 3.8E-15 1.6E-19 109.5 6.7 64 19-82 26-89 (117)
7 3op9_A PLI0006 protein; struct 99.6 7.8E-15 3.3E-19 107.6 7.6 64 19-82 7-70 (114)
8 3b7h_A Prophage LP1 protein 11 99.6 1.7E-14 7.1E-19 105.6 9.3 65 18-82 4-69 (78)
9 2kpj_A SOS-response transcript 99.6 9.3E-15 3.9E-19 107.2 7.9 65 18-82 6-70 (94)
10 1y7y_A C.AHDI; helix-turn-heli 99.5 9.5E-15 4E-19 107.1 7.7 63 19-81 11-73 (74)
11 3g5g_A Regulatory protein; tra 99.5 2.5E-14 1E-18 104.6 8.6 63 20-82 27-89 (99)
12 3clc_A Regulatory protein; pro 99.5 3.6E-14 1.5E-18 103.7 8.7 63 20-82 10-72 (82)
13 1b0n_A Protein (SINR protein); 99.5 1.7E-14 7.1E-19 105.6 6.8 62 21-82 1-63 (111)
14 1lmb_3 Protein (lambda repress 99.5 5.6E-14 2.3E-18 102.5 8.5 72 11-82 7-78 (92)
15 3f6w_A XRE-family like protein 99.5 6.9E-14 2.9E-18 102.0 8.8 64 19-82 12-75 (83)
16 3kxa_A NGO0477 protein, putati 99.5 1.5E-14 6.2E-19 106.0 5.3 64 19-82 66-129 (141)
17 2ofy_A Putative XRE-family tra 99.5 1.3E-13 5.5E-18 100.3 10.1 69 12-82 7-76 (86)
18 2r1j_L Repressor protein C2; p 99.5 6.9E-14 2.9E-18 102.0 7.9 62 21-82 5-66 (68)
19 3kz3_A Repressor protein CI; f 99.5 9.9E-14 4.2E-18 101.0 8.3 72 11-82 2-73 (80)
20 2a6c_A Helix-turn-helix motif; 99.5 2.6E-14 1.1E-18 104.5 5.1 74 10-83 7-81 (83)
21 1utx_A CYLR2; DNA-binding prot 99.5 6.1E-14 2.6E-18 102.3 7.0 60 23-82 3-62 (66)
22 1adr_A P22 C2 repressor; trans 99.5 9.3E-14 3.9E-18 101.2 7.9 62 21-82 5-66 (76)
23 2p5t_A Putative transcriptiona 99.5 3.4E-15 1.4E-19 109.7 0.0 62 21-82 1-62 (158)
24 3mlf_A Transcriptional regulat 99.5 1.8E-14 7.5E-19 105.5 3.3 62 21-82 23-84 (111)
25 2wiu_B HTH-type transcriptiona 99.5 2.5E-14 1.1E-18 104.6 3.7 63 20-82 11-73 (88)
26 3omt_A Uncharacterized protein 99.5 2.8E-14 1.2E-18 104.3 3.7 63 21-83 8-70 (73)
27 3bs3_A Putative DNA-binding pr 99.4 3E-14 1.3E-18 104.1 3.4 65 18-82 7-71 (76)
28 2jvl_A TRMBF1; coactivator, he 99.4 1.1E-13 4.8E-18 100.7 4.6 63 20-82 33-97 (107)
29 3eus_A DNA-binding protein; st 99.4 7.4E-13 3.1E-17 95.8 8.5 64 18-81 11-76 (86)
30 2ict_A Antitoxin HIGA; helix-t 99.4 4.5E-13 1.9E-17 97.2 7.4 60 22-81 9-68 (94)
31 1x57_A Endothelial differentia 99.4 2.1E-13 8.9E-18 99.1 5.4 61 20-80 12-72 (91)
32 1r69_A Repressor protein CI; g 99.4 4.8E-13 2E-17 97.0 6.5 60 22-82 2-61 (69)
33 2ef8_A C.ECOT38IS, putative tr 99.4 3.9E-13 1.6E-17 97.5 5.4 60 19-78 8-67 (84)
34 1zug_A Phage 434 CRO protein; 99.4 8.6E-13 3.6E-17 95.5 6.8 61 21-82 3-63 (71)
35 3cec_A Putative antidote prote 99.3 2.4E-12 9.9E-17 92.9 7.7 61 21-81 18-78 (104)
36 3g7d_A PHPD; non heme Fe(II) d 99.3 1.4E-12 6.1E-17 94.1 5.8 62 22-83 231-293 (443)
37 2awi_A PRGX; repressor, pherom 99.3 4.9E-12 2.1E-16 91.0 7.4 60 21-81 3-62 (317)
38 2l49_A C protein; P2 bacteriop 99.3 1.8E-12 7.4E-17 93.6 3.3 61 21-81 4-66 (99)
39 3bdn_A Lambda repressor; repre 99.2 5.4E-12 2.3E-16 90.7 4.7 71 11-81 7-77 (236)
40 2qfc_A PLCR protein; TPR, HTH, 99.2 2.1E-12 8.7E-17 93.2 2.5 61 20-81 4-64 (293)
41 2wus_R RODZ, putative uncharac 99.1 1.1E-10 4.7E-15 82.9 6.6 64 19-82 5-74 (112)
42 2o38_A Hypothetical protein; a 99.1 8.8E-11 3.7E-15 83.6 5.1 68 14-81 33-101 (120)
43 3fmy_A HTH-type transcriptiona 99.1 6.7E-11 2.8E-15 84.3 4.1 60 21-81 11-70 (73)
44 2eby_A Putative HTH-type trans 99.0 7.7E-10 3.2E-14 78.0 6.1 59 23-81 12-71 (113)
45 2ppx_A AGR_C_3184P, uncharacte 98.9 7.8E-10 3.3E-14 77.9 5.0 60 21-81 30-89 (99)
46 2fjr_A Repressor protein CI; g 98.9 4.4E-09 1.8E-13 73.5 6.7 58 24-82 9-67 (189)
47 3fym_A Putative uncharacterize 98.8 8.7E-09 3.7E-13 71.7 7.2 61 21-81 3-69 (130)
48 3o9x_A Uncharacterized HTH-typ 98.8 2.1E-09 9E-14 75.3 3.9 56 22-78 72-127 (133)
49 2auw_A Hypothetical protein NE 98.7 2.2E-08 9.3E-13 69.3 5.2 48 23-70 92-139 (170)
50 1dw9_A Cyanate lyase; cyanate 98.4 1E-06 4.2E-11 59.5 7.5 63 19-81 11-73 (156)
51 3bd1_A CRO protein; transcript 96.5 0.0022 9.3E-08 39.6 4.0 46 35-81 12-59 (79)
52 3kjx_A Transcriptional regulat 96.4 0.0028 1.2E-07 39.0 4.4 46 30-75 6-54 (344)
53 2k9q_A Uncharacterized protein 96.4 0.013 5.5E-07 35.0 7.7 61 22-82 3-63 (77)
54 1neq_A DNA-binding protein NER 96.3 0.011 4.8E-07 35.4 6.9 56 24-82 12-67 (74)
55 1uxc_A FRUR (1-57), fructose r 96.3 0.0042 1.8E-07 37.9 4.5 43 35-77 1-49 (65)
56 2hsg_A Glucose-resistance amyl 96.1 0.0077 3.2E-07 36.4 5.1 43 34-76 2-47 (332)
57 3h5t_A Transcriptional regulat 96.0 0.0043 1.8E-07 37.9 3.4 46 30-75 5-53 (366)
58 1zx4_A P1 PARB, plasmid partit 95.9 0.0089 3.7E-07 36.0 4.8 36 21-57 12-47 (192)
59 2h8r_A Hepatocyte nuclear fact 95.6 0.044 1.9E-06 31.9 7.4 45 20-64 30-74 (221)
60 1qpz_A PURA, protein (purine n 95.6 0.013 5.6E-07 35.0 4.7 42 36-77 2-46 (340)
61 3e3m_A Transcriptional regulat 95.1 0.0029 1.2E-07 38.9 0.0 48 30-77 8-58 (355)
62 3bil_A Probable LACI-family tr 94.7 0.0046 1.9E-07 37.7 0.0 47 31-77 5-54 (348)
63 2w48_A Sorbitol operon regulat 94.6 0.03 1.3E-06 32.9 4.1 55 21-75 8-75 (315)
64 3dbi_A Sugar-binding transcrip 94.3 0.0061 2.6E-07 37.0 0.0 44 34-77 3-49 (338)
65 3h5o_A Transcriptional regulat 94.3 0.0064 2.7E-07 36.9 0.0 46 32-77 2-50 (339)
66 1jye_A Lactose operon represso 94.2 0.0069 2.9E-07 36.7 0.0 45 33-77 2-49 (349)
67 1jhf_A LEXA repressor; LEXA SO 93.8 0.08 3.4E-06 30.4 4.8 37 17-54 7-46 (202)
68 2o20_A Catabolite control prot 93.7 0.0095 4E-07 35.9 0.0 46 32-77 3-51 (332)
69 1jhg_A Trp operon repressor; c 93.7 0.098 4.1E-06 29.8 5.1 41 17-57 39-81 (101)
70 3frw_A Putative Trp repressor 93.5 0.12 5.2E-06 29.3 5.4 41 17-57 40-81 (107)
71 3kor_A Possible Trp repressor; 93.3 0.13 5.3E-06 29.2 5.1 41 17-57 57-98 (119)
72 3jvd_A Transcriptional regulat 93.2 0.013 5.4E-07 35.1 0.0 46 32-77 4-52 (333)
73 2ox6_A Hypothetical protein SO 93.2 0.29 1.2E-05 27.0 6.9 48 23-70 9-56 (166)
74 2oi8_A Putative regulatory pro 93.1 0.14 5.9E-06 28.9 5.2 70 1-70 1-72 (216)
75 3mky_B Protein SOPB; partition 93.1 0.069 2.9E-06 30.7 3.6 56 22-77 29-98 (189)
76 3ctp_A Periplasmic binding pro 92.8 0.016 6.6E-07 34.6 0.0 42 36-77 4-48 (330)
77 1r71_A Transcriptional repress 92.6 0.14 5.9E-06 28.9 4.6 35 21-56 40-74 (178)
78 2csf_A DNA-binding protein SAT 92.4 0.41 1.7E-05 26.1 6.7 60 20-79 20-86 (101)
79 1ui5_A A-factor receptor homol 92.3 0.18 7.6E-06 28.2 4.9 64 1-71 1-66 (215)
80 3mvp_A TETR/ACRR transcription 92.2 0.44 1.8E-05 26.0 6.7 71 1-71 11-83 (217)
81 1zs4_A Regulatory protein CII; 92.1 0.089 3.8E-06 30.1 3.1 41 33-77 23-63 (83)
82 3d1n_I POU domain, class 6, tr 91.8 0.69 2.9E-05 24.8 7.6 52 16-69 3-60 (151)
83 2jn6_A Protein CGL2762, transp 91.8 0.15 6.5E-06 28.7 4.0 27 29-55 18-44 (97)
84 2o0m_A Transcriptional regulat 91.6 0.065 2.7E-06 30.9 2.0 38 26-63 26-68 (345)
85 3kz9_A SMCR; transcriptional r 91.4 0.29 1.2E-05 27.1 5.1 54 20-73 21-76 (206)
86 3gzi_A Transcriptional regulat 91.4 0.32 1.3E-05 26.8 5.3 71 1-72 2-75 (218)
87 1ic8_A Hepatocyte nuclear fact 90.7 0.48 2E-05 25.7 5.7 45 20-64 29-73 (194)
88 1t56_A EThr repressor; helix-t 90.7 0.24 1E-05 27.6 4.1 51 21-71 29-81 (216)
89 2d5v_A Hepatocyte nuclear fact 89.9 0.38 1.6E-05 26.4 4.5 58 20-77 7-70 (164)
90 1rp3_A RNA polymerase sigma fa 89.7 0.27 1.1E-05 27.2 3.7 32 26-57 195-226 (239)
91 1u8b_A ADA polyprotein; protei 89.7 0.52 2.2E-05 25.6 5.1 47 19-65 78-124 (133)
92 3ljl_A Transcriptional regulat 89.6 0.26 1.1E-05 27.4 3.5 66 1-70 4-70 (156)
93 3frq_A Repressor protein MPHR( 89.5 0.47 2E-05 25.8 4.8 66 1-73 2-67 (195)
94 3cwr_A Transcriptional regulat 89.3 0.4 1.7E-05 26.2 4.3 66 3-69 5-72 (208)
95 1z05_A Transcriptional regulat 88.9 0.53 2.2E-05 25.5 4.7 33 22-54 41-73 (429)
96 1jko_C HIN recombinase, DNA-in 88.8 0.25 1E-05 27.5 3.0 32 26-58 14-45 (52)
97 1nr3_A MTH0916, DNA-binding pr 88.6 0.011 4.4E-07 35.6 -4.2 26 32-57 3-28 (122)
98 3bru_A Regulatory protein, TET 88.4 0.51 2.1E-05 25.6 4.4 52 20-71 34-87 (222)
99 1s4k_A Putative cytoplasmic pr 88.2 0.98 4.1E-05 23.9 5.7 49 23-71 5-55 (120)
100 3on2_A Probable transcriptiona 87.7 0.19 8.1E-06 28.1 1.9 68 1-72 1-70 (199)
101 2xsd_C POU domain, class 3, tr 87.2 1.6 6.8E-05 22.6 6.9 51 18-70 14-70 (164)
102 3iwf_A Transcription regulator 86.8 0.86 3.6E-05 24.3 4.7 44 9-56 13-57 (107)
103 3k2z_A LEXA repressor; winged 86.7 1.1 4.5E-05 23.7 5.2 35 17-52 6-42 (196)
104 1r8d_A Transcription activator 86.7 0.95 4E-05 24.0 4.9 47 34-80 2-65 (109)
105 1u78_A TC3 transposase, transp 86.5 0.68 2.8E-05 24.9 4.1 28 27-55 16-43 (141)
106 1z6r_A MLC protein; transcript 86.4 0.44 1.8E-05 26.0 3.1 33 22-54 18-50 (406)
107 1ku3_A Sigma factor SIGA; heli 86.3 0.59 2.5E-05 25.2 3.7 32 26-57 18-53 (73)
108 1e3o_C Octamer-binding transcr 86.3 1.8 7.6E-05 22.3 7.9 43 17-59 7-55 (160)
109 2dg7_A Putative transcriptiona 86.1 1.1 4.5E-05 23.7 5.0 40 23-62 16-55 (195)
110 3cjd_A Transcriptional regulat 86.1 1 4.2E-05 23.8 4.8 49 23-71 21-69 (198)
111 2gfn_A HTH-type transcriptiona 86.1 0.88 3.7E-05 24.2 4.5 50 23-72 18-67 (209)
112 2p7v_B Sigma-70, RNA polymeras 86.0 0.5 2.1E-05 25.7 3.2 26 32-57 23-48 (68)
113 2r0q_C Putative transposon TN5 86.0 1.4 6.1E-05 22.9 5.5 36 22-58 164-199 (209)
114 2wui_A MEXZ, transcriptional r 85.9 0.17 7.1E-06 28.4 0.8 66 1-71 1-68 (210)
115 1vz0_A PARB, chromosome partit 85.8 0.61 2.6E-05 25.1 3.6 32 24-56 125-156 (230)
116 2ibd_A Possible transcriptiona 85.7 0.75 3.2E-05 24.6 4.0 54 20-73 18-73 (204)
117 2np5_A Transcriptional regulat 85.4 1.2 5.2E-05 23.3 5.0 54 21-74 14-69 (203)
118 3b81_A Transcriptional regulat 85.2 0.55 2.3E-05 25.4 3.1 65 1-71 2-68 (203)
119 2hyt_A TETR-family transcripti 85.2 0.23 9.8E-06 27.6 1.2 50 23-72 21-70 (197)
120 2xdn_A HTH-type transcriptiona 85.0 0.94 3.9E-05 24.0 4.2 50 21-70 16-67 (210)
121 3f1b_A TETR-like transcription 84.8 1.7 7.1E-05 22.5 5.4 55 19-73 17-73 (203)
122 3c2b_A Transcriptional regulat 84.7 0.95 4E-05 24.0 4.1 68 1-71 3-72 (221)
123 2dg8_A Putative TETR-family tr 84.5 1 4.4E-05 23.8 4.2 65 1-72 1-67 (193)
124 1x2l_A CUT-like 2, homeobox pr 84.2 1.3 5.5E-05 23.1 4.7 58 19-76 19-83 (101)
125 2gau_A Transcriptional regulat 83.9 0.66 2.8E-05 24.9 3.0 40 33-72 179-231 (232)
126 1vi0_A Transcriptional regulat 83.4 1.2 5E-05 23.4 4.2 52 20-71 12-65 (206)
127 3knw_A Putative transcriptiona 83.3 1.1 4.6E-05 23.6 4.0 54 26-79 26-79 (212)
128 2vz4_A Tipal, HTH-type transcr 83.2 1.6 6.7E-05 22.6 4.8 46 35-80 2-64 (108)
129 1umq_A Photosynthetic apparatu 83.1 1.1 4.7E-05 23.6 3.9 33 23-55 43-75 (81)
130 3bjb_A Probable transcriptiona 83.0 1.4 6E-05 22.9 4.4 63 12-74 18-82 (207)
131 2nx4_A Transcriptional regulat 82.8 1.2 5.1E-05 23.3 4.0 49 25-73 21-69 (194)
132 1rzs_A Antirepressor, regulato 82.8 1.3 5.4E-05 23.2 4.1 36 36-74 12-47 (61)
133 1l0o_C Sigma factor; bergerat 82.7 0.2 8.4E-06 28.0 0.0 32 26-57 206-237 (243)
134 1wiz_A DNA-binding protein SAT 82.5 1.8 7.5E-05 22.4 4.8 59 21-79 21-86 (101)
135 1k78_A Paired box protein PAX5 82.4 2.4 0.0001 21.6 5.4 31 23-54 38-68 (149)
136 1wh8_A CUT-like 2, homeobox pr 82.1 1.8 7.4E-05 22.4 4.6 57 20-76 30-93 (111)
137 2wte_A CSA3; antiviral protein 82.1 1.1 4.8E-05 23.5 3.7 32 23-54 155-186 (244)
138 2w53_A Repressor, SMet; antibi 82.0 1.3 5.6E-05 23.1 4.0 66 1-71 1-68 (219)
139 3hta_A EBRA repressor; TETR fa 82.0 2.4 1E-04 21.6 5.2 53 21-73 33-87 (217)
140 1hlv_A CENP-B, major centromer 81.5 0.95 4E-05 24.0 3.1 34 24-57 15-48 (131)
141 3g7r_A Putative transcriptiona 81.5 1.8 7.6E-05 22.3 4.5 51 23-73 44-94 (221)
142 2o3f_A Putative HTH-type trans 81.5 1.7 6.9E-05 22.6 4.3 53 9-65 17-70 (111)
143 3npi_A TETR family regulatory 81.4 2 8.3E-05 22.1 4.7 60 22-81 26-85 (251)
144 3on4_A Transcriptional regulat 81.4 1.6 6.6E-05 22.7 4.2 49 23-71 19-67 (191)
145 1tty_A Sigma-A, RNA polymerase 81.2 2.3 9.6E-05 21.7 5.0 43 32-74 36-83 (87)
146 1s7o_A Hypothetical UPF0122 pr 81.1 1.7 7.2E-05 22.5 4.3 30 25-54 29-58 (113)
147 2oer_A Probable transcriptiona 81.1 1 4.2E-05 23.9 3.1 43 31-73 41-83 (214)
148 2f07_A YVDT; helix-turn-helix, 80.9 3 0.00013 21.0 6.6 43 31-73 27-69 (197)
149 1wh6_A CUT-like 2, homeobox pr 80.9 1.8 7.5E-05 22.3 4.3 56 19-74 19-81 (101)
150 2gen_A Probable transcriptiona 80.6 1.9 8.1E-05 22.2 4.4 46 23-68 16-61 (197)
151 3bdd_A Regulatory protein MARR 80.3 1.4 5.9E-05 23.0 3.6 30 25-54 36-65 (142)
152 2qtq_A Transcriptional regulat 80.2 2.4 1E-04 21.6 4.7 52 21-72 21-74 (213)
153 3bni_A Putative TETR-family tr 79.7 2 8.5E-05 22.0 4.3 40 30-69 59-98 (229)
154 2hoe_A N-acetylglucosamine kin 79.7 1.4 6.1E-05 22.9 3.5 29 25-54 25-53 (380)
155 2d1h_A ST1889, 109AA long hypo 79.6 1.6 6.8E-05 22.6 3.7 29 26-54 27-56 (109)
156 2o8x_A Probable RNA polymerase 79.4 1.7 7.3E-05 22.4 3.9 34 24-57 21-55 (70)
157 2hyj_A Putative TETR-family tr 78.9 1.7 7.3E-05 22.4 3.7 51 23-73 21-71 (200)
158 3ccy_A Putative TETR-family tr 78.9 0.85 3.6E-05 24.3 2.1 62 1-68 4-68 (203)
159 2rdp_A Putative transcriptiona 78.8 1.7 7.1E-05 22.5 3.6 30 25-54 47-76 (150)
160 1pdn_C Protein (PRD paired); p 78.7 3.4 0.00014 20.7 5.2 31 23-54 23-53 (128)
161 2eth_A Transcriptional regulat 78.5 1.7 7E-05 22.5 3.5 30 25-54 49-78 (154)
162 3hug_A RNA polymerase sigma fa 78.4 2 8.2E-05 22.1 3.9 48 24-75 43-90 (92)
163 1tlh_B Sigma-70, RNA polymeras 78.1 1.7 7.2E-05 22.5 3.5 25 33-57 37-61 (81)
164 1sfx_A Conserved hypothetical 78.0 2.4 1E-04 21.6 4.2 31 24-54 24-54 (109)
165 1xsv_A Hypothetical UPF0122 pr 77.9 1.9 7.9E-05 22.2 3.7 31 24-54 31-61 (113)
166 2zb9_A Putative transcriptiona 77.8 3.8 0.00016 20.4 5.7 50 20-69 27-78 (214)
167 2g7s_A Transcriptional regulat 77.8 2.1 8.6E-05 22.0 3.8 49 25-73 19-67 (194)
168 2rae_A Transcriptional regulat 77.7 1.6 6.7E-05 22.7 3.2 47 26-72 29-75 (207)
169 3cta_A Riboflavin kinase; stru 77.7 2.5 0.0001 21.5 4.2 32 23-54 10-47 (230)
170 3lwj_A Putative TETR-family tr 77.6 2.7 0.00011 21.3 4.4 53 21-73 17-71 (202)
171 2ao9_A Phage protein; structur 77.5 1.3 5.5E-05 23.2 2.7 26 31-56 45-70 (155)
172 3g3z_A NMB1585, transcriptiona 77.3 2 8.3E-05 22.1 3.6 30 25-54 36-65 (145)
173 3bpv_A Transcriptional regulat 77.2 1.9 7.8E-05 22.3 3.5 29 26-54 35-63 (138)
174 3mn2_A Probable ARAC family tr 77.1 4 0.00017 20.3 5.5 33 32-64 16-48 (108)
175 2id3_A Putative transcriptiona 77.0 4 0.00017 20.3 5.2 53 21-73 45-99 (225)
176 3nrv_A Putative transcriptiona 76.9 1.7 7E-05 22.5 3.2 31 24-54 44-74 (148)
177 3nrg_A TETR family transcripti 76.8 0.51 2.1E-05 25.6 0.5 39 33-71 32-70 (217)
178 1eto_A FIS, factor for inversi 76.7 2.6 0.00011 21.4 4.1 31 23-53 60-90 (98)
179 2o7t_A Transcriptional regulat 76.6 4.1 0.00017 20.2 5.1 40 31-70 25-64 (199)
180 1gdt_A GD resolvase, protein ( 76.5 2.6 0.00011 21.4 4.1 30 26-56 151-180 (183)
181 3iwz_A CAP-like, catabolite ac 76.5 1.3 5.5E-05 23.2 2.5 21 34-54 187-207 (230)
182 2nnn_A Probable transcriptiona 76.1 2.1 8.7E-05 22.0 3.5 30 25-54 43-72 (140)
183 1pb6_A Hypothetical transcript 76.1 3.7 0.00015 20.5 4.7 53 21-73 23-77 (212)
184 2v57_A TETR family transcripti 76.0 1.8 7.7E-05 22.3 3.2 54 20-73 18-71 (190)
185 2a61_A Transcriptional regulat 76.0 2.3 9.7E-05 21.7 3.7 30 25-54 38-67 (145)
186 2o4a_A DNA-binding protein SAT 75.9 4.3 0.00018 20.1 6.9 59 21-79 11-76 (93)
187 2k27_A Paired box protein PAX- 75.9 3.5 0.00015 20.6 4.6 24 31-54 38-61 (159)
188 2pex_A Transcriptional regulat 75.8 1.6 6.6E-05 22.7 2.8 30 25-54 52-81 (153)
189 2ia0_A Putative HTH-type trans 75.8 2.3 9.6E-05 21.7 3.6 30 24-53 21-50 (171)
190 1yse_A DNA-binding protein SAT 75.8 2.1 8.7E-05 22.0 3.4 58 21-78 25-89 (141)
191 3crj_A Transcription regulator 75.7 4.2 0.00018 20.2 4.9 47 25-71 25-71 (199)
192 2w25_A Probable transcriptiona 75.7 2.3 9.7E-05 21.7 3.6 30 24-53 11-40 (150)
193 1jgs_A Multiple antibiotic res 75.6 2.3 9.8E-05 21.7 3.6 31 24-54 38-68 (138)
194 1z91_A Organic hydroperoxide r 75.6 1.3 5.4E-05 23.2 2.3 30 25-54 45-74 (147)
195 2fbq_A Probable transcriptiona 75.4 4.3 0.00018 20.1 4.9 60 10-69 2-62 (235)
196 3lsg_A Two-component response 75.4 2.8 0.00012 21.2 3.9 31 32-62 17-47 (103)
197 2yve_A Transcriptional regulat 75.3 2.5 0.00011 21.5 3.7 48 30-77 20-67 (185)
198 1ft9_A Carbon monoxide oxidati 75.3 1.5 6.3E-05 22.8 2.6 39 33-71 162-214 (222)
199 3f0c_A TETR-molecule A, transc 75.1 0.99 4.2E-05 23.9 1.6 51 23-73 20-70 (216)
200 2p5v_A Transcriptional regulat 75.0 2.5 0.0001 21.5 3.6 30 24-53 14-43 (162)
201 2dbb_A Putative HTH-type trans 74.9 2.3 9.7E-05 21.7 3.5 30 24-53 13-42 (151)
202 1ojl_A Transcriptional regulat 74.9 2.7 0.00011 21.3 3.8 32 23-54 270-301 (304)
203 2jj7_A Hemolysin II regulatory 74.8 3.3 0.00014 20.7 4.2 47 23-69 16-62 (186)
204 2zdb_A Transcriptional regulat 74.8 1.3 5.3E-05 23.3 2.1 38 34-71 139-189 (195)
205 1j5y_A Transcriptional regulat 74.8 4.1 0.00017 20.2 4.7 33 22-54 23-56 (187)
206 3e7l_A Transcriptional regulat 74.7 3.1 0.00013 20.9 4.1 32 23-54 21-52 (63)
207 1l9z_H Sigma factor SIGA; heli 74.7 1.7 7.2E-05 22.5 2.7 25 33-57 394-418 (438)
208 3gp4_A Transcriptional regulat 74.6 1.4 6E-05 22.9 2.3 47 34-80 2-65 (142)
209 2zhg_A Redox-sensitive transcr 74.5 1.5 6.2E-05 22.8 2.4 51 30-80 7-73 (154)
210 3geu_A Intercellular adhesion 74.5 3.1 0.00013 20.9 4.0 49 23-71 12-60 (189)
211 3dcf_A Transcriptional regulat 74.4 1.9 7.9E-05 22.2 2.9 52 21-72 36-89 (218)
212 2elh_A CG11849-PA, LD40883P; s 74.4 4 0.00017 20.3 4.5 26 31-56 35-60 (87)
213 3cjn_A Transcriptional regulat 74.4 1.8 7.5E-05 22.4 2.8 31 24-54 56-86 (162)
214 3ech_A MEXR, multidrug resista 74.3 1.7 7.3E-05 22.4 2.7 30 25-54 42-71 (142)
215 2pij_A Prophage PFL 6 CRO; tra 74.2 1.5 6.2E-05 22.9 2.3 28 36-63 15-42 (67)
216 2cyy_A Putative HTH-type trans 74.1 2.5 0.00011 21.5 3.5 30 24-53 11-40 (151)
217 1q06_A Transcriptional regulat 73.9 1.6 6.6E-05 22.7 2.4 23 35-57 1-23 (135)
218 2qww_A Transcriptional regulat 73.9 1.9 7.9E-05 22.2 2.8 30 25-54 46-75 (154)
219 2k9s_A Arabinose operon regula 73.9 3.5 0.00015 20.7 4.1 40 23-62 6-48 (107)
220 2jml_A DNA binding domain/tran 73.7 0.97 4.1E-05 23.9 1.3 48 33-80 4-70 (81)
221 3egq_A TETR family transcripti 73.6 1.5 6.1E-05 22.9 2.1 41 31-71 21-61 (170)
222 2pn6_A ST1022, 150AA long hypo 73.5 1.7 7.3E-05 22.4 2.5 30 24-53 7-36 (150)
223 2fa5_A Transcriptional regulat 73.5 2.6 0.00011 21.4 3.4 29 26-54 55-83 (162)
224 3ni7_A Bacterial regulatory pr 73.2 4.4 0.00019 20.0 4.6 52 20-71 11-64 (213)
225 1i1g_A Transcriptional regulat 73.2 2.9 0.00012 21.1 3.6 30 24-53 8-37 (141)
226 3oop_A LIN2960 protein; protei 73.1 2.5 0.0001 21.5 3.2 30 25-54 42-71 (143)
227 1rkt_A Protein YFIR; transcrip 73.1 5.1 0.00021 19.7 5.3 52 20-71 16-69 (205)
228 3mzy_A RNA polymerase sigma-H 73.0 3.4 0.00014 20.7 3.9 28 29-56 119-146 (164)
229 2rek_A Putative TETR-family tr 73.0 4.7 0.0002 19.9 4.6 39 33-71 34-72 (199)
230 3kcc_A Catabolite gene activat 72.7 1.9 7.8E-05 22.3 2.5 21 34-54 217-237 (260)
231 3g1l_A Transcriptional regulat 72.7 0.99 4.2E-05 23.9 1.1 39 33-71 63-101 (256)
232 3la7_A Global nitrogen regulat 72.6 2 8.4E-05 22.1 2.7 21 34-54 193-213 (243)
233 3dpj_A Transcription regulator 72.4 5.3 0.00022 19.6 5.7 51 21-71 13-65 (194)
234 2cfx_A HTH-type transcriptiona 72.4 3.1 0.00013 20.9 3.6 29 25-53 10-38 (144)
235 3i4p_A Transcriptional regulat 72.1 2 8.2E-05 22.1 2.5 29 24-52 7-35 (162)
236 3nqo_A MARR-family transcripti 71.9 1.9 8.2E-05 22.1 2.5 23 32-54 55-77 (189)
237 2g7g_A RHA04620, putative tran 71.8 2.1 8.8E-05 21.9 2.6 49 21-69 16-64 (213)
238 2o0y_A Transcriptional regulat 71.7 0.81 3.4E-05 24.4 0.5 54 1-54 4-58 (260)
239 2nyx_A Probable transcriptiona 71.7 2.8 0.00012 21.2 3.3 30 25-54 50-79 (168)
240 1s3j_A YUSO protein; structura 71.7 2.3 9.7E-05 21.7 2.8 30 25-54 42-71 (155)
241 1ntc_A Protein (nitrogen regul 71.7 2.4 0.0001 21.6 2.9 31 23-53 53-83 (91)
242 2zcm_A Biofilm operon icaabcd 71.7 3.3 0.00014 20.8 3.6 45 26-70 19-63 (192)
243 3bqz_B HTH-type transcriptiona 71.5 2.9 0.00012 21.1 3.3 49 23-71 11-59 (194)
244 2d6y_A Putative TETR family re 71.2 3.3 0.00014 20.8 3.5 46 23-68 17-62 (202)
245 2hr3_A Probable transcriptiona 71.1 3.5 0.00015 20.6 3.6 31 24-54 39-70 (147)
246 2i10_A Putative TETR transcrip 71.0 1.4 6.1E-05 22.9 1.7 40 26-65 23-62 (202)
247 3kkc_A TETR family transcripti 70.8 1.8 7.6E-05 22.3 2.1 54 20-73 15-71 (177)
248 3e6c_C CPRK, cyclic nucleotide 70.7 2.4 9.9E-05 21.7 2.7 40 33-72 176-228 (250)
249 3e7q_A Transcriptional regulat 70.6 1.6 6.9E-05 22.6 1.9 50 23-72 23-72 (215)
250 2pz9_A Putative regulatory pro 70.6 2.8 0.00012 21.2 3.1 48 23-70 39-86 (226)
251 2ovg_A Phage lambda CRO; trans 70.5 2 8.4E-05 22.1 2.3 34 27-62 8-41 (66)
252 3bj6_A Transcriptional regulat 70.5 2.5 0.00011 21.5 2.8 30 25-54 45-74 (152)
253 2e1c_A Putative HTH-type trans 70.4 3.7 0.00015 20.5 3.6 31 23-53 30-60 (171)
254 1ub9_A Hypothetical protein PH 70.2 2.4 1E-04 21.6 2.6 29 26-54 22-50 (100)
255 2a6h_F RNA polymerase sigma fa 69.8 1.4 6E-05 22.9 1.4 26 32-57 378-403 (423)
256 2l1p_A DNA-binding protein SAT 69.5 2.6 0.00011 21.3 2.7 40 22-63 22-61 (83)
257 3oio_A Transcriptional regulat 69.5 4.1 0.00017 20.2 3.7 35 31-65 20-54 (113)
258 3eco_A MEPR; mutlidrug efflux 69.5 1.9 8.2E-05 22.1 2.0 24 31-54 44-67 (139)
259 3cdl_A Transcriptional regulat 69.3 2.5 0.00011 21.4 2.6 48 26-73 21-68 (203)
260 1ku9_A Hypothetical protein MJ 69.2 2 8.6E-05 22.0 2.1 24 31-54 38-61 (152)
261 3hh0_A Transcriptional regulat 69.1 2.3 9.7E-05 21.7 2.4 49 32-80 2-67 (146)
262 3e97_A Transcriptional regulat 68.9 2.7 0.00011 21.3 2.7 21 34-54 175-195 (231)
263 2cg4_A Regulatory protein ASNC 68.9 4.1 0.00017 20.2 3.6 30 24-53 12-41 (152)
264 3dv8_A Transcriptional regulat 68.7 6.4 0.00027 19.1 4.9 38 34-71 169-219 (220)
265 2eh3_A Transcriptional regulat 68.3 2.5 0.00011 21.5 2.4 42 31-72 19-60 (179)
266 3iyd_F RNA polymerase sigma fa 68.2 0.51 2.2E-05 25.6 -1.1 32 26-57 558-593 (613)
267 3dew_A Transcriptional regulat 68.0 4.2 0.00018 20.2 3.5 53 21-73 13-67 (206)
268 2fxa_A Protease production reg 67.9 3.5 0.00015 20.6 3.1 29 26-54 54-82 (207)
269 1lj9_A Transcriptional regulat 67.8 3.1 0.00013 20.9 2.8 30 25-54 34-63 (144)
270 2fmy_A COOA, carbon monoxide o 67.6 3 0.00013 21.0 2.7 40 33-72 166-219 (220)
271 3gpv_A Transcriptional regulat 67.6 2.4 0.0001 21.6 2.2 50 31-80 13-79 (148)
272 3lhq_A Acrab operon repressor 67.1 6.9 0.00029 18.9 4.7 47 26-72 26-72 (220)
273 2hxo_A Putative TETR-family tr 67.1 1.7 7E-05 22.6 1.3 52 21-72 21-74 (237)
274 3bro_A Transcriptional regulat 66.9 6 0.00025 19.2 4.1 29 26-54 40-70 (141)
275 3k0l_A Repressor protein; heli 66.9 2.5 0.0001 21.5 2.2 29 26-54 52-80 (162)
276 2q24_A Putative TETR family tr 66.8 4.6 0.00019 19.9 3.5 39 34-72 34-72 (194)
277 3dn7_A Cyclic nucleotide bindi 66.7 0.96 4E-05 24.0 0.0 25 32-56 166-190 (194)
278 2guh_A Putative TETR-family tr 66.6 5 0.00021 19.7 3.7 41 21-61 44-86 (214)
279 3pas_A TETR family transcripti 66.1 4.2 0.00018 20.1 3.2 45 28-72 22-66 (195)
280 3eup_A Transcriptional regulat 66.0 4.6 0.00019 19.9 3.4 52 23-74 20-71 (204)
281 3c07_A Putative TETR-family tr 65.9 7.3 0.00031 18.7 4.6 38 33-70 60-97 (273)
282 2hku_A A putative transcriptio 65.8 3.6 0.00015 20.6 2.8 49 23-72 29-77 (215)
283 2oz6_A Virulence factor regula 65.8 3.2 0.00014 20.8 2.6 22 34-55 164-185 (207)
284 2g7l_A TETR-family transcripti 65.7 2.1 8.8E-05 22.0 1.6 34 31-64 36-69 (243)
285 3f3x_A Transcriptional regulat 65.5 4.3 0.00018 20.1 3.1 24 31-54 47-70 (144)
286 3jsj_A Putative TETR-family tr 65.3 3 0.00013 21.0 2.3 41 33-73 27-67 (190)
287 2qwt_A Transcriptional regulat 65.0 2.9 0.00012 21.1 2.2 40 33-72 31-70 (196)
288 3bhq_A Transcriptional regulat 64.9 3.5 0.00015 20.6 2.6 49 23-71 21-69 (211)
289 1zk8_A Transcriptional regulat 64.9 2.8 0.00012 21.2 2.1 49 25-73 19-67 (183)
290 2ras_A Transcriptional regulat 64.6 2.4 0.0001 21.6 1.7 32 30-61 27-58 (212)
291 3dkw_A DNR protein; CRP-FNR, H 64.6 2.5 0.00011 21.5 1.8 22 33-54 177-198 (227)
292 3col_A Putative transcription 64.5 6.3 0.00026 19.1 3.8 43 31-73 27-69 (196)
293 3o60_A LIN0861 protein; PSI, M 64.5 7.7 0.00032 18.6 6.9 62 12-73 14-79 (185)
294 3mkl_A HTH-type transcriptiona 64.3 6.7 0.00028 18.9 3.9 33 32-65 21-53 (120)
295 2zkz_A Transcriptional repress 64.2 5.5 0.00023 19.5 3.5 28 27-54 34-61 (99)
296 3fx3_A Cyclic nucleotide-bindi 64.0 2.6 0.00011 21.4 1.8 39 33-71 177-227 (237)
297 1zyb_A Transcription regulator 63.7 3.7 0.00016 20.4 2.6 21 34-54 186-206 (232)
298 2g3b_A Putative TETR-family tr 63.5 5.8 0.00024 19.3 3.5 47 23-69 12-58 (208)
299 2iai_A Putative transcriptiona 63.5 2.4 0.0001 21.6 1.5 49 23-71 39-87 (230)
300 2zcx_A SCO7815, TETR-family tr 63.5 8.1 0.00034 18.5 5.0 46 23-68 32-77 (231)
301 2rn7_A IS629 ORFA; helix, all 63.3 5 0.00021 19.7 3.1 23 33-55 29-51 (108)
302 1g2h_A Transcriptional regulat 62.9 5.6 0.00024 19.4 3.3 27 27-54 27-53 (61)
303 3cdh_A Transcriptional regulat 62.9 2.6 0.00011 21.4 1.6 29 26-54 49-77 (155)
304 3deu_A Transcriptional regulat 62.8 4.3 0.00018 20.1 2.7 29 26-54 59-88 (166)
305 2id6_A Transcriptional regulat 62.7 4.8 0.0002 19.8 2.9 47 23-69 14-60 (202)
306 2fbh_A Transcriptional regulat 62.6 4.3 0.00018 20.1 2.7 23 32-54 50-72 (146)
307 3e6m_A MARR family transcripti 62.3 4.2 0.00018 20.1 2.6 30 25-54 58-87 (161)
308 3bqy_A Putative TETR family tr 62.0 2.6 0.00011 21.4 1.5 49 23-71 11-59 (209)
309 1or7_A Sigma-24, RNA polymeras 61.9 7.4 0.00031 18.7 3.8 32 25-56 147-178 (194)
310 3jw4_A Transcriptional regulat 61.9 2.2 9.1E-05 21.9 1.1 29 26-54 47-77 (148)
311 3oou_A LIN2118 protein; protei 61.9 8.6 0.00036 18.3 4.9 34 32-65 19-52 (108)
312 1z0x_A Transcriptional regulat 61.8 2.5 0.00011 21.5 1.4 55 20-74 9-66 (220)
313 2qco_A CMER; transcriptional r 61.7 3.2 0.00013 20.9 1.9 52 21-72 18-71 (210)
314 2qib_A TETR-family transcripti 61.7 5.1 0.00022 19.6 2.9 53 21-73 18-72 (231)
315 1xwr_A Regulatory protein CII; 61.3 1.2 5E-05 23.4 -0.4 35 33-68 22-56 (97)
316 3b73_A PHIH1 repressor-like pr 61.1 4.8 0.0002 19.8 2.7 29 25-53 18-48 (111)
317 2zcw_A TTHA1359, transcription 60.3 4.6 0.00019 19.9 2.5 42 33-74 145-199 (202)
318 3cuo_A Uncharacterized HTH-typ 60.2 3.3 0.00014 20.8 1.7 28 27-54 31-58 (99)
319 2fq4_A Transcriptional regulat 60.2 9.3 0.00039 18.1 4.8 41 21-61 17-59 (192)
320 2fbi_A Probable transcriptiona 60.1 6 0.00025 19.2 3.1 29 26-54 42-70 (142)
321 3d0s_A Transcriptional regulat 59.8 4.8 0.0002 19.8 2.6 39 33-71 176-227 (227)
322 1j9i_A GPNU1 DBD;, terminase s 59.6 3.4 0.00014 20.7 1.7 23 34-56 2-24 (68)
323 3he0_A Transcriptional regulat 59.1 5 0.00021 19.7 2.5 42 25-66 22-63 (196)
324 1fse_A GERE; helix-turn-helix 59.0 5.5 0.00023 19.4 2.7 27 30-56 22-48 (74)
325 3bja_A Transcriptional regulat 58.6 2.1 8.9E-05 21.9 0.6 31 24-54 37-67 (139)
326 2vpr_A Tetracycline resistance 58.6 4.7 0.0002 19.9 2.3 51 23-73 13-63 (207)
327 3hsr_A HTH-type transcriptiona 58.4 2.1 8.7E-05 22.0 0.5 29 26-54 42-70 (140)
328 2opt_A Actii protein; helical 58.1 4.4 0.00018 20.0 2.1 41 26-66 18-58 (234)
329 2vke_A Tetracycline repressor 57.9 6.3 0.00026 19.1 2.9 46 26-71 15-60 (207)
330 3kkd_A Transcriptional regulat 57.7 2.7 0.00011 21.3 1.0 48 23-70 44-91 (237)
331 2of7_A Putative TETR-family tr 57.6 4.7 0.0002 19.9 2.2 37 24-60 58-94 (260)
332 1x3u_A Transcriptional regulat 57.5 5.6 0.00024 19.4 2.6 46 30-75 27-76 (79)
333 2fd5_A Transcriptional regulat 57.4 6.7 0.00028 18.9 2.9 51 23-73 16-66 (180)
334 3nnr_A Transcriptional regulat 57.3 10 0.00044 17.8 4.9 42 21-62 10-53 (228)
335 3fm5_A Transcriptional regulat 57.2 4.4 0.00018 20.0 2.0 23 32-54 52-74 (150)
336 2dg6_A Putative transcriptiona 56.9 5.4 0.00023 19.5 2.4 20 36-55 2-21 (222)
337 3kp7_A Transcriptional regulat 56.6 5.4 0.00023 19.5 2.3 28 26-54 44-71 (151)
338 3gbg_A TCP pilus virulence reg 56.5 11 0.00045 17.7 4.2 33 32-65 183-215 (276)
339 1ngr_A P75 low affinity neurot 56.5 5.4 0.00023 19.5 2.4 47 34-81 21-67 (85)
340 1rr7_A Middle operon regulator 56.5 9.7 0.00041 18.0 3.6 34 24-57 82-115 (129)
341 3hef_A Gene 1 protein; bacteri 56.4 4.8 0.0002 19.8 2.1 44 22-68 20-64 (143)
342 1t33_A Putative transcriptiona 56.3 11 0.00046 17.7 5.9 36 33-69 31-66 (224)
343 1r1u_A CZRA, repressor protein 55.7 10 0.00044 17.8 3.7 27 28-54 33-59 (106)
344 2w7n_A TRFB transcriptional re 55.5 6.7 0.00028 19.0 2.7 32 25-56 23-56 (101)
345 2iu5_A DHAS, hypothetical prot 54.7 6.1 0.00025 19.2 2.3 45 22-66 18-65 (195)
346 2g7u_A Transcriptional regulat 54.4 7 0.0003 18.8 2.6 24 31-54 26-49 (257)
347 2jpc_A SSRB; DNA binding prote 54.2 4.7 0.0002 19.9 1.7 26 31-56 10-35 (61)
348 2hxi_A Putative transcriptiona 54.0 6.5 0.00027 19.0 2.4 44 26-69 41-84 (241)
349 1bl0_A Protein (multiple antib 53.9 4.6 0.00019 19.9 1.6 29 32-60 25-53 (129)
350 1je8_A Nitrate/nitrite respons 53.9 7.6 0.00032 18.6 2.7 26 31-56 33-58 (82)
351 2x48_A CAG38821; archeal virus 53.8 12 0.0005 17.5 4.3 30 26-55 23-52 (55)
352 2gxg_A 146AA long hypothetical 53.5 6.2 0.00026 19.1 2.3 23 32-54 48-70 (146)
353 2bv6_A MGRA, HTH-type transcri 53.5 2.9 0.00012 21.1 0.6 30 25-54 42-71 (142)
354 2krf_A Transcriptional regulat 53.4 7.5 0.00032 18.7 2.7 44 31-74 24-71 (73)
355 3boq_A Transcriptional regulat 53.3 2.4 0.0001 21.6 0.1 29 26-54 53-82 (160)
356 2oqg_A Possible transcriptiona 53.2 10 0.00043 17.8 3.3 24 31-54 31-54 (114)
357 2frh_A SARA, staphylococcal ac 53.1 7.8 0.00033 18.6 2.7 22 33-54 52-73 (127)
358 2kfs_A Conserved hypothetical 52.9 5.7 0.00024 19.4 2.0 22 35-56 32-53 (148)
359 1r8e_A Multidrug-efflux transp 52.2 4 0.00017 20.3 1.1 49 32-80 3-69 (278)
360 1u3e_M HNH homing endonuclease 52.0 7.8 0.00033 18.6 2.6 27 34-60 135-161 (174)
361 1u2w_A CADC repressor, cadmium 51.6 9.8 0.00041 18.0 3.0 27 28-54 50-76 (122)
362 3mop_A Myeloid differentiation 50.2 7.8 0.00033 18.5 2.3 45 36-81 28-72 (110)
363 3c57_A Two component transcrip 50.1 9.3 0.00039 18.1 2.7 25 31-55 39-63 (95)
364 1o5l_A Transcriptional regulat 49.7 2.8 0.00012 21.2 0.0 23 33-55 163-185 (213)
365 3lsj_A DEST; transcriptional r 49.5 1.4 5.9E-05 23.0 -1.6 49 20-68 15-66 (220)
366 1p4w_A RCSB; solution structur 49.5 8.8 0.00037 18.2 2.5 45 31-75 46-94 (99)
367 3klo_A Transcriptional regulat 48.6 9.4 0.0004 18.1 2.5 45 31-75 171-220 (225)
368 2np3_A Putative TETR-family re 48.1 3.4 0.00014 20.7 0.2 41 25-65 41-81 (212)
369 1mkm_A ICLR transcriptional re 47.4 9.1 0.00038 18.1 2.3 24 31-54 20-43 (249)
370 3lap_A Arginine repressor; arg 47.3 15 0.00064 16.8 3.5 29 26-54 26-59 (170)
371 2fbk_A Transcriptional regulat 46.3 2.3 9.6E-05 21.7 -0.9 22 33-54 85-106 (181)
372 3fiw_A Putative TETR-family tr 46.1 7.4 0.00031 18.7 1.7 46 21-66 30-77 (211)
373 2jsc_A Transcriptional regulat 46.0 8.6 0.00036 18.3 2.0 28 26-54 27-54 (118)
374 1r1t_A Transcriptional repress 45.4 13 0.00055 17.2 2.9 24 31-54 56-79 (122)
375 2bgc_A PRFA; bacterial infecti 45.1 11 0.00048 17.6 2.5 42 33-74 168-223 (238)
376 1sgm_A Putative HTH-type trans 44.5 17 0.0007 16.6 3.8 40 21-60 11-52 (191)
377 3f6o_A Probable transcriptiona 44.3 16 0.00066 16.8 3.1 26 29-54 26-51 (118)
378 3jth_A Transcription activator 44.2 9.3 0.00039 18.1 2.0 24 31-54 33-56 (98)
379 1z4h_A TORI, TOR inhibition pr 43.9 8.9 0.00037 18.2 1.8 24 34-57 10-33 (66)
380 3m8j_A FOCB protein; all-alpha 43.5 12 0.00051 17.4 2.4 29 26-54 50-80 (111)
381 2rnj_A Response regulator prot 42.5 12 0.00051 17.4 2.3 27 30-56 40-66 (91)
382 2qko_A Possible transcriptiona 42.5 2.1 8.8E-05 22.0 -1.6 45 26-70 40-84 (215)
383 1d2z_A Death domain of pelle; 42.1 18 0.00077 16.4 4.5 46 36-81 33-81 (108)
384 1l3l_A Transcriptional activat 41.5 15 0.00064 16.8 2.7 44 31-74 185-232 (234)
385 2ia2_A Putative transcriptiona 41.4 11 0.00048 17.6 2.0 24 31-54 33-56 (265)
386 1uly_A Hypothetical protein PH 40.1 19 0.0008 16.2 3.0 26 29-54 28-53 (192)
387 2kko_A Possible transcriptiona 39.5 15 0.00065 16.8 2.5 24 31-54 35-58 (108)
388 1iuf_A Centromere ABP1 protein 38.8 4.5 0.00019 20.0 -0.4 24 32-55 28-57 (144)
389 3him_A Probable transcriptiona 38.7 2.7 0.00012 21.3 -1.5 50 23-72 25-74 (211)
390 3f6v_A Possible transcriptiona 38.2 9 0.00038 18.2 1.1 24 31-54 68-91 (151)
391 2q0o_A Probable transcriptiona 37.2 18 0.00077 16.3 2.6 45 30-74 186-234 (236)
392 1y0u_A Arsenical resistance op 36.2 23 0.00095 15.8 3.9 22 32-53 41-62 (96)
393 1d5y_A ROB transcription facto 36.1 9.9 0.00042 17.9 1.1 34 32-65 17-50 (292)
394 1c9b_A General transcription f 35.7 21 0.00088 16.0 2.7 23 32-54 157-179 (207)
395 2ev1_A Hypothetical protein RV 35.0 15 0.00064 16.8 1.9 23 35-57 79-101 (222)
396 2p4w_A Transcriptional regulat 34.4 24 0.001 15.6 3.5 24 31-54 25-48 (202)
397 1ais_B TFB TFIIB, protein (tra 34.3 21 0.0009 15.9 2.5 46 32-77 67-123 (200)
398 3clo_A Transcriptional regulat 33.7 25 0.001 15.6 2.9 44 31-74 209-256 (258)
399 2vt3_A REX, redox-sensing tran 33.7 25 0.001 15.6 4.2 73 1-76 1-83 (215)
400 1e0g_A Membrane-bound lytic mu 33.4 12 0.0005 17.5 1.1 22 33-54 9-30 (48)
401 3by6_A Predicted transcription 33.2 20 0.00084 16.1 2.2 19 36-54 37-55 (126)
402 2q1z_A RPOE, ECF SIGE; ECF sig 33.1 4.2 0.00018 20.2 -1.3 31 24-54 141-171 (184)
403 1p4x_A Staphylococcal accessor 32.7 15 0.00064 16.8 1.6 22 33-54 173-194 (250)
404 2ek5_A Predicted transcription 32.7 19 0.00081 16.2 2.1 22 33-54 26-48 (129)
405 3c3w_A Two component transcrip 30.8 28 0.0012 15.3 2.7 24 31-54 161-184 (225)
406 1qbj_A Protein (double-strande 30.4 28 0.0012 15.2 3.8 33 22-54 15-47 (81)
407 1xd7_A YWNA; structural genomi 29.4 29 0.0012 15.1 2.9 24 31-54 20-43 (145)
408 1y6u_A XIS, excisionase from t 28.9 20 0.00083 16.2 1.6 25 32-56 14-38 (70)
409 2vn2_A DNAD, chromosome replic 28.3 21 0.00089 16.0 1.7 20 35-54 52-71 (128)
410 1ylf_A RRF2 family protein; st 28.0 31 0.0013 15.0 2.6 44 32-75 28-89 (149)
411 3lwf_A LIN1550 protein, putati 27.3 29 0.0012 15.1 2.3 23 33-55 43-65 (159)
412 2wv0_A YVOA, HTH-type transcri 27.2 32 0.0014 14.9 3.2 23 32-54 31-54 (243)
413 1hw1_A FADR, fatty acid metabo 26.8 32 0.0013 14.9 2.4 22 33-54 29-51 (239)
414 3eet_A Putative GNTR-family tr 26.6 30 0.0013 15.0 2.2 22 33-54 51-73 (272)
415 3neu_A LIN1836 protein; struct 26.6 30 0.0013 15.0 2.2 23 32-54 34-57 (125)
416 3ez2_A Plasmid partition prote 26.1 19 0.0008 16.3 1.1 57 21-77 20-100 (398)
417 1v4r_A Transcriptional repress 25.5 30 0.0013 15.1 2.0 22 33-54 33-55 (102)
418 2v79_A DNA replication protein 25.4 20 0.00085 16.1 1.2 20 35-54 52-71 (135)
419 3dp7_A SAM-dependent methyltra 25.3 35 0.0015 14.7 2.4 23 33-55 49-71 (363)
420 1q1h_A TFE, transcription fact 24.2 37 0.0015 14.6 3.2 29 26-54 24-53 (110)
421 2gqq_A Leucine-responsive regu 23.4 3.2 0.00013 20.9 -3.3 29 24-52 17-45 (163)
422 2djp_A Hypothetical protein SB 23.2 23 0.00098 15.7 1.1 26 31-56 20-45 (77)
423 2vpv_A Protein MIF2, MIF2P; nu 22.7 15 0.00061 16.9 0.0 36 43-79 10-45 (166)
424 2dbf_A Nuclear factor NF-kappa 22.3 40 0.0017 14.3 3.4 45 34-81 30-74 (100)
425 1ixc_A CBNR, LYSR-type regulat 22.1 40 0.0017 14.3 3.4 20 35-54 16-35 (294)
426 3k7a_M Transcription initiatio 20.8 17 0.00071 16.6 0.0 27 30-56 288-314 (345)
427 2di3_A Bacterial regulatory pr 20.5 44 0.0018 14.1 2.4 20 34-53 27-47 (239)
428 3c7j_A Transcriptional regulat 20.2 44 0.0019 14.1 2.4 36 19-54 28-69 (237)
No 1
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A
Probab=99.64 E-value=3.6e-16 Score=115.52 Aligned_cols=64 Identities=19% Similarity=0.330 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHCCC
Q ss_conf 999999999999839949999998634299998875589-9944899999999928999996088
Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLKP 83 (83)
Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~-~~~~~~~l~~la~al~i~~~~l~~P 83 (83)
..||.+||.+|+++||||++||+++|+|+++||+||+|+ .+|++.+|.+||++|+|++.+||.+
T Consensus 9 ~~lg~rir~lR~~~gltl~eLA~~~GvS~~~lS~iE~G~~~~psl~~L~kia~aL~v~~~~l~~~ 73 (198)
T 2bnm_A 9 TGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPP 73 (198)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTGGGSCC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCCC
T ss_conf 99999999999985999999998879799999986738988998999999999979799998186
No 2
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=99.61 E-value=1.1e-15 Score=112.63 Aligned_cols=70 Identities=21% Similarity=0.421 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 898999999999999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 11 ~~~~~~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
+.++.. ...+|.+||.+|+++||||++||+++|+|.++||+||+|+.+|++.+|.+||++||+++.+||.
T Consensus 3 ~~d~~~--~~~ig~rir~~R~~~gls~~~lA~~~gvs~~~ls~iE~g~~~ps~~~l~~ia~~l~v~~~~l~~ 72 (192)
T 1y9q_A 3 LTDVMF--KSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFA 72 (192)
T ss_dssp -CHHHH--HHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGT
T ss_pred CCHHHH--HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
T ss_conf 537788--9999999999999819999999999893999999998699877634799999885568999547
No 3
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630}
Probab=99.58 E-value=3.9e-15 Score=109.40 Aligned_cols=64 Identities=13% Similarity=0.225 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCC
Q ss_conf 9999999999998399499999986342999988755899944899999999928999996088
Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 (83)
Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~P 83 (83)
..||.+||.+|+.+||||++||+.+|||+++||+||+|...|++++|.+||++|||++++||.+
T Consensus 11 ~~ig~rlk~~R~~~gltq~elA~~lgvs~s~is~~E~G~~~ps~~~l~~ia~~l~v~~~~l~~~ 74 (126)
T 3ivp_A 11 RALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLP 74 (126)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHSC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCC
T ss_conf 9999999999998499999996730999879999970777999999999999979689998288
No 4
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3}
Probab=99.57 E-value=3.5e-15 Score=109.63 Aligned_cols=64 Identities=17% Similarity=0.332 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 999999999999983994999999863--4299998875589994489999999992899999608
Q gi|254781147|r 19 RMIFVNNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 19 ~~~~g~~ir~~R~~~gltq~ela~~~g--is~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
...||.+||.+|+++||||+|||+++| ||+++||+||+|+..|++++|.+||++|||++++||.
T Consensus 6 ~~~ig~rir~~R~~~gltq~elA~~~g~~is~~~is~~E~G~~~ps~~~l~~la~~l~v~~~~LlP 71 (71)
T 2ewt_A 6 AKQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELLP 71 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHTSCGGGGCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
T ss_conf 999999999999884998999998988874799999998599667689999999998968999789
No 5
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=99.57 E-value=1.1e-14 Score=106.79 Aligned_cols=66 Identities=24% Similarity=0.473 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 999999999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 17 ~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
..+..||.+||.+|+++||||++||+.+|+|+++|++||+|+..|+++++.+||++|||++++||.
T Consensus 6 ~~~~~ig~~ir~~R~~~gltq~~lA~~~gvs~~~i~~~E~g~~~ps~~~l~~la~~l~v~~~~l~~ 71 (77)
T 2b5a_A 6 EIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFR 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 999999999999999819999999989796999999998799899999999999997988999854
No 6
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=99.56 E-value=3.8e-15 Score=109.45 Aligned_cols=64 Identities=20% Similarity=0.394 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 9999999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 19 ~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
+..||.+||.+|+.+||||+++|+++||++++||+||+|...|+++++.+||++|||++.+||.
T Consensus 26 ~~~iG~rLk~~R~~~glSq~~lA~~~gis~~~ls~~E~g~~~ps~~~l~~ia~~l~v~~~~ll~ 89 (117)
T 3f52_A 26 REALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLI 89 (117)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 9999999999999819999999988533399999998699899999999999998997999962
No 7
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=99.55 E-value=7.8e-15 Score=107.60 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 9999999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 19 ~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
+..||.+|+.+|+++||||++||+.+|||+++||+||+|++.|++++|.+||++|||++++|+.
T Consensus 7 ~~~~g~rlk~~R~~~gltq~elA~~~gvs~~~vs~~E~g~~~Ps~~~l~~ia~~l~vs~~~Ll~ 70 (114)
T 3op9_A 7 QHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVG 70 (114)
T ss_dssp CCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 9999999999999859999999761088732799996587899999999999995998999928
No 8
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=99.55 E-value=1.7e-14 Score=105.60 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 999999999999998399499999986342999988755899-94489999999992899999608
Q gi|254781147|r 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 18 ~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~-~~~~~~l~~la~al~i~~~~l~~ 82 (83)
....+|.+|+.+|+++||||.+||+.+||++++|++||+|+. +|++++|.+||++|||++.+||.
T Consensus 4 ~~~~i~~ri~~lr~~~gls~~~LA~~~Gis~~tis~~e~g~~~~p~~~~l~kia~~l~v~~~~l~~ 69 (78)
T 3b7h_A 4 DGEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDFFD 69 (78)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTCCHHHHTC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHCC
T ss_conf 799999999999999399899999988939999999986998896899999999998993999909
No 9
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=99.55 E-value=9.3e-15 Score=107.16 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 99999999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 18 ~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
.+.+||.+|+.+|+++|+||++||+.+|||+++|++||+|+..|+++++.+||++|||++.+||.
T Consensus 6 ~~~~f~~~Lk~lr~~~~lsq~elA~~lgvs~~~is~~e~G~~~ps~~~l~~la~~l~v~~~~l~~ 70 (94)
T 2kpj_A 6 QKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIE 70 (94)
T ss_dssp HHHHHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHS
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 99999999999999949989999998892883699997376799999999999998978999908
No 10
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=99.55 E-value=9.5e-15 Score=107.10 Aligned_cols=63 Identities=24% Similarity=0.447 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 999999999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 19 ~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
-..||.+||.+|+++||||.++|+.+|+|+++|++||+|+..|+++++.+||++||+++++||
T Consensus 11 ~~~ig~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~lF 73 (74)
T 1y7y_A 11 LVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELF 73 (74)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGGGC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
T ss_conf 999999999999981999999998969799999999879989999999999999893999984
No 11
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=99.53 E-value=2.5e-14 Score=104.62 Aligned_cols=63 Identities=16% Similarity=0.315 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 999999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
..+|.+||.+|+++||||++||+++|+|+++|++||+|+.+|+++++.+||++||+++.+||.
T Consensus 27 ~~ig~~Ik~lR~~~glsq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~v~~~~l~~ 89 (99)
T 3g5g_A 27 SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFE 89 (99)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 999999999999819999999999797898899998699899999999999996998999976
No 12
>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP}
Probab=99.52 E-value=3.6e-14 Score=103.66 Aligned_cols=63 Identities=16% Similarity=0.315 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 999999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
..||.+||.+|+++||||+++|+.+|+++++|++||+|+..|+++++.+||++||+++.+||.
T Consensus 10 ~~i~~~lk~~R~~~glsq~~lA~~~gis~~~i~~~E~G~~~ps~~~l~~la~~l~i~~~~l~~ 72 (82)
T 3clc_A 10 SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFE 72 (82)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCCCBHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 999999999999839999999570399887999998599899999999999997988999977
No 13
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3
Probab=99.52 E-value=1.7e-14 Score=105.62 Aligned_cols=62 Identities=23% Similarity=0.390 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 99999999999839949999998634299998875589-994489999999992899999608
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~-~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
++|.+|+.+|+++||||.+||+++|+|+++|++||+|. ..|+++++.+||++|||++++||.
T Consensus 1 iiG~rlr~lR~~~g~tq~~lA~~~Gvs~~~is~~E~G~~~~p~~~~l~~ia~~l~v~~~~l~~ 63 (111)
T 1b0n_A 1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLD 63 (111)
T ss_dssp CCHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHC
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 979999999998399999998784988999999987998999999999999998987999848
No 14
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=99.50 E-value=5.6e-14 Score=102.53 Aligned_cols=72 Identities=21% Similarity=0.310 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 898999999999999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 11 ~~~~~~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
+++........++..|+.+|++.||||.+||+.+|+|+++||+||+|...|+++.|.+||++||+++.+||.
T Consensus 7 ~~~~~~~~~~~l~~~l~~~R~~~glTQ~~lA~~lgis~~~is~~E~G~~~~s~~~l~~la~~l~v~~~~l~~ 78 (92)
T 1lmb_3 7 LTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSP 78 (92)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 998999999999999999999929999999998847898999997799899999999999998987999976
No 15
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=99.50 E-value=6.9e-14 Score=101.98 Aligned_cols=64 Identities=23% Similarity=0.366 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 9999999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 19 ~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
...+|.+|+.+|+++||||.+||+++|+++++||+||+|+..|+++.+.+||++||+++.+||.
T Consensus 12 ~~~l~~~lk~~R~~~gltq~elA~~~gvs~~~is~~E~g~~~~~~~~l~~la~~l~v~~~~l~~ 75 (83)
T 3f6w_A 12 YQALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLS 75 (83)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 9999999999999829999999989738999999998799899999999999995999999985
No 16
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=99.50 E-value=1.5e-14 Score=105.97 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 9999999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 19 ~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
+..+|++|+.+|+++||||++||+.+|+++++|++||+|+.+|+++++.+||++||+++.+||.
T Consensus 66 ~~~~G~~l~~lR~~~glTQ~elA~~~gis~~~is~iE~G~~~ps~~~l~kia~~lgvs~~el~~ 129 (141)
T 3kxa_A 66 LKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRA 129 (141)
T ss_dssp HHHSSCCHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 9999999999999829989999999896999999998799789999999999994998999986
No 17
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=99.50 E-value=1.3e-13 Score=100.32 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 98999999999999999999839949999998634299998875589-994489999999992899999608
Q gi|254781147|r 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 12 ~~~~~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~-~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
+.........||.+||.+|+ |+||.|||+++|||+++|++||+|+ .+|+++++.+||++||+++++||.
T Consensus 7 t~~~~~~~~~lG~~lr~~R~--~~s~~elA~~~gis~~~is~iE~G~~~~~s~~~l~~ia~~L~v~~~~Ll~ 76 (86)
T 2ofy_A 7 TAEELERGQRLGELLRSARG--DMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAA 76 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHT--TSCHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf 88999999999999999998--78999999997979999999986997887599999999998978999962
No 18
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=99.49 E-value=6.9e-14 Score=102.00 Aligned_cols=62 Identities=26% Similarity=0.326 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 99999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
.+|.+||.+|+.+||||+++|+.+|+++++|++||+|+..|+.+.+.+||++|++++++||.
T Consensus 5 ~ig~rlr~~R~~~glsq~~la~~~gvs~~~i~~~e~g~~~p~~~~l~~la~~l~v~~~~ll~ 66 (68)
T 2r1j_L 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLK 66 (68)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 99999999999859999999887399999999998799899999999999997997999858
No 19
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=99.48 E-value=9.9e-14 Score=101.04 Aligned_cols=72 Identities=19% Similarity=0.288 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 898999999999999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 11 ~~~~~~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
++..-+.+...++..++..|++.||||+++|+.+|+|+++|++||+|...|+++.+.+||++||+++++||.
T Consensus 2 ~t~e~~~~~~~l~~~~~~~R~~~gltq~elA~~lgvs~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~~~~~ 73 (80)
T 3kz3_A 2 LTQEQLEDARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSP 73 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCH
T ss_conf 898999999999999999999939999999662098898899998799789999999999998988999874
No 20
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=99.48 E-value=2.6e-14 Score=104.50 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHCCC
Q ss_conf 6898999999999999999999839949999998634299998875589-9944899999999928999996088
Q gi|254781147|r 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLKP 83 (83)
Q Consensus 10 ~~~~~~~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~-~~~~~~~l~~la~al~i~~~~l~~P 83 (83)
......|+-+..++..|+.+|+++||||.++|+++|+++++||+||+|+ .+|++++|.++|++||++++..+.|
T Consensus 7 ~~~~~~M~lr~~L~~~Ir~~R~~~glTQ~elA~~~gvs~~~is~iE~G~~~~~s~~~L~~ia~aLg~~v~i~~~~ 81 (83)
T 2a6c_A 7 HHHHHHMKMRSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEINIKD 81 (83)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCCCCCCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEECC
T ss_conf 410262699999999999999995999999999987789999999879999989999999999929963887238
No 21
>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A
Probab=99.48 E-value=6.1e-14 Score=102.29 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=57.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
+.+|+.+|+++||||+++|+.+|+|+++|++||+|+.+|+++++.+||++||+++++||.
T Consensus 3 ~nri~~lR~~~g~tq~~lA~~~gis~~~is~~e~g~~~ps~~~l~~ia~~l~v~~~~lf~ 62 (66)
T 1utx_A 3 INNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQ 62 (66)
T ss_dssp EECHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHHHEE
T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
T ss_conf 999999999849999999887299899999998799899999999999998977999829
No 22
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=99.48 E-value=9.3e-14 Score=101.20 Aligned_cols=62 Identities=26% Similarity=0.326 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 99999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
.+|.+||.+|+++|+||+++|+++|+++++|++||+|+..|+++.+.+||++|+|++.+||.
T Consensus 5 ~ig~rik~~R~~~glsq~~la~~~gvs~~~i~~~e~G~~~p~~~~l~~ia~~~~v~~~~ll~ 66 (76)
T 1adr_A 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLK 66 (76)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 99999999999939999999999796999999998799899999999999996988999957
No 23
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4}
Probab=99.47 E-value=3.4e-15 Score=109.72 Aligned_cols=62 Identities=21% Similarity=0.393 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 99999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
+||.+||.+|+++||||.+||+.+|||+++||+||+|+..|+.+++.+||++|||++++||.
T Consensus 1 ~iG~rik~lR~~~glsq~eLA~~~Gis~~~is~~E~G~~~ps~~~l~~la~~l~v~~~~ll~ 62 (158)
T 2p5t_A 1 MIGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDIVG 62 (158)
T ss_dssp --------------------------------------------------------------
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 97899999999849999999999895999999998799899999999999993998999836
No 24
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=99.46 E-value=1.8e-14 Score=105.46 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 99999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
.+|.+||.+|+.+||||++||+++||++++|++||+|...|+++.|.+||++|+|++++||.
T Consensus 23 ~~~~~Lk~lR~~~glTq~elA~~lgvs~~tis~~E~G~~~Ps~~~L~kla~~l~vs~~~ll~ 84 (111)
T 3mlf_A 23 NAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFL 84 (111)
T ss_dssp SSCEEHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHTCCGGGEEC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
T ss_conf 99999999999859999999999698999999998499999999999999998948999917
No 25
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=99.45 E-value=2.5e-14 Score=104.59 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 999999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
..||.+||.+|+.+||||++||+++|+|+++|++||+|...|+++++.+||++||+++..++.
T Consensus 11 ~~lg~~lr~~R~~~glsq~~lA~~~gvs~~~is~~E~g~~~ps~~~l~~ia~~lgv~~~~~~~ 73 (88)
T 2wiu_B 11 TQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDA 73 (88)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTCEEEEEC-
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf 999999999999859999999786399899999998799999999999999996994086457
No 26
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=99.45 E-value=2.8e-14 Score=104.34 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCC
Q ss_conf 999999999998399499999986342999988755899944899999999928999996088
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~P 83 (83)
.++.+|+.+|+++||||++||+.+|+++++|++||+|...|+++++.+||++|||++++||.+
T Consensus 8 ~i~~rIk~~r~~~g~tq~~lA~~lgis~~~is~~e~G~~~p~~~~l~~ia~~~~v~~~~Ll~~ 70 (73)
T 3omt_A 8 KIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELIVS 70 (73)
T ss_dssp CCCBCHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGGBCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCC
T ss_conf 999999999999399899999985998667899984988998679999999989489998165
No 27
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343}
Probab=99.44 E-value=3e-14 Score=104.08 Aligned_cols=65 Identities=18% Similarity=0.292 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 99999999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 18 ~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
....++.+|+.+|+++||||+++|+++|+++++|++||+|+..|+++++.+||++|+|++.+||.
T Consensus 7 ~~~~i~~rik~~r~~~gltq~~lA~~~gvs~~tis~~e~g~~~p~~~~l~~ia~~l~v~~~~ll~ 71 (76)
T 3bs3_A 7 NQQMMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQLIN 71 (76)
T ss_dssp ---CCCBCHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGGBC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 79999999999999909989999999888999999998599999999999999997997999966
No 28
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=99.41 E-value=1.1e-13 Score=100.70 Aligned_cols=63 Identities=17% Similarity=0.179 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 999999999999--839949999998634299998875589994489999999992899999608
Q gi|254781147|r 20 MIFVNNFRNIRK--EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 20 ~~~g~~ir~~R~--~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
..+|.+|+.+|+ ++||||+|||+.+|||+++||+||+|+..|++++|.+||++|||++..++.
T Consensus 33 ~~iG~~I~~~R~~~~kglTQ~eLA~~lgvs~~~is~~E~G~~~ps~~~l~kia~~L~V~L~~~~~ 97 (107)
T 2jvl_A 33 KEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRGANI 97 (107)
T ss_dssp HHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTTTCBSSSSST
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999998869989999999887899999998599789999999999994996766548
No 29
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi}
Probab=99.41 E-value=7.4e-13 Score=95.85 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC--CHHHHC
Q ss_conf 9999999999999983994999999863429999887558999448999999999289--999960
Q gi|254781147|r 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT--PLWKLL 81 (83)
Q Consensus 18 ~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i--~~~~l~ 81 (83)
+...||.+||.+|+++||||++||+++|+|+++||+||+|..+|+++++.+||++|++ .+.+++
T Consensus 11 ~~~~lg~~lk~~R~~~gltq~elA~~lgvs~~~is~~E~G~~~~~~~~l~~i~~aL~~~~~~~~~~ 76 (86)
T 3eus_A 11 EHVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEGLDVVSEIV 76 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHH
T ss_conf 999999999999998499999999997969999999988999999999999999908976199999
No 30
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A
Probab=99.41 E-value=4.5e-13 Score=97.17 Aligned_cols=60 Identities=20% Similarity=0.159 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 999999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
-|..|+.+|+++||||.+||+.+|||+++||+||+|++.|+.+.+.+||++||++++.|+
T Consensus 9 PG~~Lk~~r~~~gltq~~lA~~lgvs~~~is~~e~G~~~~s~~~~~~la~~lgvs~~~ll 68 (94)
T 2ict_A 9 PGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWL 68 (94)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 899999999996999999999849638998698727644729999999999990999997
No 31
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=99.40 E-value=2.1e-13 Score=99.08 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 9999999999998399499999986342999988755899944899999999928999996
Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 (83)
Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l 80 (83)
..||.+|+.+|+.+||||++||+.+||++++|++||+|+.+|+++++.+||++|||++...
T Consensus 12 ~~ig~~ik~~R~~~glsq~elA~~~gvs~~~is~~E~G~~~p~~~~l~kia~~L~v~L~~~ 72 (91)
T 1x57_A 12 LEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGK 72 (91)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSST
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 9999999999998199899999871989999999987998899999999999949986455
No 32
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=99.39 E-value=4.8e-13 Score=96.99 Aligned_cols=60 Identities=28% Similarity=0.305 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 9999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
+|.+|+.+|+.+||||.+||+.+|+++++|++||+|+ .|+.+++.+||++|+|++++||.
T Consensus 2 ig~rik~~R~~~gltq~elA~~~gis~~~~~~~e~g~-~~~~~~l~~ia~~l~v~~~~l~~ 61 (69)
T 1r69_A 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGK-TKRPRFLPELASALGVSVDWLLN 61 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTS-CSSCTTHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCC-CCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 8999999999949999999886398999999998699-98999999999996988999828
No 33
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=99.37 E-value=3.9e-13 Score=97.50 Aligned_cols=60 Identities=27% Similarity=0.293 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf 999999999999983994999999863429999887558999448999999999289999
Q gi|254781147|r 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 (83)
Q Consensus 19 ~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~ 78 (83)
...||.+|+.+|+++||||+|||+.+|+++++||+||+|..+|+++++.+||++||+++.
T Consensus 8 ~~~l~~~lk~~R~~~gltq~elA~~~gvs~~~is~~E~G~~~~s~~~l~~i~~~lg~~~~ 67 (84)
T 2ef8_A 8 YRCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLG 67 (84)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 999999999999994999999999974799999999879999999999999999489858
No 34
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=99.37 E-value=8.6e-13 Score=95.49 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 99999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
.+|.+|+.+|+++||||.|+|+.+|+|+++|++||+|+..|+ +++.+||++|||++.+|+.
T Consensus 3 ~i~~rik~~r~~~gltq~elA~~~gis~~~is~~e~g~~~~~-~~l~~ia~~l~v~~~~Ll~ 63 (71)
T 1zug_A 3 TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRP-RFLFEIAMALNCDPVWLQY 63 (71)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSC-STHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCH-HHHHHHHHHHCCCHHHHHC
T ss_conf 899999999999399999997841989999999987999999-9999999994997999841
No 35
>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102}
Probab=99.34 E-value=2.4e-12 Score=92.87 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 9999999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
.-|..|+.+|+++||||.+||+.+|+|+++||+||+|++.|+.+.+.+|+++||++++.|+
T Consensus 18 hPGe~Lke~~~~~gisq~eLA~~lGvs~~~is~~e~G~~~~s~~~a~~La~~lgvs~~~~l 78 (104)
T 3cec_A 18 HPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLWL 78 (104)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 8349999999987998999999978378999999758878989999999999891999998
No 36
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A
Probab=99.32 E-value=1.4e-12 Score=94.14 Aligned_cols=62 Identities=11% Similarity=0.036 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHCCCHHHHCCC
Q ss_conf 9999999999839949999998634299998875-5899944899999999928999996088
Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGKSTINIDNMIILAHTLDTPLWKLLKP 83 (83)
Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE-~G~~~~~~~~l~~la~al~i~~~~l~~P 83 (83)
.+..|+..|+++|||+++||+++|+|.++||+|| +|+.+|++++|.+||++|+|++.+||.+
T Consensus 231 ~~slLk~~rk~RGLTL~eLAkrTGIS~S~LSqIERngks~PSl~tL~KIA~AL~V~lsdLf~~ 293 (443)
T 3g7d_A 231 AGSVLDLFLARRAHTRTSAAEAAGVPPADLEAALRSPASETGLTVLRTLGRALGFDYRVLLPA 293 (443)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCTTSHHHHHHHHHHHHHHTCCGGGGSCC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHCCC
T ss_conf 689999999971888999998869899999999856888988999999999729999997488
No 37
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} SCOP: a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A 2grl_A 2grm_A
Probab=99.30 E-value=4.9e-12 Score=91.00 Aligned_cols=60 Identities=15% Similarity=0.289 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 9999999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
.+|..+|.+|+++|+||+++|+. ++|++++|+||+|+..|+++.|..|++.+||++++|+
T Consensus 3 ~iG~~~k~~R~~~~ltq~~~a~~-~~s~s~ls~~E~g~~~~s~~~l~~l~~~l~v~~~ef~ 62 (317)
T 2awi_A 3 KIGSVLKQIRQELNYHQIDLYSG-IMSKSVYIKVEADSRPISVEELSKFSERLGVNFFEIL 62 (317)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHTT-TSCHHHHHHHHTTCSCCBHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHC-CCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 88999999999879989999662-8999999999889987999999999998599999998
No 38
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=99.26 E-value=1.8e-12 Score=93.62 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC--CHHHHC
Q ss_conf 9999999999983994999999863429999887558999448999999999289--999960
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT--PLWKLL 81 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i--~~~~l~ 81 (83)
.||.+|+.+|+.+||||++||+++|||+++|++||+|.+.|+++.+.+|+.++++ ...+|+
T Consensus 4 ~ig~rik~~R~~~gltq~elA~~~Gis~~tis~~E~g~~~p~~~~l~~ia~~~~~~~~~~wll 66 (99)
T 2l49_A 4 TISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTLWFM 66 (99)
T ss_dssp CTTHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHTTTSSCCCHHHHHHHHSSSSSSSSSSTTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHH
T ss_conf 999999999999399999999996989999999987998799899999986037786478885
No 39
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=99.23 E-value=5.4e-12 Score=90.73 Aligned_cols=71 Identities=21% Similarity=0.317 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 89899999999999999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 11 ~~~~~~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
+++..+...+.+...++..|+++||||++||+.+|+++++||+||+|...|+.++|.+||++|++++.+|+
T Consensus 7 ~~~~~~~~~~rLk~l~~~~r~e~Glsq~elA~~~Gis~~tis~~e~G~~~~~~~~l~~ia~~l~v~~~~l~ 77 (236)
T 3bdn_A 7 LTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFS 77 (236)
T ss_dssp CCSHHHHHHHHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTTTSCCCHHHHHHTTTTTTSCGGGTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCEEEEEHHC
T ss_conf 99999999999999999999983999999999979799999888728524679999975220278512110
No 40
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovarisraelensis atcc 35646}
Probab=99.23 E-value=2.1e-12 Score=93.20 Aligned_cols=61 Identities=25% Similarity=0.306 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 99999999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
..+|..||.+|+++||||++||+-. +|++++|+||+|+..|+++++..|++.+|+++.+|+
T Consensus 4 ~~iG~~lk~~R~~~~ltq~~la~~i-~S~s~lSkiE~g~~~ps~~~l~~l~~~l~i~~~~~~ 64 (293)
T 2qfc_A 4 EKLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFY 64 (293)
T ss_dssp HHHHHHHHHHHHHHTCCTTTTTTTT-SCHHHHHHHHTSSSCCCHHHHHHHTTTSCCCTHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHCC-CCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 8999999999998799999985215-899999999889999999999999988599789987
No 41
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=99.11 E-value=1.1e-10 Score=82.91 Aligned_cols=64 Identities=19% Similarity=0.128 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH------HHHHHHHHHCCCHHHHCC
Q ss_conf 9999999999999839949999998634299998875589994489------999999992899999608
Q gi|254781147|r 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID------NMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 19 ~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~------~l~~la~al~i~~~~l~~ 82 (83)
...+|..||.+|+.+||||+|||+.+||+.++|+.||+|...+... .|.++|++||+++.+++.
T Consensus 5 ~~~iG~~Lr~~R~~~glS~~elA~~l~Is~~~l~~iE~g~~~~~~~~~~~~g~lr~ya~~Lgld~~~l~~ 74 (112)
T 2wus_R 5 WKELGETFRKKREERRITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELSPDEMLK 74 (112)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHSSCCHHHHHHHHHTCCTTSSCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 9999999999999969999999999856899999988789533765228999999999996979999999
No 42
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} SCOP: a.35.1.13
Probab=99.08 E-value=8.8e-11 Score=83.56 Aligned_cols=68 Identities=18% Similarity=0.290 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 999999999999999999839949999998634299998875589-99448999999999289999960
Q gi|254781147|r 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 14 ~~~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~-~~~~~~~l~~la~al~i~~~~l~ 81 (83)
+.+..+..++..|+.+|+++||||+++|+++|++++.||++|+|+ .++++++|.+++.+||..+.--+
T Consensus 33 eel~~K~~L~~~I~~~i~~~glTQ~eaA~~lGisq~~iS~l~~Gk~~~~Sld~L~~~~~~LG~~v~i~i 101 (120)
T 2o38_A 33 EERQTKLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEIVI 101 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 999999999999999999869967556555088889989997588678889999999998599389999
No 43
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=99.07 E-value=6.7e-11 Score=84.26 Aligned_cols=60 Identities=27% Similarity=0.189 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 9999999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
.++..|+.+|++.||||+++|+.+|||+++|++||+|+..|+.. +.++++.|++.+..|.
T Consensus 11 ~~p~~ik~~R~~~gltQ~elA~~lgvs~~ti~~~E~G~~~P~~~-~~~l~~~l~~~P~~l~ 70 (73)
T 3fmy_A 11 VAPEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPS-TIKLLRVLDKHPELLN 70 (73)
T ss_dssp CCHHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTSSCCCHH-HHHHHHHHHHCGGGHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH-HHHHHHHHCCCHHHHH
T ss_conf 59999999999859999999999897999999999799799999-9999999877918888
No 44
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=98.97 E-value=7.7e-10 Score=77.96 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=53.4
Q ss_pred HHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 99999-999983994999999863429999887558999448999999999289999960
Q gi|254781147|r 23 VNNFR-NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 23 g~~ir-~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
|..|+ .+++..||||.+||+.+|||+++||+|++|++.++.+.+.+|+++||++.+.++
T Consensus 12 GeiL~~e~L~~~gisq~~LA~~lgvs~~~is~i~~Gk~~it~~~a~rL~~~fg~s~~~wl 71 (113)
T 2eby_A 12 GDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWL 71 (113)
T ss_dssp HHHHHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 199999988766999999999969899999999938778999999999999895899999
No 45
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=98.93 E-value=7.8e-10 Score=77.92 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 9999999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
.++..||.+|+..||||++||+++||++++|++||+|+..|+...+. ++..+...+..+|
T Consensus 30 ~~~~~ik~~R~~~gltq~~lA~~lgvs~~ti~~~E~G~~~P~~~~~~-ll~~i~~~Pe~~~ 89 (99)
T 2ppx_A 30 PRMPRIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPARA-YLKIIAVDPEGTA 89 (99)
T ss_dssp --CCHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHH-HHHHHHHCHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHH-HHHHHHCCHHHHH
T ss_conf 65899999999959999999999698899999998899869999999-9999874979999
No 46
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=98.86 E-value=4.4e-09 Score=73.46 Aligned_cols=58 Identities=19% Similarity=0.070 Sum_probs=52.8
Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 999999998399-49999998634299998875589994489999999992899999608
Q gi|254781147|r 24 NNFRNIRKEAKL-TQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 24 ~~ir~~R~~~gl-tq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
..|+++++..|+ ||.+||+++||++++|++||+|...|. +.+.++|++|++++.+|+.
T Consensus 9 e~l~Rl~~~~g~~sq~eLA~~lGvs~stis~~e~~~~~p~-~~l~~ia~~~gv~~~~l~~ 67 (189)
T 2fjr_A 9 DVLDRICEAYGFSQKIQLANHFDIASSSLSNRYTRGAISY-DFAAHCALETGANLQWLLT 67 (189)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHTTCCHHHHHHHHHSSSCCH-HHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCH-HHHHHHHHHHCCCHHHHCC
T ss_conf 9999999982998799999997979999999982899977-8999999880998345116
No 47
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=98.82 E-value=8.7e-09 Score=71.69 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CC----HHHHHHHHHHHCCCHHHHC
Q ss_conf 9999999999983994999999863429999887558999--44----8999999999289999960
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST--IN----IDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~--~~----~~~l~~la~al~i~~~~l~ 81 (83)
.+|+.||.+|+++|+|++|+|+.++|+.++|..||+|... |+ ...+..+|+.||++.++++
T Consensus 3 tiG~~Lr~~R~~~glSi~eva~~l~I~~~~l~aiE~g~~~~lp~~~~~~g~lr~ya~~L~ld~~~ll 69 (130)
T 3fym_A 3 TVGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPNQLI 69 (130)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHTTCGGGSSSGGGHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 7999999999996999999999975149999999848854567708999999999999395999999
No 48
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B*
Probab=98.81 E-value=2.1e-09 Score=75.33 Aligned_cols=56 Identities=27% Similarity=0.197 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf 999999999983994999999863429999887558999448999999999289999
Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 (83)
Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~ 78 (83)
.+..||.+|+..||||+++|+++|+|.++|++||+|...|+... .++++.++..+.
T Consensus 72 ~~e~ir~~R~~~glsQ~elA~~lg~~~~ti~~~E~G~~~p~~~~-~~l~~~l~~~p~ 127 (133)
T 3o9x_A 72 APEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPST-IKLLRVLDKHPE 127 (133)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHHTSSCCCHHH-HHHHHHHHHCGG
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH-HHHHHHHCCCCH
T ss_conf 99999999998499999999995999999999986998899999-999999843854
No 49
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=98.66 E-value=2.2e-08 Score=69.28 Aligned_cols=48 Identities=13% Similarity=0.111 Sum_probs=42.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 999999999839949999998634299998875589994489999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la 70 (83)
.+.|+.+|++.||||+++|+.+|||+++|++||+|++.++......+.
T Consensus 92 ~e~i~~~R~~~glsQ~~lA~~lGvs~~ti~~~E~G~r~ip~~i~La~l 139 (170)
T 2auw_A 92 HEMFGDWMHRNNLSLTTAAEALGISRRMVSYYRTAHKIIPRTIWLACL 139 (170)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 999999999869999999999599999999997799999989999997
No 50
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=98.38 E-value=1e-06 Score=59.48 Aligned_cols=63 Identities=19% Similarity=0.301 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 999999999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 19 ~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
+..+...|..+|.++|||++++|+.+|.|..+++.++.|+...+-+...+++++|+++-+.+.
T Consensus 11 r~elte~Il~AK~~KGlTwe~IAe~vG~S~v~vaaa~lGQ~~l~~e~A~~l~~~LgL~~e~~~ 73 (156)
T 1dw9_A 11 RLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSIL 73 (156)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 899999999999984999999999979799999999845777998999999985499999999
No 51
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution; 1.40A {Xylella fastidiosa ann-1}
Probab=96.47 E-value=0.0022 Score=39.63 Aligned_cols=46 Identities=15% Similarity=0.103 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC--CCHHHHC
Q ss_conf 9499999986342999988755899944899999999928--9999960
Q gi|254781147|r 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD--TPLWKLL 81 (83)
Q Consensus 35 ltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~--i~~~~l~ 81 (83)
=+|.+||+.+|||+++|++|-+|. .++.+....|+++.+ |+.++|.
T Consensus 12 G~q~~lAr~lGVsq~aVs~W~~~~-~vP~~~~~~Ie~aT~g~Vt~~eLr 59 (79)
T 3bd1_A 12 GSVSALAASLGVRQSAISNWRARG-RVPAERCIDIERVTNGAVICRELR 59 (79)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHT-CCCGGGHHHHHHHTTTSSCHHHHC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCC-CCCHHHHHHHHHHHCCCCCHHHHC
T ss_conf 899999999299999999998469-999999999999978953199849
No 52
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=96.44 E-value=0.0028 Score=38.99 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=38.1
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH---HHHHHCC
Q ss_conf 998399499999986342999988755899944899999---9999289
Q gi|254781147|r 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII---LAHTLDT 75 (83)
Q Consensus 30 R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~---la~al~i 75 (83)
...+..|++|+|+.+|||.+|+|++-||...++-++-.+ +|+.+|.
T Consensus 6 ~~~k~vTikdIA~~agVS~aTVSr~Ln~~~~vs~~tr~rV~~~a~~lgY 54 (344)
T 3kjx_A 6 DTKRPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELGY 54 (344)
T ss_dssp ----CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999976999999989599999999789899999999999999999599
No 53
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=96.43 E-value=0.013 Score=35.05 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 9999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
+...++.-|....+|.+.+|+.+|||++.+..||.....|-+-....+.+.-|+.+..||.
T Consensus 3 lsnelkverirlsltaksvaeemgisrqqlcnieqsetapvvvkyiaflrskgvdlnalfd 63 (77)
T 2k9q_A 3 LSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNALFD 63 (77)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCEEEEEEEEEEHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 5420123566775226778998484598834741136577348889999863875899999
No 54
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=96.31 E-value=0.011 Score=35.38 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=46.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 99999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
..|+..-..+|+|..+||...|++.++++..-. .|....=..||++||+++.+++-
T Consensus 12 adI~AaL~krG~sLa~lsr~~Gls~~tl~nal~---rp~pkgEriIA~aLGv~P~eIWP 67 (74)
T 1neq_A 12 ADVIAGLKKRKLSLSALSRQFGYAPTTLANALE---RHWPKGEQIIANALETKPEVIWP 67 (74)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTT---SSCHHHHHHHHHHTTSCHHHHCT
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC---CCCCHHHHHHHHHHCCCHHHHCC
T ss_conf 999999999689699999990998899999882---77807999999997859889496
No 55
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transcription regulation; NMR {Escherichia coli K12} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=96.26 E-value=0.0042 Score=37.94 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCC---CCHH---HHHHHHHHHCCCH
Q ss_conf 94999999863429999887558999---4489---9999999928999
Q gi|254781147|r 35 LTQKEIRNRTGFAQSWISELETGKST---INID---NMIILAHTLDTPL 77 (83)
Q Consensus 35 ltq~ela~~~gis~~~is~iE~G~~~---~~~~---~l~~la~al~i~~ 77 (83)
+|.+|+|+.+|+|.+++|++-||... ++-+ .+...++.+|..+
T Consensus 1 vTlkdIA~~aGVS~sTVSrvLng~~~~~~Vs~~Tr~rV~~~a~~lgY~p 49 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHP 49 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9799999998859999999985999878779999999999999988897
No 56
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=96.10 E-value=0.0077 Score=36.40 Aligned_cols=43 Identities=9% Similarity=0.126 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH---HHHHHCCC
Q ss_conf 99499999986342999988755899944899999---99992899
Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMII---LAHTLDTP 76 (83)
Q Consensus 34 gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~---la~al~i~ 76 (83)
+.|.+|+|+.+|||.+|+|++-||+..++-++-.+ .++-+|..
T Consensus 2 ~vTi~dIA~~aGVS~~TVSr~Ln~~~~vs~~tr~kV~~~a~elgY~ 47 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYR 47 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 7679999999897999999997895999999999999999996898
No 57
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=95.98 E-value=0.0043 Score=37.92 Aligned_cols=46 Identities=15% Similarity=0.178 Sum_probs=37.8
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHCC
Q ss_conf 998399499999986342999988755899944899---9999999289
Q gi|254781147|r 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN---MIILAHTLDT 75 (83)
Q Consensus 30 R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~---l~~la~al~i 75 (83)
++.+.-|.+|+|+.+|||++|+|++-||+..++-++ +.++++.||.
T Consensus 5 ~~~~~~Tl~diA~~agVS~~TVsraLn~~~~vs~~tr~rV~~~a~~lgY 53 (366)
T 3h5t_A 5 RKQQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGY 53 (366)
T ss_dssp --CCTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999863999999988799999999689899999999999999998399
No 58
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=95.92 E-value=0.0089 Score=36.03 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999983994999999863429999887558
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G 57 (83)
.+|..... ..+.|+||+++|+++|+|+++||++-+-
T Consensus 12 E~g~~~~~-l~~~g~tQ~elAe~lg~Srs~Vsr~lrl 47 (192)
T 1zx4_A 12 EIGLRLMR-MKNDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp HHHHHHHH-HHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHH-HHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999-9985999999999988799999999999
No 59
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=95.63 E-value=0.044 Score=31.90 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 999999999999839949999998634299998875589994489
Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 (83)
Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~ 64 (83)
..|+..|+..+...|++|..++..+|+|+++||++++........
T Consensus 30 ~~~a~eIk~~L~~~~i~q~~~~~~~g~SqSsiS~~L~~~~~~~~~ 74 (221)
T 2h8r_A 30 WRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQ 74 (221)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHTTCCCCCHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 999999999998669845553001244443788987189853440
No 60
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=95.61 E-value=0.013 Score=34.98 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHCCCH
Q ss_conf 499999986342999988755899944899---999999928999
Q gi|254781147|r 36 TQKEIRNRTGFAQSWISELETGKSTINIDN---MIILAHTLDTPL 77 (83)
Q Consensus 36 tq~ela~~~gis~~~is~iE~G~~~~~~~~---l~~la~al~i~~ 77 (83)
|.+|+|+.+|||.+|+|++-||+..++-++ +.++++-+|..+
T Consensus 2 Ti~DIA~~aGVS~~TVSraLn~~~~vs~~tr~rV~~~a~elgY~p 46 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSP 46 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 689999998969999999967979999999999999999958988
No 61
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=95.12 E-value=0.0029 Score=38.88 Aligned_cols=48 Identities=10% Similarity=0.130 Sum_probs=37.7
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH---HHHHHHCCCH
Q ss_conf 99839949999998634299998875589994489999---9999928999
Q gi|254781147|r 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI---ILAHTLDTPL 77 (83)
Q Consensus 30 R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~---~la~al~i~~ 77 (83)
...+..|.+|+|+.+|||.+|+|++-||+..++-++-. ++++-||..+
T Consensus 8 ~~~k~vTikdIA~~aGVS~~TVSr~Ln~~~~Vs~~Tr~rV~~~a~elgY~p 58 (355)
T 3e3m_A 8 PGHRPVTMRDVAKAAGVSRMTVSRALKKDSPISSETRERILKVVKDMNYVP 58 (355)
T ss_dssp ---------------------------------------------------
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 999997699999998859999999968989999999999999999959973
No 62
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=94.67 E-value=0.0046 Score=37.73 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=36.5
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHCCCH
Q ss_conf 98399499999986342999988755899944899---999999928999
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN---MIILAHTLDTPL 77 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~---l~~la~al~i~~ 77 (83)
+...-|.+|+|+++|||.+|+|++-||...++-++ +.++++-+|..+
T Consensus 5 ~k~r~Ti~dIA~~aGVS~~TVSr~Ln~~~~Vs~~tr~rV~~~a~~lgY~p 54 (348)
T 3bil_A 5 EKFRPTLKDVARQAGVSIATASRALADNPAVAASTRERIQQLASDLGYRA 54 (348)
T ss_dssp --------------------------------------------------
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89997399999998869999999968989999999999999999958987
No 63
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=94.62 E-value=0.03 Score=32.91 Aligned_cols=55 Identities=25% Similarity=0.300 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-----HCCCCCCCHH--------HHHHHHHHHCC
Q ss_conf 9999999999983994999999863429999887-----5589994489--------99999999289
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL-----ETGKSTINID--------NMIILAHTLDT 75 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~i-----E~G~~~~~~~--------~l~~la~al~i 75 (83)
.+..++-++-...|+||.|.|+++|+|++++|++ |.|-..++++ .-..|.+.||+
T Consensus 8 ~ll~~vA~lYY~~g~tQ~eIA~~lgiSR~~VsRlL~~Ar~~GiV~I~I~~~~~~~~~Le~~L~~~fgL 75 (315)
T 2w48_A 8 RLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYDYNENLWLEQQLKQKFGL 75 (315)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999999998249999999998795999999999999975937999948974419999999997299
No 64
>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=94.32 E-value=0.0061 Score=36.99 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHCCCH
Q ss_conf 99499999986342999988755899944899---999999928999
Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDN---MIILAHTLDTPL 77 (83)
Q Consensus 34 gltq~ela~~~gis~~~is~iE~G~~~~~~~~---l~~la~al~i~~ 77 (83)
.-|.+|+|+.+|||.+|+|++-||+..++-++ +.++++-+|..+
T Consensus 3 ~~Ti~DIA~~aGVS~~TVSrvLn~~~~vs~~tr~rI~~~a~elgY~p 49 (338)
T 3dbi_A 3 LTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRP 49 (338)
T ss_dssp -----------------------------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 78899999997979999999968979999999999999999948987
No 65
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=94.26 E-value=0.0064 Score=36.87 Aligned_cols=46 Identities=9% Similarity=0.072 Sum_probs=36.2
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH---HHHHHHHCCCH
Q ss_conf 83994999999863429999887558999448999---99999928999
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM---IILAHTLDTPL 77 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l---~~la~al~i~~ 77 (83)
..+.|.+|+|+.+|||.+|+|++-||+..++-++- .++++.+|..+
T Consensus 2 ~m~vTi~dIA~~aGVS~~TVSraLn~~~~Vs~~tr~rI~~~a~~lgY~p 50 (339)
T 3h5o_A 2 SLGVTMHDVAKAAGVSAITVSRVLNQPQQVSEQLREKVMQAVDALAYVP 50 (339)
T ss_dssp -------------------------------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9731199999998979999999968989999999999999999978975
No 66
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=94.17 E-value=0.0069 Score=36.69 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHCCCH
Q ss_conf 399499999986342999988755899944899---999999928999
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDN---MIILAHTLDTPL 77 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~iE~G~~~~~~~~---l~~la~al~i~~ 77 (83)
++.|.+|+|+.+|||.+|+|++-||+..++-++ +.++++-+|..+
T Consensus 2 kk~Ti~dIA~~aGVS~sTVSraLn~~~~Vs~~tr~rV~~~a~~lgY~p 49 (349)
T 1jye_A 2 KPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIP 49 (349)
T ss_dssp ------------------------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 977699999998869999999967969999999999999999978985
No 67
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=93.78 E-value=0.08 Score=30.36 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHCCC--CHHHHHHHHHH-HHHHHHHH
Q ss_conf 9999999999999998399--49999998634-29999887
Q gi|254781147|r 17 RERMIFVNNFRNIRKEAKL--TQKEIRNRTGF-AQSWISEL 54 (83)
Q Consensus 17 ~~~~~~g~~ir~~R~~~gl--tq~ela~~~gi-s~~~is~i 54 (83)
++++++ ..|+.++++.|+ |+.|+|+.+|+ |.+++.++
T Consensus 7 kq~~il-~~I~~~~~~~g~~PS~~Eia~~~GikS~s~v~~~ 46 (202)
T 1jhf_A 7 RQQEVF-DLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEH 46 (202)
T ss_dssp HHHHHH-HHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHH
T ss_conf 999999-9999999982989669999998499972899999
No 68
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis}
Probab=93.70 E-value=0.0095 Score=35.85 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=36.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH---HHHHHHHCCCH
Q ss_conf 83994999999863429999887558999448999---99999928999
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM---IILAHTLDTPL 77 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l---~~la~al~i~~ 77 (83)
+...|.+|+|+.+|||.+|+|++-||...++-++- ..+++.||..+
T Consensus 3 ~~~~Ti~DIA~~aGVS~~TVSraLn~~~~vs~~tr~rV~~~a~~lgY~p 51 (332)
T 2o20_A 3 ESTTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRP 51 (332)
T ss_dssp -------------------------------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 8987699999997979999999968969999999999999999958976
No 69
>1jhg_A Trp operon repressor; complex (regulatory protein/peptide), DNA-binding regulatory protein; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 1trr_A* 1tro_A*
Probab=93.65 E-value=0.098 Score=29.84 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHH-HHCC-CCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999-9839-94999999863429999887558
Q gi|254781147|r 17 RERMIFVNNFRNIR-KEAK-LTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 17 ~~~~~~g~~ir~~R-~~~g-ltq~ela~~~gis~~~is~iE~G 57 (83)
.+...++.+++.++ ...| +||.++++.+|+|.++|+++-+-
T Consensus 39 ~E~~~la~R~~ia~~L~~g~~s~reI~~~~gvS~aTItR~s~~ 81 (101)
T 1jhg_A 39 DEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNS 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999999999999908957999999969865777898999
No 70
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=93.47 E-value=0.12 Score=29.25 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999-983994999999863429999887558
Q gi|254781147|r 17 RERMIFVNNFRNIR-KEAKLTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 17 ~~~~~~g~~ir~~R-~~~gltq~ela~~~gis~~~is~iE~G 57 (83)
.+...++.++..++ ...|.|+.++++.+|+|.++|+++-+-
T Consensus 40 ~E~~~la~R~~va~lL~~g~syreIa~~~gvS~aTIsRv~r~ 81 (107)
T 3frw_A 40 NELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISRVNRS 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999999999886999999999969874758999999
No 71
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=93.27 E-value=0.13 Score=29.20 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999-983994999999863429999887558
Q gi|254781147|r 17 RERMIFVNNFRNIR-KEAKLTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 17 ~~~~~~g~~ir~~R-~~~gltq~ela~~~gis~~~is~iE~G 57 (83)
.+...+++++..++ ...|.|+.++++.+|+|.++|+++-+-
T Consensus 57 ~E~~~la~R~~Va~lL~~g~syreIa~~tgvS~aTIsRV~r~ 98 (119)
T 3kor_A 57 NEIQSLSQRLQVAKMIKQGYTYATIEQESGASTATISRVKRS 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999999999885999999999969874547999999
No 72
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=93.21 E-value=0.013 Score=35.08 Aligned_cols=46 Identities=22% Similarity=0.194 Sum_probs=36.5
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHCCCH
Q ss_conf 8399499999986342999988755899944899---999999928999
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDN---MIILAHTLDTPL 77 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~---l~~la~al~i~~ 77 (83)
....|.+|+|+.+|||.+|+|++-|++..++-++ +..+++.+|...
T Consensus 4 ~~k~Ti~diA~~aGVS~aTVSr~Ln~~~~Vs~~tr~rV~~aae~lgY~p 52 (333)
T 3jvd_A 4 SAKSSLKEVAELAGVGYATASRALSGKGYVSPQTREKVQAAAKELNYVP 52 (333)
T ss_dssp -------------------------------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9998799999998979999999968979999999999999999959973
No 73
>2ox6_A Hypothetical protein SO3848; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 1.70A {Shewanella oneidensis mr-1} SCOP: a.35.1.6
Probab=93.19 E-value=0.29 Score=27.00 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=39.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 999999999839949999998634299998875589994489999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la 70 (83)
+-.++.+|...|+|.+++++..+.|..-+-.||.|....+...-.++.
T Consensus 9 aiei~ylr~slglt~aqv~e~~k~se~dv~aweage~~~~~laqkkll 56 (166)
T 2ox6_A 9 AIEMSYLRQSLSLSAAQVGQLTNHSEAEVLAWENAETQAPELAQKKLL 56 (166)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 575999999707889998887445777755355068868607787551
No 74
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=93.13 E-value=0.14 Score=28.92 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=48.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 969888888689899999999999999999--9839949999998634299998875589994489999999
Q gi|254781147|r 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIR--KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 (83)
Q Consensus 1 Mp~~~~~~p~~~~~~~~~~~~~g~~ir~~R--~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la 70 (83)
||++....|...........++..-++.+. --.+.|..++|+.+|||++++..+..+|...=...+....
T Consensus 1 m~~~~~~~pr~~~~~~~R~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~~lY~~F~sK~~L~~al~~~~~ 72 (216)
T 2oi8_A 1 MPEARTSTPRERYRTQVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYRYFDGRDELITELIRDAY 72 (216)
T ss_dssp -------CCSSCCHHHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 968999998632279999999999999999709653889999999797988999887999999999999999
No 75
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=93.08 E-value=0.069 Score=30.74 Aligned_cols=56 Identities=5% Similarity=-0.008 Sum_probs=36.4
Q ss_pred HHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHCC------------C-CCCCHHHHHHHHHHHCCCH
Q ss_conf 999999999-983994999999863429999887558------------9-9944899999999928999
Q gi|254781147|r 22 FVNNFRNIR-KEAKLTQKEIRNRTGFAQSWISELETG------------K-STINIDNMIILAHTLDTPL 77 (83)
Q Consensus 22 ~g~~ir~~R-~~~gltq~ela~~~gis~~~is~iE~G------------~-~~~~~~~l~~la~al~i~~ 77 (83)
-|....++- ...++||+++|+++|+|+++|+++-+= . ..++......|...++-.-
T Consensus 29 ~a~~y~rlL~~~~~~tq~eLA~~lG~Srs~VS~~L~l~~LP~~I~~~~~~~~~is~~~a~~L~~l~~~~~ 98 (189)
T 3mky_B 29 RGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPGELSARSGDALQKAFTDKE 98 (189)
T ss_dssp HHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHHHSCHHHHHTSSSGGGSCHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCH
T ss_conf 9999999998643888999999979799999999988658999999975449879899999980410068
No 76
>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf}
Probab=92.83 E-value=0.016 Score=34.56 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH---HHHHHHHCCCH
Q ss_conf 4999999863429999887558999448999---99999928999
Q gi|254781147|r 36 TQKEIRNRTGFAQSWISELETGKSTINIDNM---IILAHTLDTPL 77 (83)
Q Consensus 36 tq~ela~~~gis~~~is~iE~G~~~~~~~~l---~~la~al~i~~ 77 (83)
|.+|+|+++|||.+|+|++-||...++-++- .++++.+|..+
T Consensus 4 tikdIA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~p 48 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNNTGYVSEDAREKIQKVVDELNYTP 48 (330)
T ss_dssp ---------------------------------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 899999998969999999968979999999999999999958987
No 77
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=92.56 E-value=0.14 Score=28.93 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999998399499999986342999988755
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~ 56 (83)
..+..++.+- ..|+||+++|+++|.|++||+++-+
T Consensus 40 e~A~~~~~l~-~~g~t~~~iA~~lg~s~~~V~~~l~ 74 (178)
T 1r71_A 40 EIADFIGREL-AKGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp HHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999999-8178899999996999999999999
No 78
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=92.35 E-value=0.41 Score=26.14 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCCCC------HHHHHHHHHHHCCCHHH
Q ss_conf 9999999999998399499999986-342999988755899944------89999999992899999
Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKSTIN------IDNMIILAHTLDTPLWK 79 (83)
Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~~~~~------~~~l~~la~al~i~~~~ 79 (83)
..++.+|+...+..+++|+-+|+.+ |.|+.++|.+-+.+.+|. .+++.++-+.|+.|-.+
T Consensus 20 ~~ia~~i~~eL~~~~I~Q~~FAk~VL~rSQGtLSdLLr~~~~PkPw~ksgre~~~rm~~wL~lPe~~ 86 (101)
T 2csf_A 20 AAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSPENRTLWENLCTIRRFLNLPQHE 86 (101)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCHHHH
T ss_conf 9999999999998486599999999801711799998464799975402578999999998182989
No 79
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=92.34 E-value=0.18 Score=28.25 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=41.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9698888886898999999999--9999999998399499999986342999988755899944899999999
Q gi|254781147|r 1 MPRRKRDEPHLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 1 Mp~~~~~~p~~~~~~~~~~~~~--g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
|||+.+...+- ..++ +..+-..+--.+.|..++|+.+|||++++.++..+|...-...+..+.+
T Consensus 1 m~r~~r~~~tr-------~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~tiY~~F~~K~~L~~~~~~~~~~ 66 (215)
T 1ui5_A 1 MARQLRAEQTR-------ATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSR 66 (215)
T ss_dssp ----CCTTTHH-------HHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHH-------HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 98985199999-------9999999999998591518799999986878211876169999999999999999
No 80
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=92.20 E-value=0.44 Score=26.00 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9698888886898999999999999999999--8399499999986342999988755899944899999999
Q gi|254781147|r 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRK--EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 1 Mp~~~~~~p~~~~~~~~~~~~~g~~ir~~R~--~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
|+.++...|.-.........++-.-+.-+.+ -.+.|..++|+.+|||.+++..+..++...-...+..+.+
T Consensus 11 m~~~~~r~p~~~r~~~tr~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~tiY~yF~sK~~L~~~~~~~~~~ 83 (217)
T 3mvp_A 11 MAEKNIRKPKQERSIEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAYFASKEDILTALLKRYND 83 (217)
T ss_dssp ---CCSSCCSSCHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 6656788981212999999999999999987193427899999988909889999889999999999999999
No 81
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription/DNA complex; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=92.06 E-value=0.089 Score=30.08 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCH
Q ss_conf 399499999986342999988755899944899999999928999
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~ 77 (83)
.-.+|..+|+.+|++.|+||++.+|. +..+.++..+|+..+
T Consensus 23 a~~Gq~~vA~~~Gv~eStISRwK~~~----~~k~a~lLA~Le~~v 63 (83)
T 1zs4_A 23 AMLGTEKTAEAVGVDKSQISRWKRDW----IPKFSMLLAVLEWGV 63 (83)
T ss_dssp HHHCHHHHHHHHTSCHHHHHHHHHHT----HHHHHHHHHHHTTCC
T ss_pred HHHCCHHHHHHHCCCHHHHHHHCCCH----HHHHHHHHHHHCCCC
T ss_conf 98552999999699899987301347----999999999973799
No 82
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=91.85 E-value=0.69 Score=24.81 Aligned_cols=52 Identities=27% Similarity=0.217 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 9999999999999999839949999998634------29999887558999448999999
Q gi|254781147|r 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGF------AQSWISELETGKSTINIDNMIIL 69 (83)
Q Consensus 16 ~~~~~~~g~~ir~~R~~~gltq~ela~~~gi------s~~~is~iE~G~~~~~~~~l~~l 69 (83)
+.+-+.|+..++..|...|+||.+++..+|. ++++++..|+-.. +.....++
T Consensus 3 l~ele~f~~~fk~rRi~Lg~SQ~~V~~al~~~~~~~~sq~~i~~fe~~~l--s~kn~~kl 60 (151)
T 3d1n_I 3 MEEIREFAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDI--TPKSAQKL 60 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCS--CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHC--CHHHHHHH
T ss_conf 99999999999987777178786699998664676566021468999765--76259881
No 83
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=91.79 E-value=0.15 Score=28.67 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=23.1
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999839949999998634299998875
Q gi|254781147|r 29 IRKEAKLTQKEIRNRTGFAQSWISELE 55 (83)
Q Consensus 29 ~R~~~gltq~ela~~~gis~~~is~iE 55 (83)
.+...|.|..++|+..|||.++|++|-
T Consensus 18 ~~~~~g~s~~~vA~~~GIs~~tl~~W~ 44 (97)
T 2jn6_A 18 YENSDGASLQQIANDLGINRVTLKNWI 44 (97)
T ss_dssp HTTGGGSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHCCCCCCCCHHH
T ss_conf 998499859999999789957446899
No 84
>2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} SCOP: c.124.1.8
Probab=91.63 E-value=0.065 Score=30.89 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=30.5
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH-----HCCCCCCCH
Q ss_conf 99999983994999999863429999887-----558999448
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISEL-----ETGKSTINI 63 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~i-----E~G~~~~~~ 63 (83)
++.+-...|+||.++|+++|+|+++++++ |.|-..+++
T Consensus 26 l~~lyy~~~~~q~~IA~~lg~Sr~~V~r~l~~ar~~GiV~i~~ 68 (345)
T 2o0m_A 26 LRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQLNLIEPSK 68 (345)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 9999884897999999884997759999999999879779964
No 85
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=91.43 E-value=0.29 Score=27.09 Aligned_cols=54 Identities=2% Similarity=0.008 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999998--39949999998634299998875589994489999999992
Q gi|254781147|r 20 MIFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 20 ~~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
.++..-+.-+.+. .+.|..++|+.+|||++++..+...+..+-...+..+.+.+
T Consensus 21 ~Il~aA~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~yF~sKe~L~~~~~~~~~~~~ 76 (206)
T 3kz9_A 21 QLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQF 76 (206)
T ss_dssp HHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999729441779999998790998996980999999999999889999
No 86
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=91.35 E-value=0.32 Score=26.80 Aligned_cols=71 Identities=17% Similarity=0.080 Sum_probs=44.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 969888888689899999999999999999983---994999999863429999887558999448999999999
Q gi|254781147|r 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEA---KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 (83)
Q Consensus 1 Mp~~~~~~p~~~~~~~~~~~~~g~~ir~~R~~~---gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~a 72 (83)
||..+...............++ .--..+=.++ +.|..++|+.+|||.+++..+..++-..-...+..+...
T Consensus 2 m~~~~~~~~R~~~~~~tr~~Il-~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~sKe~L~~~~~~~~~~~ 75 (218)
T 3gzi_A 2 MAEAKSRVGRPSGDTQNRDKLI-LAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFGSKEKLFSTMIHETAMP 75 (218)
T ss_dssp -------CCCCCHHHHHHHHHH-HHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 8999999999999579999999-9999999974914164999999879197688874588999999999999999
No 87
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=90.71 E-value=0.48 Score=25.75 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 999999999999839949999998634299998875589994489
Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 (83)
Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~ 64 (83)
..|+..|+..+...+++|.+++..+|+|+++|+++.+.....+..
T Consensus 29 ~~~a~~Ik~~l~~~~i~q~~~~~~~~~Sqs~is~~l~~~~~~~~~ 73 (194)
T 1ic8_A 29 WRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQ 73 (194)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBCCCCHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999999999999828995335656677865402245689986655
No 88
>1t56_A EThr repressor; helix-turn-helix, TETR family, dimer, transcription; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: a.4.1.9 a.121.1.1 PDB: 3g1m_A* 1u9n_A* 1u9o_A*
Probab=90.66 E-value=0.24 Score=27.56 Aligned_cols=51 Identities=8% Similarity=0.090 Sum_probs=34.4
Q ss_pred HHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999999--98399499999986342999988755899944899999999
Q gi|254781147|r 21 IFVNNFRNIR--KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 21 ~~g~~ir~~R--~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
++..-+.-+. --.+.|..++|+.+|||.+++..+..++...=...+....+
T Consensus 29 Il~aA~~l~~~~G~~~~ti~~IA~~agvs~~tlY~yF~sK~~L~~~~~~~~~~ 81 (216)
T 1t56_A 29 ILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVN 81 (216)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999997092407899999883999999957639878999999999999
No 89
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription/DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=89.87 E-value=0.38 Score=26.37 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHCCCC-----CCCHHHHHHHHHHHCCCH
Q ss_conf 999999999999839949999998-6342999988755899-----944899999999928999
Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNR-TGFAQSWISELETGKS-----TINIDNMIILAHTLDTPL 77 (83)
Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~-~gis~~~is~iE~G~~-----~~~~~~l~~la~al~i~~ 77 (83)
..++.+|+...+..+++|..+|+. +|.|++++|.+-+.-. ...-..+.++..-+..+.
T Consensus 7 ~~ia~~Ik~~L~~~~I~Q~~fa~~vlg~SQ~tLS~lL~~pkpw~~l~~~re~~~Rm~~w~~~~~ 70 (164)
T 2d5v_A 7 KEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPE 70 (164)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTSCCHHHHHHHHHSCCCGGGCSTTHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCC
T ss_conf 9999999999988799789999998457888999987189985763737699999998851560
No 90
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=89.70 E-value=0.27 Score=27.22 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=27.6
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999983994999999863429999887558
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G 57 (83)
|-.+|--.++|++|+|+..|+|++.|+++++.
T Consensus 195 Ii~~ry~~~~tl~eIA~~lgiS~~rVrqi~~~ 226 (239)
T 1rp3_A 195 VIQLIFYEELPAKEVAKILETSVSRVSQLKAK 226 (239)
T ss_dssp HHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999269999999999989599999999999
No 91
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=89.67 E-value=0.52 Score=25.56 Aligned_cols=47 Identities=9% Similarity=0.128 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 99999999999998399499999986342999988755899944899
Q gi|254781147|r 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 (83)
Q Consensus 19 ~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~ 65 (83)
...+...+........+|.++||+.+|+|.++++++.+.....|...
T Consensus 78 ~~~v~~~~~~~~~~~~~sl~~la~~~g~S~~~l~R~Fk~~~G~tp~~ 124 (133)
T 1u8b_A 78 LDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKATTGMTPKA 124 (133)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 89999999997047999999994261989999999999998929999
No 92
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=89.55 E-value=0.26 Score=27.37 Aligned_cols=66 Identities=18% Similarity=0.166 Sum_probs=41.0
Q ss_pred CCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 9698888886898999999-999999999999839949999998634299998875589994489999999
Q gi|254781147|r 1 MPRRKRDEPHLSDAILRER-MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 (83)
Q Consensus 1 Mp~~~~~~p~~~~~~~~~~-~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la 70 (83)
||++++... + ..+++ ..-+..+-.-+--.+.|..++|+.+||+++++..+..++...=...+..+.
T Consensus 4 M~r~~~~~~---~-~tr~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~tlY~~F~sK~~Ll~~~~~~~~ 70 (156)
T 3ljl_A 4 MPKRSKEDT---E-ITIQKIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGISHHFPKKTDFTAALDGRIF 70 (156)
T ss_dssp ----CCSHH---H-HHHHHHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHHTTHHH
T ss_pred CCCCCCCCH---H-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999985279---9-999999999999998719030779999998698886998987799999999999999
No 93
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=89.49 E-value=0.47 Score=25.82 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=41.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9698888886898999999999999999999839949999998634299998875589994489999999992
Q gi|254781147|r 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 1 Mp~~~~~~p~~~~~~~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
|||.+... -+.++ .-+..+-.-+--.++|..++|+.+|||.+++.++..+|...-...+....+.+
T Consensus 2 M~R~~~~t---re~Il----~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~ 67 (195)
T 3frq_A 2 MPRPKLKS---DDEVL----EAATVVLKRCGPIEFTLSGVAKEVGLSRAALIQRFTNRDTLLVRMMERGVEQV 67 (195)
T ss_dssp ----CCCC---HHHHH----HHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCC---HHHHH----HHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 79897360---99999----99999999759130779999998789822178739599999999999999999
No 94
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=89.33 E-value=0.4 Score=26.22 Aligned_cols=66 Identities=21% Similarity=0.314 Sum_probs=41.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 988888868989999999999999999998--3994999999863429999887558999448999999
Q gi|254781147|r 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 (83)
Q Consensus 3 ~~~~~~p~~~~~~~~~~~~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~l 69 (83)
++++..|...++..+++ ++-.-+..+.+. .+.|..++|+.+|||.+++.++...+...-...+..+
T Consensus 5 ~r~rgRp~~~~~~~R~~-Il~aA~~l~~~~G~~~~si~~IA~~agvs~~tlY~~F~sK~~L~~a~~~~~ 72 (208)
T 3cwr_A 5 QRNRGRPAVPDAVVRES-IVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYRFASGRADLIGLLVESW 72 (208)
T ss_dssp ------CCCCHHHHHHH-HHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHH-HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999982999999-999999999986915077999999948996640358999999999999999
No 95
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=88.91 E-value=0.53 Score=25.47 Aligned_cols=33 Identities=9% Similarity=0.264 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999983994999999863429999887
Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-..-++.+|....+|..|+|+.+|+|+++++++
T Consensus 41 ~~~il~~i~~~g~iSR~ela~~tgLS~~Tvs~i 73 (429)
T 1z05_A 41 AGRVYKLIDQKGPISRIDLSKESELAPASITKI 73 (429)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999999849918999998879599999999
No 96
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=88.81 E-value=0.25 Score=27.46 Aligned_cols=32 Identities=9% Similarity=0.053 Sum_probs=26.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999839949999998634299998875589
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~ 58 (83)
++.++ ..|.|..++|+..|||+++|.++-...
T Consensus 14 a~~l~-~~G~s~~~iA~~~gVsr~TlYrylp~~ 45 (52)
T 1jko_C 14 ISRLL-EKGHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHH-HTTCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHH-HCCCCHHHHHHHHCCCHHHHHHHCCCH
T ss_conf 99999-978989999999797999999985130
No 97
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=88.57 E-value=0.011 Score=35.60 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=23.9
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 83994999999863429999887558
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G 57 (83)
++|+||+|.|+.+|.|++.||-||+.
T Consensus 3 ~kG~tQ~eIA~~LgTSraNVs~IEk~ 28 (122)
T 1nr3_A 3 ERGWSQKKIARELKTTRQNVSAIERK 28 (122)
T ss_dssp CCSCSSCSTHHHHHHCCSSSCCHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 25787999999977758899999999
No 98
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=88.44 E-value=0.51 Score=25.62 Aligned_cols=52 Identities=6% Similarity=0.089 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999999998--399499999986342999988755899944899999999
Q gi|254781147|r 20 MIFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 20 ~~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
.++-.-+..+.+. .+.|..++|+.+|+|++++..+..++...=...+..+..
T Consensus 34 ~Il~AA~~l~~~~G~~~~si~~IA~~agvs~~tiY~~F~sK~~L~~~~~~~~~~ 87 (222)
T 3bru_A 34 SLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALIEAYDT 87 (222)
T ss_dssp HHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999999998590407799999986899026988569899999999999999
No 99
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: a.35.1.6
Probab=88.22 E-value=0.98 Score=23.89 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=40.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHH-H-HHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999998399499999986-3-42999988755899944899999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRT-G-FAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~-g-is~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
+-.|..+|+-.-||..|-|.-+ + ++..+..++|+|...++.+.+.++..
T Consensus 5 ~~ELqalR~if~m~v~EaA~~I~~~~~s~tWQ~WE~G~~~IP~~Vi~~~~~ 55 (120)
T 1s4k_A 5 ALELQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIPISPEIIARLKE 55 (120)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTSSSCCHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 899999999999539999999965776899999975897899999999999
No 100
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=87.72 E-value=0.19 Score=28.09 Aligned_cols=68 Identities=10% Similarity=0.019 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 9698888886898999999999--99999999983994999999863429999887558999448999999999
Q gi|254781147|r 1 MPRRKRDEPHLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 (83)
Q Consensus 1 Mp~~~~~~p~~~~~~~~~~~~~--g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~a 72 (83)
||..++...+. +. +++ ++ +..+-.-.--.+.|..++|+.+|+|.+++..+..++...-...+......
T Consensus 1 ~~~~~~~~~~g-~~--R~~-Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tiY~~F~sK~~L~~~~~~~~~~~ 70 (199)
T 3on2_A 1 MPVAEQPYHHG-SL--RRV-LLARAESTLEKDGVDGLSLRQLAREAGVSHAAPSKHFRDRQALLDALAESGFLR 70 (199)
T ss_dssp ---CCCTTCCC-CH--HHH-HHHHHHHHHHHHCGGGCCHHHHHHHTC-----CCCSSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCH-HH--HHH-HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 97999999863-79--999-999999999975916165999999979098678676698678999999999999
No 101
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=87.15 E-value=1.6 Score=22.61 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 9999999999999983994999999863------4299998875589994489999999
Q gi|254781147|r 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTG------FAQSWISELETGKSTINIDNMIILA 70 (83)
Q Consensus 18 ~~~~~g~~ir~~R~~~gltq~ela~~~g------is~~~is~iE~G~~~~~~~~l~~la 70 (83)
+-+.|+..++..|...|+||.+++..+| .|++++++.|.-. ++.....++-
T Consensus 14 ele~Fa~~~r~rri~lg~tq~~vg~al~~~~g~~~Sqtti~r~e~~~--ls~kn~~kl~ 70 (164)
T 2xsd_C 14 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ--LSFKNMCKLK 70 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTC--SBHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHCC--CCHHHHHHCC
T ss_conf 99999999999998717873335777542257777876565043258--9988886452
No 102
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228}
Probab=86.76 E-value=0.86 Score=24.26 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 86898999999999999-9999998399499999986342999988755
Q gi|254781147|r 9 PHLSDAILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 9 p~~~~~~~~~~~~~g~~-ir~~R~~~gltq~ela~~~gis~~~is~iE~ 56 (83)
+.+++.. + .++.. +.....-..+|..++|+.+|+|.++|.|+=+
T Consensus 13 ~~ls~se---~-~Ia~yil~~~~~i~~~si~elA~~~~VS~aTi~Rf~k 57 (107)
T 3iwf_A 13 PYFTKNE---K-KIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSK 57 (107)
T ss_dssp GGSCHHH---H-HHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHCCHHH---H-HHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 6639999---9-9999999599999776599999897989989999999
No 103
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=86.72 E-value=1.1 Score=23.70 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999998399--49999998634299998
Q gi|254781147|r 17 RERMIFVNNFRNIRKEAKL--TQKEIRNRTGFAQSWIS 52 (83)
Q Consensus 17 ~~~~~~g~~ir~~R~~~gl--tq~ela~~~gis~~~is 52 (83)
+++ .+-..|+.++++.|+ |++|+|+.+|++.++..
T Consensus 6 kq~-~il~~I~~~~~~~G~~PS~reIa~~~Giss~s~v 42 (196)
T 3k2z_A 6 RQR-KVLLFIEEFIEKNGYPPSVREIARRFRITPRGAL 42 (196)
T ss_dssp HHH-HHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHH
T ss_pred HHH-HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHH
T ss_conf 999-9999999999984989669999998299964578
No 104
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=86.72 E-value=0.95 Score=23.98 Aligned_cols=47 Identities=9% Similarity=0.097 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCC------------CCCCCHHHHH-----HHHHHHCCCHHHH
Q ss_conf 994999999863429999887558------------9994489999-----9999928999996
Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISELETG------------KSTINIDNMI-----ILAHTLDTPLWKL 80 (83)
Q Consensus 34 gltq~ela~~~gis~~~is~iE~G------------~~~~~~~~l~-----~la~al~i~~~~l 80 (83)
.+|..|+|+.+|+|.++|.-||.- .+.-+...+. ..++.+|+|+.+.
T Consensus 2 ~ytI~e~A~~~gvs~~tlR~Ye~~GLl~p~~r~~~gyR~Y~~~~v~~l~~I~~lr~~G~sl~ei 65 (109)
T 1r8d_A 2 KYQVKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEI 65 (109)
T ss_dssp CBCHHHHHHHHSCCHHHHHHHHHTTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CEEHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 5109999999896999999999858948773189998306699999999999999969999999
No 105
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=86.49 E-value=0.68 Score=24.86 Aligned_cols=28 Identities=7% Similarity=0.095 Sum_probs=23.9
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999839949999998634299998875
Q gi|254781147|r 27 RNIRKEAKLTQKEIRNRTGFAQSWISELE 55 (83)
Q Consensus 27 r~~R~~~gltq~ela~~~gis~~~is~iE 55 (83)
..++ ..|+|+.++|+.+|+|.++|++|-
T Consensus 16 ~~l~-~~G~s~~~IAk~lg~s~stV~r~l 43 (141)
T 1u78_A 16 DVMK-LLNVSLHEMSRKISRSRHCIRVYL 43 (141)
T ss_dssp HHHH-HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHH-HCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999-979999999999895789999999
No 106
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=86.41 E-value=0.44 Score=25.98 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999983994999999863429999887
Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-+.-++.+|+...+|..|+|+.+|+|+++++++
T Consensus 18 ~~~Il~~i~~~g~iSR~ela~~~gls~~Tvs~i 50 (406)
T 1z6r_A 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKI 50 (406)
T ss_dssp HHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999999859918999998879599999999
No 107
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H
Probab=86.33 E-value=0.59 Score=25.23 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=26.1
Q ss_pred HHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999----83994999999863429999887558
Q gi|254781147|r 26 FRNIRK----EAKLTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 26 ir~~R~----~~gltq~ela~~~gis~~~is~iE~G 57 (83)
|-.+|- ...+|+.|+|+.+|||+..+++||+.
T Consensus 18 Ii~~ryGl~~~~~~tl~eIa~~lgiS~erVrqi~~~ 53 (73)
T 1ku3_A 18 VLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp HHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999981899999878999999989699999999999
No 108
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=86.26 E-value=1.8 Score=22.33 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHCCCC
Q ss_conf 999999999999999839949999998634------2999988755899
Q gi|254781147|r 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGF------AQSWISELETGKS 59 (83)
Q Consensus 17 ~~~~~~g~~ir~~R~~~gltq~ela~~~gi------s~~~is~iE~G~~ 59 (83)
.+-+.|+..++..|...|+||.+++..++. |+++++..|....
T Consensus 7 ~ele~f~~~fk~rRi~l~~tQ~~v~~al~~~~~~~~sq~~~~~~e~~~l 55 (160)
T 1e3o_C 7 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNL 55 (160)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
T ss_conf 9999999999998850376586999999830378777577727875334
No 109
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor A3}
Probab=86.14 E-value=1.1 Score=23.67 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=30.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999998399499999986342999988755899944
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~ 62 (83)
+..+-..+--.+.|..++|+.+|||++++..+..++...-
T Consensus 16 A~~l~~~~G~~~~tl~~IA~~agvs~~t~Y~~F~sKe~L~ 55 (195)
T 2dg7_A 16 ALELYSEHGYDNVTVTDIAERAGLTRRSYFRYFPDKREVL 55 (195)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHCSSTTGGG
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHH
T ss_conf 9999998590406699999997909889977779999999
No 110
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, structural genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=86.13 E-value=1 Score=23.85 Aligned_cols=49 Identities=10% Similarity=-0.031 Sum_probs=34.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999998399499999986342999988755899944899999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
+..+-.-+--.+.|..++|+.+|+|.+++..+..++...-...+....+
T Consensus 21 A~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~ 69 (198)
T 3cjd_A 21 AEAQIEAEGLASLRARELARQADCAVGAIYTHFQDLNALTLEVNGRTFA 69 (198)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999997093405799999982889321023079778899999999999
No 111
>2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=86.07 E-value=0.88 Score=24.19 Aligned_cols=50 Identities=6% Similarity=0.113 Sum_probs=35.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99999999983994999999863429999887558999448999999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~a 72 (83)
+..+-.-+--.+.|..++|+.+|+|++++..+..++...-...+......
T Consensus 18 a~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~v~~~~~~~ 67 (209)
T 2gfn_A 18 VLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDI 67 (209)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999972913076999999979099999743489999999999999999
No 112
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=85.97 E-value=0.5 Score=25.66 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=23.3
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 83994999999863429999887558
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G 57 (83)
...+|++|+|+.+|||+..+++||+-
T Consensus 23 ~~~~tl~eia~~lgvS~erVrqie~~ 48 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAK 48 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99778999999989699999999999
No 113
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=85.96 E-value=1.4 Score=22.91 Aligned_cols=36 Identities=6% Similarity=0.119 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999839949999998634299998875589
Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 (83)
Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~ 58 (83)
+-..|..++ ..|+|..++|+.+|||++++.+|-+-.
T Consensus 164 ~v~~I~~l~-~~G~s~~~IA~~l~is~~Tv~R~l~~~ 199 (209)
T 2r0q_C 164 IYHRVVEML-EEGQAISKIAKEVNITRQTVYRIKHDN 199 (209)
T ss_dssp HHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 999999999-875999999999896999999999977
No 114
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=85.91 E-value=0.17 Score=28.42 Aligned_cols=66 Identities=11% Similarity=0.101 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 96988888868989999999999999999998--399499999986342999988755899944899999999
Q gi|254781147|r 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 1 Mp~~~~~~p~~~~~~~~~~~~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
|+|+.+... +. ....++..-++.+.+. .+.|..++|+.+|||++++..+..++...=...+....+
T Consensus 1 MaR~~~~~~---~~--tr~~Il~aA~~l~~~~G~~~~si~~Ia~~agvs~~tiY~~F~sK~~L~~~v~~~~~~ 68 (210)
T 2wui_A 1 MARKTKEES---QK--TRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYGHYKNKIEVCLAMCDRAFG 68 (210)
T ss_dssp --------C---TH--HHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHT
T ss_pred CCCCCCCCH---HH--HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 959971059---99--999999999999997591617599999987879774444789999999999999999
No 115
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=85.76 E-value=0.61 Score=25.11 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=25.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999998399499999986342999988755
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~ 56 (83)
..++. ..+.|+|++++|+++|+|.++|+++-.
T Consensus 125 ~~~~~-l~~~g~t~~~iA~~lg~s~~~V~~~l~ 156 (230)
T 1vz0_A 125 RGYQA-LLEMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp HHHHH-HHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHH-HHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999-988418999999880999999999998
No 116
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. RHA1, structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=85.68 E-value=0.75 Score=24.59 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999998--39949999998634299998875589994489999999992
Q gi|254781147|r 20 MIFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 20 ~~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
.++-.-+.-+... .+.|..++|+.+|||++++..+...+...-...+..+.+.+
T Consensus 18 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~ 73 (204)
T 2ibd_A 18 ELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFLDDL 73 (204)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999749240779999998688926599982999999999999999999
No 117
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=85.44 E-value=1.2 Score=23.31 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=38.1
Q ss_pred HHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 999999999--998399499999986342999988755899944899999999928
Q gi|254781147|r 21 IFVNNFRNI--RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 (83)
Q Consensus 21 ~~g~~ir~~--R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~ 74 (83)
++..-++-+ .--.+.|..++|+.+|||.+++.++..++...-...+..+.+.+.
T Consensus 14 Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 69 (203)
T 2np5_A 14 LAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFSTKDEMFAFALRTLVDKLL 69 (203)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999997290307799999997909887701069999999999999888899
No 118
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=85.21 E-value=0.55 Score=25.40 Aligned_cols=65 Identities=11% Similarity=0.014 Sum_probs=38.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 96988888868989999999999999999998--399499999986342999988755899944899999999
Q gi|254781147|r 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 1 Mp~~~~~~p~~~~~~~~~~~~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
|||..++.. . +...++-.-+.-+.+. .+.|..++|+.+|||++++.++...+...-...+..+.+
T Consensus 2 M~r~~~~~~----~--~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~yF~sK~~Ll~~~~~~~~~ 68 (203)
T 3b81_A 2 MSRTNINFN----N--KRTELANKIWDIFIANGYENTTLAFIINKLGISKGALYHYFSSKEECADAAIENRVA 68 (203)
T ss_dssp -----CCHH----H--HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHH----H--HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 899999889----9--999999999999997292417799999997909999976469999999999999999
No 119
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=85.17 E-value=0.23 Score=27.61 Aligned_cols=50 Identities=6% Similarity=0.003 Sum_probs=35.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99999999983994999999863429999887558999448999999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~a 72 (83)
+..+-.-+--.+.|..++|+.+|||++++..+...+...=...+..+...
T Consensus 21 a~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~yF~sKe~L~~a~~~~~~~~ 70 (197)
T 2hyt_A 21 ARKVFSERGYADTSMDDLTAQASLTRGALYHHFGDKKGLLAAVVEQIDAE 70 (197)
T ss_dssp HHHHHHHHCTTTCCHHHHHHHHTCCTTHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999986915187999999838592406550899999999999999999
No 120
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=85.02 E-value=0.94 Score=24.03 Aligned_cols=50 Identities=22% Similarity=0.117 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 999999999998--39949999998634299998875589994489999999
Q gi|254781147|r 21 IFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 (83)
Q Consensus 21 ~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la 70 (83)
++-.-++-+.+. .+.|..++|+.+|||.+++..+..++...-...+..+.
T Consensus 16 Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~tiY~~F~~K~~L~~a~~~~~~ 67 (210)
T 2xdn_A 16 IIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQALLDSLA 67 (210)
T ss_dssp HHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999759140779999999792988998886999999998899999
No 121
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.40A {Rhodococcus SP}
Probab=84.76 E-value=1.7 Score=22.49 Aligned_cols=55 Identities=4% Similarity=0.005 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999998--39949999998634299998875589994489999999992
Q gi|254781147|r 19 RMIFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 19 ~~~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
..++..-++-+.++ .+.|..++|+.+|||++++.++..++...-...+..+.+.+
T Consensus 17 ~~Il~aa~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~~F~~K~~Ll~~~~~~~~~~~ 73 (203)
T 3f1b_A 17 QQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQREGLRF 73 (203)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999999739352879999999890988887881998999999999999999
No 122
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, protein structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=84.71 E-value=0.95 Score=23.99 Aligned_cols=68 Identities=7% Similarity=0.036 Sum_probs=42.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9698888886898999999999--9999999998399499999986342999988755899944899999999
Q gi|254781147|r 1 MPRRKRDEPHLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 1 Mp~~~~~~p~~~~~~~~~~~~~--g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
|+..+...+..++. ...++ +..+-.-+--.+.|..++|+.+|||.+++.++..+|...-...+....+
T Consensus 3 ~~~~~~~~~~~~~r---r~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~Ke~L~~a~~~~~~~ 72 (221)
T 3c2b_A 3 MASDPITTQEFSPR---QNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKWFGDRDGLLAAMITFQQS 72 (221)
T ss_dssp -----------CHH---HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHH---HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999987665199---99999999999997591307799999997949889998879999999999999999
No 123
>2dg8_A Putative TETR-family transcriptional regulatory protein; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor A3}
Probab=84.52 E-value=1 Score=23.76 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=41.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH--HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 9698888886898999999999999--99999983994999999863429999887558999448999999999
Q gi|254781147|r 1 MPRRKRDEPHLSDAILRERMIFVNN--FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 (83)
Q Consensus 1 Mp~~~~~~p~~~~~~~~~~~~~g~~--ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~a 72 (83)
|++.+.++.. ...++..- +-.-.--.+.|..++|+.+|||++++.++..++...-...+....+.
T Consensus 1 M~t~~~~~~~-------R~~Il~aA~~l~~e~G~~~~si~~Ia~~agvs~~t~Y~~F~sKe~Ll~~v~~~~~~~ 67 (193)
T 2dg8_A 1 MATGHTDPQR-------RERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTYHFTGIEQLLREAFGRFTDH 67 (193)
T ss_dssp ------CTTH-------HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHH-------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9789998799-------999999999999975904076999999989099999878089999999999999999
No 124
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=84.23 E-value=1.3 Score=23.15 Aligned_cols=58 Identities=12% Similarity=0.136 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCCC---C---HHHHHHHHHHHCCC
Q ss_conf 99999999999998399499999986-34299998875589994---4---89999999992899
Q gi|254781147|r 19 RMIFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKSTI---N---IDNMIILAHTLDTP 76 (83)
Q Consensus 19 ~~~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~~~~---~---~~~l~~la~al~i~ 76 (83)
-..++.+|+...+..+++|+-+|+.+ |.|+.++|.+-+.-... + -++..++-.-|+-|
T Consensus 19 T~~I~~~v~~eL~~~~I~Q~~Fa~~VL~rsQGtlSdLL~~PKPW~kl~~~gR~~y~RM~~wL~~p 83 (101)
T 1x2l_A 19 TAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQFLSDE 83 (101)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHHCCCCGGGCCHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 99999999999999498599999999810858899998389992776688889999999985476
No 125
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, PSI; 1.90A {Porphyromonas gingivalis W83} SCOP: a.4.5.4 b.82.3.2
Probab=83.94 E-value=0.66 Score=24.94 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH-----HCC-------C-CCCCHHHHHHHHHH
Q ss_conf 3994999999863429999887-----558-------9-99448999999999
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL-----ETG-------K-STINIDNMIILAHT 72 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~i-----E~G-------~-~~~~~~~l~~la~a 72 (83)
..+||+++|..+|+|+.+++++ +.| + ...+.+.|.++|++
T Consensus 179 ~~~t~~~lA~~~G~sr~tvsr~l~~l~~~g~I~~~~~~i~I~d~~~L~~~a~~ 231 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKIIDCDRLQKTARS 231 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCEEEECCHHHHHHHHHC
T ss_conf 45059999988798999999999999988979970999998689999999856
No 126
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=83.45 E-value=1.2 Score=23.39 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999999998--399499999986342999988755899944899999999
Q gi|254781147|r 20 MIFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 20 ~~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
.++..-+.-+.+. .+.|.+++|+.+|||++++..+...+...=...+..+.+
T Consensus 12 ~Il~aa~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sKe~L~~~~~~~~~~ 65 (206)
T 1vi0_A 12 QIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMG 65 (206)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 999999999987390306799999997949999999918728999999998877
No 127
>3knw_A Putative transcriptional regulator (TETR/ACRR family); TETR-like protein, MCSG, PSI, structural genomics, protein structure initiative; 2.45A {Acinetobacter SP}
Probab=83.33 E-value=1.1 Score=23.61 Aligned_cols=54 Identities=9% Similarity=0.025 Sum_probs=37.5
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 999999839949999998634299998875589994489999999992899999
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~ 79 (83)
+-...--.+.|..++|+.+|||.+++..+..++...=...+..+...+.-.+.+
T Consensus 26 l~~~~G~~~~s~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~ 79 (212)
T 3knw_A 26 LVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQ 79 (212)
T ss_dssp HHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999719463879999999790999998883789999999999999999999999
No 128
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=83.24 E-value=1.6 Score=22.64 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCC------------CCCCCHHH-----HHHHHHHHCCCHHHH
Q ss_conf 94999999863429999887558------------99944899-----999999928999996
Q gi|254781147|r 35 LTQKEIRNRTGFAQSWISELETG------------KSTINIDN-----MIILAHTLDTPLWKL 80 (83)
Q Consensus 35 ltq~ela~~~gis~~~is~iE~G------------~~~~~~~~-----l~~la~al~i~~~~l 80 (83)
+|..|+|+.+|+|.++|.-||.- .+.-+... ..+.++.+|+++.+.
T Consensus 2 ytI~e~a~~~gvs~~tLR~Ye~~GLl~p~~r~~~gyR~Y~~~~~~~l~~I~~lr~~G~sl~eI 64 (108)
T 2vz4_A 2 YSVGQVAGFAGVTVRTLHHYDDIGLLVPSERSHAGHRRYSDADLDRLQQILFYRELGFPLDEV 64 (108)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHTSSCCSEECSSCCEEBCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 508999999895999999983258999872089984247879899999999999969999999
No 129
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=83.06 E-value=1.1 Score=23.58 Aligned_cols=33 Identities=9% Similarity=0.104 Sum_probs=28.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999839949999998634299998875
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE 55 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE 55 (83)
-..|...-.+.++.+.+.|+.+|||++++.+.-
T Consensus 43 r~~I~~aL~~~~GN~s~AAr~LGIsR~TLyrkl 75 (81)
T 1umq_A 43 WEHIQRIYEMCDRNVSETARRLNMHRRTLQRIL 75 (81)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999972779999999798999999999
No 130
>3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP}
Probab=83.01 E-value=1.4 Score=22.94 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 989999999999999999998--399499999986342999988755899944899999999928
Q gi|254781147|r 12 SDAILRERMIFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 (83)
Q Consensus 12 ~~~~~~~~~~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~ 74 (83)
.+...+...++..-+.-+... .+.|..++|+.+|||++++..+..++...-...+....+.+.
T Consensus 18 ~~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~ 82 (207)
T 3bjb_A 18 EEQRARHVRMLEAAIELATEKELARVQMHEVAKRAGVAIGTLYRYFPSKTHLFVAVMVDQIDRMG 82 (207)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 43899999999999999997493527799999998909988613189999999999999999888
No 131
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 1.70A {Rhodococcus SP}
Probab=82.84 E-value=1.2 Score=23.35 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=34.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999839949999998634299998875589994489999999992
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
.+-...--.+.|..++|+.+|+|++++..+..++...-...+..+...+
T Consensus 21 ~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~ 69 (194)
T 2nx4_A 21 RLIAARGIEAANMRDIATEAGYTNGALSHYFAGKDEILRTSYEHISEAT 69 (194)
T ss_dssp HHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999759141659999998790999994306999999999999876679
No 132
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=82.81 E-value=1.3 Score=23.21 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 499999986342999988755899944899999999928
Q gi|254781147|r 36 TQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 (83)
Q Consensus 36 tq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~ 74 (83)
++..||+.+|||++.||+| |. .+......+|-++-+
T Consensus 12 ~~~~lA~~lgIs~~aVsqW--g~-~VP~~ra~~iE~~T~ 47 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQW--KE-VIPEKDAYRLEIVTA 47 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHC--CS-BCCHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCHHHHHHC--CC-CCCHHHHHHHHHHHC
T ss_conf 9999999969999999874--77-798999999999959
No 133
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=82.74 E-value=0.2 Score=27.99 Aligned_cols=32 Identities=31% Similarity=0.355 Sum_probs=23.6
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999983994999999863429999887558
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G 57 (83)
|-.+|.-.++|++|+|+.+|||++.|+++++-
T Consensus 206 Vi~l~y~~~~t~~EIA~~lgiS~~rV~qi~~~ 237 (243)
T 1l0o_C 206 IVYLRYYKDQTQSEVASRLGISQVQMSRLEKK 237 (243)
T ss_dssp --------------------------------
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99998069998999999989499999999999
No 134
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=82.48 E-value=1.8 Score=22.35 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCC------CCHHHHHHHHHHHCCCHHH
Q ss_conf 999999999998399499999986-3429999887558999------4489999999992899999
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKST------INIDNMIILAHTLDTPLWK 79 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~~~------~~~~~l~~la~al~i~~~~ 79 (83)
.++.+|+...+..+++|+-+|+.+ |.|+.++|.+-+.-.. ..-++..++-.-|+.|-.+
T Consensus 21 eI~~~v~~eL~~~~IsQ~~Fa~~vL~rSQGtlSdLL~~PK~pw~~~~~gre~y~RM~~wL~~pe~~ 86 (101)
T 1wiz_A 21 DIYQQVRDELKRASVSQAVFARVAFNRTQGLLSEILRKEEDPRTASQSLLVNLRAMQNFLNLPEVE 86 (101)
T ss_dssp THHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHTCCCTTTCCHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 999999999999598799999999753828899999579982555135679999999998383888
No 135
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=82.38 E-value=2.4 Score=21.61 Aligned_cols=31 Identities=6% Similarity=0.175 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999983994999999863429999887
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-.+|..+ ...|++..++|++.|||.+++++|
T Consensus 38 R~rIV~~-~~~G~s~r~IArrf~VS~stV~ki 68 (149)
T 1k78_A 38 RQRIVEL-AHQGVRPCDISRQLRVSHGCVSKI 68 (149)
T ss_dssp HHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999999-996999999999889499999999
No 136
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=82.14 E-value=1.8 Score=22.39 Aligned_cols=57 Identities=14% Similarity=0.284 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCC---CC---HHHHHHHHHHHCCC
Q ss_conf 9999999999998399499999986-3429999887558999---44---89999999992899
Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKST---IN---IDNMIILAHTLDTP 76 (83)
Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~~~---~~---~~~l~~la~al~i~ 76 (83)
..++.+|+...+..+++|+-+|+.+ |.|+.++|.+-+.-.. .+ -++..++-.-|+-|
T Consensus 30 ~~Ia~~v~~~L~~~~IsQ~~Fak~VL~rSQGtlSdLL~~PKPW~kl~~~gR~~y~RM~~WL~~p 93 (111)
T 1wh8_A 30 YSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQLWLNDP 93 (111)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHHSCCCTTTSCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 9999999999998585299999999800847899998389990676688889999999981687
No 137
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=82.11 E-value=1.1 Score=23.52 Aligned_cols=32 Identities=3% Similarity=-0.044 Sum_probs=27.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999983994999999863429999887
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-.-|..+....++|+.|+|+.+|+++++++++
T Consensus 155 ~~iL~~L~~~~~~s~~ela~~l~~s~~tv~r~ 186 (244)
T 2wte_A 155 MKLLNVLYETKGTGITELAKMLDKSEKTLINK 186 (244)
T ss_dssp HHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999999779989999999979798899999
No 138
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia}
Probab=82.05 E-value=1.3 Score=23.11 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=41.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 969888888689899999999999999999--98399499999986342999988755899944899999999
Q gi|254781147|r 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIR--KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 1 Mp~~~~~~p~~~~~~~~~~~~~g~~ir~~R--~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
|.|+.+....-.- ..++..-++-+. --.+.|..++|+.+|||++++.++...+-..-...+..+..
T Consensus 1 M~r~~~~~~~~tr-----~~Il~aA~~l~~~~G~~~~t~~~Ia~~Agvs~g~lY~~F~sK~~L~~~~~~~~~~ 68 (219)
T 2w53_A 1 MARKTKEDTQATR-----EGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIVERVHL 68 (219)
T ss_dssp ------CGGGCCH-----HHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHH-----HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9699512499999-----9999999999998592408899999984889554204789999999999999999
No 139
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=81.96 E-value=2.4 Score=21.63 Aligned_cols=53 Identities=8% Similarity=0.049 Sum_probs=36.9
Q ss_pred HHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999--839949999998634299998875589994489999999992
Q gi|254781147|r 21 IFVNNFRNIRK--EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 21 ~~g~~ir~~R~--~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
++-.-++-+.+ -.+.|..++|+.+|||++++..+...|...-...+..+.+.+
T Consensus 33 Il~aa~~l~~~~G~~~~t~~~IA~~aGvs~~tlY~~F~sKe~L~~a~~~~~~~~~ 87 (217)
T 3hta_A 33 IIDAAIRVVGQKGIAGLSHRTVAAEADVPLGSTTYHFATLDDLMVAALRQANEGF 87 (217)
T ss_dssp HHHHHHHHHHHHTGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999859040779999999488831487616999999999999999999
No 140
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=81.50 E-value=0.95 Score=23.98 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=27.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999983994999999863429999887558
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G 57 (83)
.-|..+....++|+.++|+.-||++++|++|-++
T Consensus 15 ~vi~~~~~~~~~~~~~iAk~fgv~~sTi~~~~k~ 48 (131)
T 1hlv_A 15 RIIQEVEENPDLRKGEIARRFNIPPSTLSTILKN 48 (131)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999778888999999989199999999924
No 141
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=81.49 E-value=1.8 Score=22.32 Aligned_cols=51 Identities=6% Similarity=0.014 Sum_probs=35.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999839949999998634299998875589994489999999992
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
+..+-...--.+.|..++|+.+|+|++++..+..++-..=...+..+.+.+
T Consensus 44 A~~l~~~~G~~~~T~~~IA~~aGvs~~tiY~yF~sKe~Ll~~v~~~~~~~~ 94 (221)
T 3g7r_A 44 ATRIFYAEGIHSVGIDRITAEAQVTRATLYRHFSGKDDLILAYLDQADRGI 94 (221)
T ss_dssp HHHHHHHHCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999829140879999999891998999883769999999999999999
No 142
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=81.47 E-value=1.7 Score=22.56 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 868989999999999999-999998399499999986342999988755899944899
Q gi|254781147|r 9 PHLSDAILRERMIFVNNF-RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 (83)
Q Consensus 9 p~~~~~~~~~~~~~g~~i-r~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~ 65 (83)
+.+++. ++ .++..| .....-..+|..++|+.+|+|.++|.|+=+.-.--+...
T Consensus 17 ~~Lt~~---E~-~Ia~yil~n~~~v~~~si~elA~~~~vS~aTI~Rf~kklGf~gf~e 70 (111)
T 2o3f_A 17 HXLPPS---ER-KLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLGLKGFQD 70 (111)
T ss_dssp GGSCHH---HH-HHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHH
T ss_pred CCCCHH---HH-HHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHH
T ss_conf 417999---99-9999999592476437899999897989879999999927798999
No 143
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=81.43 E-value=2 Score=22.11 Aligned_cols=60 Identities=10% Similarity=0.017 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 999999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
-+..+-..+--.+.|..++|+.+|||.++|..+..+|...-...+......+.-.+...+
T Consensus 26 aA~~lf~~~G~~~~s~~~IA~~aGvs~~sly~~F~sK~~L~~av~~~~~~~~~~~~~~~~ 85 (251)
T 3npi_A 26 IALSLFSELGFSDAKLEAIAKKSGMSKRMIHYHFGDKRGLYICCLEEAVRRLRPTAEEMY 85 (251)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCSHHHHHHHHHHHHHHHTSCCHHHHC
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999986925288999999979496678886799999999999999999999999998
No 144
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=81.42 E-value=1.6 Score=22.70 Aligned_cols=49 Identities=8% Similarity=0.026 Sum_probs=35.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999998399499999986342999988755899944899999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
+..+-..+--.+.|..++|+.+|||.+++..+..++...=...+....+
T Consensus 19 a~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~ 67 (191)
T 3on4_A 19 AEALIQKDGYNAFSFKDIATAINIKTASIHYHFPSKEDLGVAVISWHTD 67 (191)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999997395637799999987829446876069899999988999999
No 145
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=81.23 E-value=2.3 Score=21.72 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=32.0
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHC
Q ss_conf 83994999999863429999887558-----99944899999999928
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETG-----KSTINIDNMIILAHTLD 74 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G-----~~~~~~~~l~~la~al~ 74 (83)
...+|+.++|+.+|||+..+.+||+. +.......|..+.+.++
T Consensus 36 ~~~~Tl~eI~~~lgiSreRVRQie~~Al~kLr~~~~~~~L~~yl~~~~ 83 (87)
T 1tty_A 36 GKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSLMD 83 (87)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 996579999989598899999999999999867078899999998634
No 146
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=81.14 E-value=1.7 Score=22.48 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=26.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
.+-.++.-.|+|.+|+|+.+|+|.+++...
T Consensus 29 ~vi~L~~~~~ls~~EIA~~lgis~~~V~~~ 58 (113)
T 1s7o_A 29 NYIELYYADDYSLAEIADEFGVSRQAVYDN 58 (113)
T ss_dssp HHHHHHHHTCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 999999997312999999989799999999
No 147
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=81.13 E-value=1 Score=23.86 Aligned_cols=43 Identities=12% Similarity=0.053 Sum_probs=32.1
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9839949999998634299998875589994489999999992
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
--.+.|..++|+.+|||++++..+..++...=...+..+...+
T Consensus 41 G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~ 83 (214)
T 2oer_A 41 GAQRFTTARVAERAGVSIGSLYQYFPNKAAILFRLQSDEWRRT 83 (214)
T ss_dssp --CCCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9451779999999890998999881999999999999999999
No 148
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=80.94 E-value=3 Score=20.99 Aligned_cols=43 Identities=16% Similarity=0.008 Sum_probs=34.1
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9839949999998634299998875589994489999999992
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
--.+.|..++|+.+|+|++++..+-..+...-...+..+.+.+
T Consensus 27 G~~~~s~~~IA~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~ 69 (197)
T 2f07_A 27 GLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAENLLTHT 69 (197)
T ss_dssp CTTTCCHHHHHHHHTSCHHHHHHHCSSSTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9140769999998786911588864999999999999999999
No 149
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=80.90 E-value=1.8 Score=22.35 Aligned_cols=56 Identities=11% Similarity=0.213 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCC---C---CHHHHHHHHHHHC
Q ss_conf 99999999999998399499999986-3429999887558999---4---4899999999928
Q gi|254781147|r 19 RMIFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKST---I---NIDNMIILAHTLD 74 (83)
Q Consensus 19 ~~~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~~~---~---~~~~l~~la~al~ 74 (83)
-..++.+|+...+..+++|+-+|+.+ |.|+.++|.+-+.-.. . .-++..++-.-|+
T Consensus 19 T~~I~~~v~~eL~~~~I~Q~~Fa~~VL~rSQGtlSdLL~~PKPW~kl~~~gr~~y~RM~~wL~ 81 (101)
T 1wh6_A 19 TLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLS 81 (101)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHHSCCCTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999994986999999998208378999984799878874864488999999965
No 150
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=80.55 E-value=1.9 Score=22.18 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=32.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 9999999998399499999986342999988755899944899999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~ 68 (83)
+..+-.-+--.+.|..++|+.+|||++++..+...+...-...+..
T Consensus 16 a~~l~~~~G~~~~t~~~Ia~~agvs~~t~y~~F~sK~~L~~~~~~~ 61 (197)
T 2gen_A 16 ALACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLA 61 (197)
T ss_dssp HHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHH
T ss_conf 9999997592517799999985839211345079878999999999
No 151
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis 89}
Probab=80.33 E-value=1.4 Score=22.98 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=26.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-|..+....++|+.++|+.+++++++++++
T Consensus 36 vL~~l~~~~~~t~~~la~~l~i~~~tvs~~ 65 (142)
T 3bdd_A 36 ILQTLLKDAPLHQLALQERLQIDRAAVTRH 65 (142)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999998779989999999989698689999
No 152
>2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A*
Probab=80.17 E-value=2.4 Score=21.63 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=35.8
Q ss_pred HHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 9999999999--983994999999863429999887558999448999999999
Q gi|254781147|r 21 IFVNNFRNIR--KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 (83)
Q Consensus 21 ~~g~~ir~~R--~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~a 72 (83)
++..-++-.. --.+.|..++|+.+|+|++++..+..++...=...+..+.+.
T Consensus 21 Il~aA~~lf~~~G~~~~si~~Ia~~agvs~~tiy~yF~sK~~L~~~~~~~~~~~ 74 (213)
T 2qtq_A 21 LLQTASNIMREGDVVDISLSELSLRSGLNSALVKYYFGNKAGLLKALLDRDMEN 74 (213)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999999973934178999999979499999998798999999899999999
No 153
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281, TETR transcriptional regulator, PSI-2; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=79.74 E-value=2 Score=22.04 Aligned_cols=40 Identities=8% Similarity=-0.070 Sum_probs=29.8
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 9983994999999863429999887558999448999999
Q gi|254781147|r 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 (83)
Q Consensus 30 R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~l 69 (83)
.--.+.|..++|+.+|||++++..+..++...=...+...
T Consensus 59 ~G~~~~ti~~IA~~aGvS~~tlY~yF~sKe~L~~a~~~~~ 98 (229)
T 3bni_A 59 VGYDALSTRAVALRADVPIGSVYRFFGNKRQMADALAQRN 98 (229)
T ss_dssp HCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 4901067999999959699999998699999999999999
No 154
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=79.67 E-value=1.4 Score=22.91 Aligned_cols=29 Identities=17% Similarity=0.412 Sum_probs=24.5
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-++.+|+ ..+|..|||+.+|+|+++++++
T Consensus 25 il~~l~~-gpiSR~eLa~~tgLS~~Tvs~i 53 (380)
T 2hoe_A 25 ILKRIMK-SPVSRVELAEELGLTKTTVGEI 53 (380)
T ss_dssp SHHHHHH-SCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHH-CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999980-9959999998889599999999
No 155
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50
Probab=79.59 E-value=1.6 Score=22.60 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=22.8
Q ss_pred HHHHH-HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999-983994999999863429999887
Q gi|254781147|r 26 FRNIR-KEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 26 ir~~R-~~~gltq~ela~~~gis~~~is~i 54 (83)
+..+. ....+|+.|+|+.+|+++++++++
T Consensus 27 L~~L~~~~~~~t~~eia~~~~~~~~tvs~~ 56 (109)
T 2d1h_A 27 LLKMVEIEKPITSEELADIFKLSKTTVENS 56 (109)
T ss_dssp HHHHHHHCSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999997598989999999989788589999
No 156
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV}
Probab=79.41 E-value=1.7 Score=22.43 Aligned_cols=34 Identities=9% Similarity=0.026 Sum_probs=27.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHCC
Q ss_conf 99999999839949999998634299998-87558
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWIS-ELETG 57 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is-~iE~G 57 (83)
+.+-.+|.-.|+|.+|+|+.+|+|.+++. ++-++
T Consensus 21 r~v~~l~~~~g~s~~EIA~~lgis~~tvk~~l~Ra 55 (70)
T 2o8x_A 21 REALLLTQLLGLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999899909999999999897999999999999
No 157
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1
Probab=78.91 E-value=1.7 Score=22.42 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=35.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999839949999998634299998875589994489999999992
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
+..+-.-.--.+.|..++|+.+|+|++++..+..++...-...+..+.+.+
T Consensus 21 A~~l~~~~G~~~~t~~~IA~~aGvs~~~ly~~F~sK~~L~~a~~~~~~~~~ 71 (200)
T 2hyj_A 21 AAEIASEEGLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLDKAFVDF 71 (200)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999739151889999998781978895544899999999999999999
No 158
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=78.87 E-value=0.85 Score=24.27 Aligned_cols=62 Identities=11% Similarity=0.150 Sum_probs=37.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 969888888689899999999999999999983---99499999986342999988755899944899999
Q gi|254781147|r 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEA---KLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 (83)
Q Consensus 1 Mp~~~~~~p~~~~~~~~~~~~~g~~ir~~R~~~---gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~ 68 (83)
|||.+..... + . +..+-..-..+=.++ +.|..++|+.+|||++++..+..++...=...+..
T Consensus 4 M~r~r~~~~e--~--~--r~~Il~aa~~lf~e~G~~~~t~~~Ia~~agvs~~tlY~~F~~K~~L~~a~~~~ 68 (203)
T 3ccy_A 4 MARTRSADYE--N--I--RDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDMLTT 68 (203)
T ss_dssp --------CT--T--H--HHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTTTCSCHHHHHHHHHHH
T ss_pred CCCCCCCCHH--H--H--HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHH
T ss_conf 9999988889--9--9--99999999999998494527899999985898677302489999999999999
No 159
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=78.77 E-value=1.7 Score=22.51 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=24.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-|..+...-++|+.++|+.+|+++++++++
T Consensus 47 vL~~l~~~~~~t~~~La~~l~~~~~~vs~~ 76 (150)
T 2rdp_A 47 ALQWLLEEGDLTVGELSNKMYLACSTTTDL 76 (150)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999779959999999989688789999
No 160
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=78.67 E-value=3.4 Score=20.67 Aligned_cols=31 Identities=6% Similarity=0.094 Sum_probs=25.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999983994999999863429999887
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-..|-.+ .+.|+++.++|.+.+||.+++++|
T Consensus 23 R~rIv~l-~~~G~s~~~Iar~l~Vs~~~V~ki 53 (128)
T 1pdn_C 23 RLKIVEM-AADGIRPCVISRQLRVSHGCVSKI 53 (128)
T ss_dssp HHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999999-986999999999889689999999
No 161
>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=78.53 E-value=1.7 Score=22.53 Aligned_cols=30 Identities=17% Similarity=0.105 Sum_probs=25.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-|..+.+..+.|+.++|+.+|++++++|++
T Consensus 49 vL~~l~~~~~~t~~eLa~~l~i~~~tvs~~ 78 (154)
T 2eth_A 49 AFLYVALFGPKKMKEIAEFLSTTKSNVTNV 78 (154)
T ss_dssp HHHHHHHHCCBCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999869949999999989798899999
No 162
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative stress, transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=78.40 E-value=2 Score=22.12 Aligned_cols=48 Identities=8% Similarity=0.034 Sum_probs=33.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 9999999983994999999863429999887558999448999999999289
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i 75 (83)
+.+-.++.-.|+|.+|+|+.+|+|.+++....+. ....|.+..+..|+
T Consensus 43 r~vi~l~~~~g~s~~eIA~~lgis~~tV~~~l~R----a~~~Lr~~l~~~G~ 90 (92)
T 3hug_A 43 RAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHY----AVRALRLTLQELGV 90 (92)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHH----HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH----HHHHHHHHHHHHCC
T ss_conf 9999999993999999999989699999999999----99999999998389
No 163
>1tlh_B Sigma-70, RNA polymerase sigma factor RPOD; anti-sigma, transcription; NMR {Escherichia coli} SCOP: a.4.13.2
Probab=78.06 E-value=1.7 Score=22.48 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3994999999863429999887558
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~iE~G 57 (83)
.-+|.+++|+.+|||+..|.+||..
T Consensus 37 ~~~tl~eIa~~lgvSrerVRQie~~ 61 (81)
T 1tlh_B 37 TDYTLEEVGKQFDVTRERIRQIEAK 61 (81)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 8557999999989799999999999
No 164
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50
Probab=77.96 E-value=2.4 Score=21.62 Aligned_cols=31 Identities=6% Similarity=0.200 Sum_probs=26.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999983994999999863429999887
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
.-+..+....+.|+.++|+.+|+++++++++
T Consensus 24 ~v~~~L~~~~~~t~~eia~~~~~~~~~v~~~ 54 (109)
T 1sfx_A 24 RIYSLLLERGGMRVSEIARELDLSARFVRDR 54 (109)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 9999998048887999999975670189999
No 165
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=77.89 E-value=1.9 Score=22.21 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=26.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999983994999999863429999887
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
+.+-.++.-.|+|..|+|+.+|+|++++...
T Consensus 31 R~v~~l~~~e~ls~~EIA~~lgiS~~aV~~~ 61 (113)
T 1xsv_A 31 RNYLELFYLEDYSLSEIADTFNVSRQAVYDN 61 (113)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999999991999999999989699999999
No 166
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=77.81 E-value=3.8 Score=20.40 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 9999999999998--3994999999863429999887558999448999999
Q gi|254781147|r 20 MIFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 (83)
Q Consensus 20 ~~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~l 69 (83)
.++-.-++-+.+. .+.|..++|+.+|||.+++..+...+...=...+...
T Consensus 27 ~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~Ll~~~~~~~ 78 (214)
T 2zb9_A 27 EVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYKWWPSKGALALDGYFHA 78 (214)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999999985935087999999979298887450899999999999999
No 167
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=77.79 E-value=2.1 Score=22.00 Aligned_cols=49 Identities=10% Similarity=0.006 Sum_probs=34.5
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999839949999998634299998875589994489999999992
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
.+-.-+--.+.|.+++|+.+|||++++.++..++...-...+.....-+
T Consensus 19 ~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~ 67 (194)
T 2g7s_A 19 TLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEA 67 (194)
T ss_dssp HHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999749574779999998782921331158999999999999999999
No 168
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genomics, PSI-2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=77.69 E-value=1.6 Score=22.67 Aligned_cols=47 Identities=11% Similarity=0.042 Sum_probs=33.4
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99999983994999999863429999887558999448999999999
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~a 72 (83)
+-.-+--.+.|..++|+.+|||++++..+..++...-...+....+.
T Consensus 29 l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sKe~Ll~~~~~~~~~~ 75 (207)
T 2rae_A 29 LFTEQGFDATSVDEVAEASGIARRTLFRYFPSKNAIPWGDFDAHLAE 75 (207)
T ss_dssp HHHHHCTTTSCHHHHHHHTTSCHHHHHHHCSSTTTGGGCSHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99972913067999999979198899888799999899999999999
No 169
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=77.67 E-value=2.5 Score=21.53 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=25.1
Q ss_pred HHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998------3994999999863429999887
Q gi|254781147|r 23 VNNFRNIRKE------AKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 23 g~~ir~~R~~------~gltq~ela~~~gis~~~is~i 54 (83)
...|+.++.. .++|+.++|+.+|+|+++++++
T Consensus 10 ~~aLk~L~~~~~~~~~~~ls~~eLa~~l~is~~tvsr~ 47 (230)
T 3cta_A 10 YRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRI 47 (230)
T ss_dssp HHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999999736415799858999999988788899999
No 170
>3lwj_A Putative TETR-family transcriptional regulator; structural genomics, joint center for structural genomics, JCSG; 2.07A {Syntrophomonas wolfei subsp}
Probab=77.55 E-value=2.7 Score=21.29 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999998--39949999998634299998875589994489999999992
Q gi|254781147|r 21 IFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 21 ~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
++..-+.-+.+. .+.|..++|+.+|||++++..+..++...=...+..+.+.+
T Consensus 17 Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~Ke~L~~~~~~~~~~~~ 71 (202)
T 3lwj_A 17 ILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLEDFAKQI 71 (202)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999998709551759999998792999998866999999999999999987
No 171
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} SCOP: a.4.1.17
Probab=77.48 E-value=1.3 Score=23.17 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=23.3
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98399499999986342999988755
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~ 56 (83)
.....||+++|+-+|||+.++.+|.+
T Consensus 45 ~g~k~T~~eiAeEvGvsr~TLy~Wk~ 70 (155)
T 2ao9_A 45 NEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp -CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 73364799999995746999998860
No 172
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=77.30 E-value=2 Score=22.10 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=25.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-|..+....++|+.++|+.+|++.++++++
T Consensus 36 iL~~l~~~~~~t~~~la~~l~~~~~~vs~~ 65 (145)
T 3g3z_A 36 VLYTLATEGSRTQKHIGEKWSLPKQTVSGV 65 (145)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999879949999999989698899999
No 173
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=77.16 E-value=1.9 Score=22.25 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=24.5
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999983994999999863429999887
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
|..+....|+|+.++|+.+|++.++++++
T Consensus 35 L~~i~~~~~~t~~eLa~~~~~~~~~vs~~ 63 (138)
T 3bpv_A 35 LLRIHREPGIKQDELATFFHVDKGTIART 63 (138)
T ss_dssp HHHHHHSTTCBHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99998589979999999989798799999
No 174
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=77.12 E-value=4 Score=20.29 Aligned_cols=33 Identities=12% Similarity=-0.002 Sum_probs=25.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 839949999998634299998875589994489
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G~~~~~~~ 64 (83)
...+|.+++|+.+|+|.++++++-+.....+..
T Consensus 16 ~~~~~~~~la~~~~~S~~~l~r~fk~~~g~s~~ 48 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRSRGYSPM 48 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHHTSSCHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHH
T ss_conf 899999999999891999999999999891968
No 175
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=77.02 E-value=4 Score=20.27 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999998--39949999998634299998875589994489999999992
Q gi|254781147|r 21 IFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 21 ~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
++..-++-+.+. .+.|..++|+.+|||.+++..+..++...-...+..+...+
T Consensus 45 Il~Aa~~l~~e~G~~~~T~~~IA~~AgvS~~tlY~yF~sKe~Ll~~~~~~~~~~~ 99 (225)
T 2id3_A 45 VLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRRWGTPGGLAADLLADMAEQS 99 (225)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999849340779999999790988871018999999999999999999
No 176
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=76.87 E-value=1.7 Score=22.52 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=26.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999983994999999863429999887
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
.-|..+....++|+.++|+.+|+++++++++
T Consensus 44 ~vL~~L~~~~~~t~~~la~~l~i~~~~vsr~ 74 (148)
T 3nrv_A 44 RIISVLSSASDCSVQKISDILGLDKAAVSRT 74 (148)
T ss_dssp HHHHHHHHSSSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999999779979999999989699899999
No 177
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=76.77 E-value=0.51 Score=25.60 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 399499999986342999988755899944899999999
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
.+.|..++|+.+|+|++++..+..++...=...+....+
T Consensus 32 ~~~t~~~IA~~agvs~~tiY~~F~sK~~L~~~~~~~~~~ 70 (217)
T 3nrg_A 32 DSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIE 70 (217)
T ss_dssp GGCCHHHHHHHHTCCTTGGGGTCSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 407799999985888235888648999999999999999
No 178
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=76.69 E-value=2.6 Score=21.37 Aligned_cols=31 Identities=6% Similarity=-0.052 Sum_probs=27.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998399499999986342999988
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISE 53 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~ 53 (83)
-..|+..-...++.+.+.|+.+|||++++.+
T Consensus 60 ~~~I~~aL~~~~gn~~~aA~~LGisR~tL~~ 90 (98)
T 1eto_A 60 QPLLDMVMQYTLGNQTRAALMMGINRGTLRK 90 (98)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999999999199889999997989999999
No 179
>2o7t_A Transcriptional regulator; NP_600854.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=76.58 E-value=4.1 Score=20.23 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=29.7
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 9839949999998634299998875589994489999999
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la 70 (83)
--.+.|..++|+.+|||++++.++..++...-...+..+.
T Consensus 25 G~~~~t~~~IA~~agvs~~tiY~~F~sK~~L~~av~~~~~ 64 (199)
T 2o7t_A 25 HHDSLTMENIAEQAGVGVATLYRNFPDRFTLDMACAQYLF 64 (199)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9140779999998686913177608999999999999999
No 180
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=76.54 E-value=2.6 Score=21.38 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=24.6
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999998399499999986342999988755
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~ 56 (83)
|..++ ..|+|..++|+.+|+|.+++.+|-+
T Consensus 151 i~~l~-~~g~s~~~Ia~~l~vs~sTv~R~l~ 180 (183)
T 1gdt_A 151 VLNMW-QQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHH-HCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999-8699999999998939999999987
No 181
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum sensing, DNA-binding; 2.30A {Xanthomonas campestris PV}
Probab=76.50 E-value=1.3 Score=23.16 Aligned_cols=21 Identities=10% Similarity=0.355 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 994999999863429999887
Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 34 gltq~ela~~~gis~~~is~i 54 (83)
.+||+++|..+|+|+.+++++
T Consensus 187 ~lt~~~lA~~lg~sr~tv~R~ 207 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRV 207 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
T ss_conf 789999999979989999999
No 182
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa}
Probab=76.13 E-value=2.1 Score=21.98 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=25.5
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-|..+...-+.|+.++|+.++++.++++++
T Consensus 43 vL~~l~~~~~~t~~eLa~~~~~~~~~vs~~ 72 (140)
T 2nnn_A 43 ALVRLGETGPCPQNQLGRLTAMDAATIKGV 72 (140)
T ss_dssp HHHHHHHHSSBCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCCHHHH
T ss_conf 999999879909999999878573529999
No 183
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 3loc_A*
Probab=76.13 E-value=3.7 Score=20.50 Aligned_cols=53 Identities=9% Similarity=0.071 Sum_probs=34.0
Q ss_pred HHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999--9839949999998634299998875589994489999999992
Q gi|254781147|r 21 IFVNNFRNIR--KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 21 ~~g~~ir~~R--~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
++-.-+.-+. --.+.|..++|+.+|||.+++..+...+-..=...+..+.+.+
T Consensus 23 Il~aA~~lf~~~G~~~~si~~IA~~agvs~~tiY~yF~sKe~L~~~~~~~~~~~~ 77 (212)
T 1pb6_A 23 ILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIW 77 (212)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999859152889999999791987897877999999998789999999
No 184
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=75.97 E-value=1.8 Score=22.28 Aligned_cols=54 Identities=7% Similarity=0.023 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999999839949999998634299998875589994489999999992
Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
.++-.-+..+.+.-+.|..++|+.+|||++++..+..++...-...+....+.+
T Consensus 18 ~Il~aA~~l~~~~G~~T~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 71 (190)
T 2v57_A 18 AILDAAMLVLADHPTAALGDIAAAAGVGRSTVHRYYPERTDLLRALARHVHDLS 71 (190)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999998699739999999890999997773899999999999999999
No 185
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=75.97 E-value=2.3 Score=21.69 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=24.9
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-|..+....++|+.++|+.+++++++++++
T Consensus 38 vL~~i~~~~~~t~~ela~~~~~~~~~vs~~ 67 (145)
T 2a61_A 38 ILQKIYFEGPKRPGELSVLLGVAKSTVTGL 67 (145)
T ss_dssp HHHHHHHHCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999998779989999999989798789999
No 186
>2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} SCOP: a.35.1.7 PDB: 2o49_A*
Probab=75.88 E-value=4.3 Score=20.08 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCCC------CHHHHHHHHHHHCCCHHH
Q ss_conf 999999999998399499999986-34299998875589994------489999999992899999
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKSTI------NIDNMIILAHTLDTPLWK 79 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~~~~------~~~~l~~la~al~i~~~~ 79 (83)
.++..|+...+..+++|+-+|+.+ |.|+.++|.+-+....| .-.++.++-.-|+.|-.+
T Consensus 11 eI~~~i~~eL~~~~I~Q~~Fak~VL~rsQGtlSdLLr~Pk~pw~~~~sgre~f~Rm~~wL~lPe~~ 76 (93)
T 2o4a_A 11 EIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEAE 76 (93)
T ss_dssp THHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 999999999998576499999999810705899998389996177652359999999998284999
No 187
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=75.87 E-value=3.5 Score=20.60 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=22.3
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 983994999999863429999887
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83)
...|++..++|++.+||.+++++|
T Consensus 38 ~~~G~s~r~IArrl~VS~stV~ki 61 (159)
T 2k27_A 38 AHQGVRPCDISRQLRVSHGCVSKI 61 (159)
T ss_dssp HHHTCCHHHHHHHHTCCSHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 986999999999889599999999
No 188
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=75.83 E-value=1.6 Score=22.71 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=25.8
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-|..+....++|+.++|+.+|+++++++++
T Consensus 52 vL~~l~~~~~~~~~eLa~~l~~~~~tvs~~ 81 (153)
T 2pex_A 52 VMLVLWETDERSVSEIGERLYLDSATLTPL 81 (153)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999998479989999999989688689999
No 189
>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=75.82 E-value=2.3 Score=21.72 Aligned_cols=30 Identities=30% Similarity=0.328 Sum_probs=26.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999998399499999986342999988
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISE 53 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~ 53 (83)
+-|+.+.+...+|..++|+.+|+|.+++.+
T Consensus 21 ~IL~~Lq~d~R~s~~eIA~~lgls~~tv~~ 50 (171)
T 2ia0_A 21 NILRLLKKDARLTISELSEQLKKPESTIHF 50 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999984899999999998909999999
No 190
>1yse_A DNA-binding protein SATB1; all helical, DNA-binding domain, T-cell development; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=75.81 E-value=2.1 Score=21.97 Aligned_cols=58 Identities=17% Similarity=0.112 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCC------CCHHHHHHHHHHHCCCHH
Q ss_conf 999999999998399499999986-3429999887558999------448999999999289999
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKST------INIDNMIILAHTLDTPLW 78 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~~~------~~~~~l~~la~al~i~~~ 78 (83)
.+..+|+...+..+++|+-+|+.+ |.|+.++|.+-+.-.. -.-+++.++-.-|+.|..
T Consensus 25 ~i~~~v~~eL~~~~I~Q~~Fa~~vl~rsQgtlsdLL~~PKpp~~~~~~gre~f~RM~~wL~~pe~ 89 (141)
T 1yse_A 25 EIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEA 89 (141)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHCCSCTTHHHHHHHHCCCGGGCCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 99999999999848779999999982281889999858998566618778999999999828188
No 191
>3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=75.67 E-value=4.2 Score=20.15 Aligned_cols=47 Identities=15% Similarity=0.022 Sum_probs=32.5
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 99999998399499999986342999988755899944899999999
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
.+-.-+--.+.|..++|+.+|||++++..+..++...-...+....+
T Consensus 25 ~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~~K~~L~~~~~~~~~~ 71 (199)
T 3crj_A 25 RALREHGYADLTIQRIADEYGKSTAAVHYYYDTKDDLLAAFLDYLLE 71 (199)
T ss_dssp HHHHHHTTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99997490407799999997919999988858999999999999999
No 192
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=75.67 E-value=2.3 Score=21.69 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=25.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999998399499999986342999988
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISE 53 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~ 53 (83)
+-|+.+++.-.+|..++|+.+|+|++++.+
T Consensus 11 ~Il~~L~~n~R~s~~~ia~~~gls~~tv~~ 40 (150)
T 2w25_A 11 ILVRELAADGRATLSELATRAGLSVSAVQS 40 (150)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999983899999999998929899999
No 193
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=75.63 E-value=2.3 Score=21.67 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=26.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999983994999999863429999887
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
.-|..+....++|+.++|+.+|+++++++++
T Consensus 38 ~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~ 68 (138)
T 1jgs_A 38 KVLCSIRCAACITPVELKKVLSVDLGALTRM 68 (138)
T ss_dssp HHHHHHHHHSSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999998779989999999989788799999
No 194
>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=75.60 E-value=1.3 Score=23.20 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=26.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-+..+....|+||.++|+.+|++.++++++
T Consensus 45 vL~~l~~~~~~t~~eLa~~~~i~~~tit~~ 74 (147)
T 1z91_A 45 ALLLLWEHETLTVKKMGEQLYLDSGTLTPM 74 (147)
T ss_dssp HHHHHHHHSEEEHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999779949999999979788789999
No 195
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=75.45 E-value=4.3 Score=20.11 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=38.4
Q ss_pred CCCHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 68989999999-9999999999983994999999863429999887558999448999999
Q gi|254781147|r 10 HLSDAILRERM-IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 (83)
Q Consensus 10 ~~~~~~~~~~~-~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~l 69 (83)
+++.+..+++. .-+..+-.-+--.+.|..++|+.+|+|.+++.++..+|...=...+...
T Consensus 2 ~~~~~~trerIl~AA~~l~~~~G~~~~t~~~IA~~aGvs~~~lY~yF~sK~~Ll~av~~~~ 62 (235)
T 2fbq_A 2 HMAQSETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRF 62 (235)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTCSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9992899999999999999985904077999999979398899998599999999999999
No 196
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=75.40 E-value=2.8 Score=21.24 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=24.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8399499999986342999988755899944
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G~~~~~ 62 (83)
+..+|.+++|+.+|+|.++++++-+.....+
T Consensus 17 ~~~l~l~~lA~~~~~s~~~l~r~fk~~~g~s 47 (103)
T 3lsg_A 17 DSQFTLSVLSEKLDLSSGYLSIMFKKNFGIP 47 (103)
T ss_dssp CTTCCHHHHHHHTTCCHHHHHHHHHHHHSSC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 9998999999998929999999999988909
No 197
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=75.31 E-value=2.5 Score=21.46 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=36.2
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCH
Q ss_conf 998399499999986342999988755899944899999999928999
Q gi|254781147|r 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 (83)
Q Consensus 30 R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~ 77 (83)
+--.+.|..++|+.+|+|++++..+..++...-...+..+.+.+.-.+
T Consensus 20 ~G~~~~s~~~IA~~AGvs~~siY~yF~~K~~L~~a~~~~~~~~~~~~~ 67 (185)
T 2yve_A 20 YSLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMHELLADDWDKEL 67 (185)
T ss_dssp SCSTTCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 690517799999986838531306689999999999999999999999
No 198
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=75.26 E-value=1.5 Score=22.79 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH----------HC-CCCC---CCHHHHHHHHH
Q ss_conf 3994999999863429999887----------55-8999---44899999999
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL----------ET-GKST---INIDNMIILAH 71 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~i----------E~-G~~~---~~~~~l~~la~ 71 (83)
..+||+++|..+|+|+.+++++ +. |+.. .+.+.|..+|+
T Consensus 162 ~~lt~~~lA~~lg~sr~tvsr~l~~L~~~g~I~~~~r~~i~i~d~~~L~~~a~ 214 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRGHYTIPNLVRLKAAAD 214 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTTCEECSSHHHHHHTC-
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEEECCHHHHHHHHC
T ss_conf 88469999999799899999999999988999988999699899999999856
No 199
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii atcc 33406}
Probab=75.08 E-value=0.99 Score=23.88 Aligned_cols=51 Identities=14% Similarity=0.007 Sum_probs=35.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999839949999998634299998875589994489999999992
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
+..+-.-.--.+.|..++|+.+|||++++.++-..+...=...+....+.+
T Consensus 20 A~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~yF~sK~~L~~a~~~~~~~~~ 70 (216)
T 3f0c_A 20 AQKRFAHYGLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVF 70 (216)
T ss_dssp HHHHHHHHCSSSCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999749030789999998598852798757999999999899899999
No 200
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A
Probab=74.97 E-value=2.5 Score=21.52 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=25.9
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999998399499999986342999988
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISE 53 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~ 53 (83)
+-|+.+.+.-.+|..++|+++|+|.+++.+
T Consensus 14 ~Il~~L~~d~R~s~~eiA~~~gls~~tv~~ 43 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERVALSPSPCLR 43 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999983799999999998929999999
No 201
>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
Probab=74.92 E-value=2.3 Score=21.69 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=25.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999998399499999986342999988
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISE 53 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~ 53 (83)
+-|+.+.+.-.+|..++|+.+|+|.+++++
T Consensus 13 ~Il~~L~~d~R~s~~eia~~lgls~~tv~~ 42 (151)
T 2dbb_A 13 QLVKILSENSRLTYRELADILNTTRQRIAR 42 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999885999999999998969999999
No 202
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=74.88 E-value=2.7 Score=21.28 Aligned_cols=32 Identities=6% Similarity=-0.000 Sum_probs=26.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999983994999999863429999887
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
...|...-.+.+.++...|+.+|||++++.+-
T Consensus 270 ~~~I~~aL~~~~gn~~~aA~~LGisR~tLyrk 301 (304)
T 1ojl_A 270 KEVILAALEKTGGNKTEAARQLGITRKTLLAK 301 (304)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999999992998999999988899999998
No 203
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, TETR family, transcription; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=74.84 E-value=3.3 Score=20.75 Aligned_cols=47 Identities=13% Similarity=0.024 Sum_probs=35.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 99999999983994999999863429999887558999448999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~l 69 (83)
+..+-.-+--.+.|..++|+.+|+|++++..+..++...-...+..+
T Consensus 16 A~~lf~~~G~~~~ti~~IA~~agvs~~tiY~~F~sK~~L~~~~~~~~ 62 (186)
T 2jj7_A 16 AKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKY 62 (186)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999985914177999999869698899778789789999999999
No 204
>2zdb_A Transcriptional regulator, CRP family; CAMP-binding domain, winged helix-turn-helix, thermus thermophilus DNA-binding, plasmid; 2.00A {Thermus thermophilus}
Probab=74.82 E-value=1.3 Score=23.26 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHH------------HCCC-CCCCHHHHHHHHH
Q ss_conf 994999999863429999887------------5589-9944899999999
Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISEL------------ETGK-STINIDNMIILAH 71 (83)
Q Consensus 34 gltq~ela~~~gis~~~is~i------------E~G~-~~~~~~~l~~la~ 71 (83)
.+||+++|..+|+|+.+++++ .+|+ ...+.+.|.++|.
T Consensus 139 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~I~d~~~L~~~A~ 189 (195)
T 2zdb_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIATAYRRVYLLDLAALEREAG 189 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETTEEEECCHHHHHHHHS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHHC
T ss_conf 887999998879979999999999998898997099999978999999846
No 205
>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=74.76 E-value=4.1 Score=20.19 Aligned_cols=33 Identities=6% Similarity=0.149 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999839-94999999863429999887
Q gi|254781147|r 22 FVNNFRNIRKEAK-LTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 22 ~g~~ir~~R~~~g-ltq~ela~~~gis~~~is~i 54 (83)
.-.-|..++...+ +|-.+||+.+|||+++|.+-
T Consensus 23 ~~~Il~~L~~~~~~vs~~eLa~~l~vS~~TIrrd 56 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQD 56 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999999998599676999999979899999999
No 206
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus}
Probab=74.70 E-value=3.1 Score=20.91 Aligned_cols=32 Identities=13% Similarity=0.003 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999983994999999863429999887
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
...|...-...++++.+.|+.+||+++++.+.
T Consensus 21 ~~~I~~aL~~~~gn~s~aA~~Lgi~r~tL~~k 52 (63)
T 3e7l_A 21 KIFIEEKLREYDYDLKRTAEEIGIDLSNLYRK 52 (63)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999999991998999999989799999999
No 207
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=74.70 E-value=1.7 Score=22.47 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3994999999863429999887558
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~iE~G 57 (83)
..+|++|+|+..|||+..|++||+.
T Consensus 394 ~~~Tl~EIg~~lgvSreRVrQIe~k 418 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENK 418 (438)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 8503999999989799999999999
No 208
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA- binding, transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=74.59 E-value=1.4 Score=22.93 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHC-CC-----------CCCCHHH-----HHHHHHHHCCCHHHH
Q ss_conf 99499999986342999988755-89-----------9944899-----999999928999996
Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISELET-GK-----------STINIDN-----MIILAHTLDTPLWKL 80 (83)
Q Consensus 34 gltq~ela~~~gis~~~is~iE~-G~-----------~~~~~~~-----l~~la~al~i~~~~l 80 (83)
.||..|+|+.+|||..+|.-||. |- +.-+... ..+.++.+|+|+.+.
T Consensus 2 ~msI~e~a~~~gvs~~tLRyYe~~GLl~p~~r~~~gyR~Y~~~dl~~L~~I~~lr~~G~sL~eI 65 (142)
T 3gp4_A 2 SLNIKEASEKSGVSADTIRYYERIGLIPPIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEAL 65 (142)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHTSSCCCCBCTTSCBCBCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CEEHHHHHHHHCCCHHHHHHHHHCCCCCCHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 5049999999894989999999879997255268995441098999999999999869989999
No 209
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, 2Fe-2S; HET: DNA; 2.80A {Escherichia coli K12} PDB: 2zhh_A
Probab=74.52 E-value=1.5 Score=22.84 Aligned_cols=51 Identities=27% Similarity=0.344 Sum_probs=34.9
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCC-----------CCCCC-----HHHHHHHHHHHCCCHHHH
Q ss_conf 9983994999999863429999887558-----------99944-----899999999928999996
Q gi|254781147|r 30 RKEAKLTQKEIRNRTGFAQSWISELETG-----------KSTIN-----IDNMIILAHTLDTPLWKL 80 (83)
Q Consensus 30 R~~~gltq~ela~~~gis~~~is~iE~G-----------~~~~~-----~~~l~~la~al~i~~~~l 80 (83)
+.+.-||..|+|+++|||.++|.-||.- .+.-+ .-.+.+.++.+|+++.+.
T Consensus 7 ~~~~~mtIgEvA~~~gvs~~tLR~YE~~GLl~p~R~~~gyR~Y~~~dv~~l~~I~~lr~~g~sl~eI 73 (154)
T 2zhg_A 7 RIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATI 73 (154)
T ss_dssp ---CCBCHHHHHHHHTSCHHHHHHHHHTTSSCCEECTTSCEEBCTTHHHHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 2244707999999988499999999988799997179986451568889999999999917989999
No 210
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA-binding, repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=74.46 E-value=3.1 Score=20.92 Aligned_cols=49 Identities=8% Similarity=-0.040 Sum_probs=34.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999998399499999986342999988755899944899999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
+..+-.-+--.+.|..++|+.+|||++++.++-.++...=...+..+.+
T Consensus 12 a~~l~~~~G~~~~si~~Ia~~agvs~~tiY~~F~sKe~L~~~~~~~~~~ 60 (189)
T 3geu_A 12 AITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFD 60 (189)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHTTCCHHHHTTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999997593648699999987909988700089899999999999999
No 211
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=74.45 E-value=1.9 Score=22.22 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 999999999998--3994999999863429999887558999448999999999
Q gi|254781147|r 21 IFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 (83)
Q Consensus 21 ~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~a 72 (83)
++-.-++-+.+. .+.|..++|+.+|||++++..+...+...=...+..+.+.
T Consensus 36 Il~aA~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sKe~L~~a~~~~~~~~ 89 (218)
T 3dcf_A 36 IIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDE 89 (218)
T ss_dssp HHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHH
T ss_conf 999999999984935178999999819893410241497069999999999888
No 212
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=74.38 E-value=4 Score=20.30 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=23.4
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98399499999986342999988755
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~ 56 (83)
.+.|.++.++|...||+.++|++|-+
T Consensus 35 ~e~G~s~~~vAre~gi~~stl~~W~k 60 (87)
T 2elh_A 35 IHDGESKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp HHHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 98799999999997979989999999
No 213
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=74.38 E-value=1.8 Score=22.35 Aligned_cols=31 Identities=13% Similarity=0.007 Sum_probs=26.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999983994999999863429999887
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
.-|..+....|.|+.++|+.+|++.++++++
T Consensus 56 ~iL~~l~~~~~~t~~~La~~~~~~~~~vsr~ 86 (162)
T 3cjn_A 56 RALAILSAKDGLPIGTLGIFAVVEQSTLSRA 86 (162)
T ss_dssp HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999998479989999999989798899999
No 214
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A
Probab=74.32 E-value=1.7 Score=22.42 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=24.8
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-|..+....+.|+.++|+.+|++.++++++
T Consensus 42 iL~~l~~~~~~t~~~La~~l~i~~~~vsr~ 71 (142)
T 3ech_A 42 VLKLIDEQRGLNLQDLGRQMCRDKALITRK 71 (142)
T ss_dssp HHHHHHHTTTCCHHHHHHHHC---CHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999779989999999989698799999
No 215
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution; 1.70A {Pseudomonas fluorescens pf-5}
Probab=74.16 E-value=1.5 Score=22.87 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 4999999863429999887558999448
Q gi|254781147|r 36 TQKEIRNRTGFAQSWISELETGKSTINI 63 (83)
Q Consensus 36 tq~ela~~~gis~~~is~iE~G~~~~~~ 63 (83)
||.+.|+.+||.++.||+.-+..+++.+
T Consensus 15 ~Q~k~A~~lGV~Q~AIsKAlragR~I~v 42 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVRAGRSIEI 42 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCCEEEE
T ss_conf 5889999919758999999975981799
No 216
>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=74.13 E-value=2.5 Score=21.47 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=25.9
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999998399499999986342999988
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISE 53 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~ 53 (83)
+-|+.+.+.-..|..++|+.+|+|.+++.+
T Consensus 11 ~IL~~L~~d~R~s~~~iA~~lglS~~tv~~ 40 (151)
T 2cyy_A 11 KIIKILQNDGKAPLREISKITGLAESTIHE 40 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999984899999999998919999999
No 217
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=73.94 E-value=1.6 Score=22.68 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 94999999863429999887558
Q gi|254781147|r 35 LTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 35 ltq~ela~~~gis~~~is~iE~G 57 (83)
|+..|+|+.+|+|..+|.-||.-
T Consensus 1 M~Ige~Ak~~gvs~~tlRyYe~~ 23 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEEK 23 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHC
T ss_conf 97899999989199999999997
No 218
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=73.89 E-value=1.9 Score=22.21 Aligned_cols=30 Identities=10% Similarity=0.030 Sum_probs=25.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-|..+...-++|+.++|+.+|++.++++++
T Consensus 46 vL~~L~~~~~~t~~~La~~l~~~~~tvs~~ 75 (154)
T 2qww_A 46 MINVIYSTPGISVADLTKRLIITGSSAAAN 75 (154)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999779989999999979787579999
No 219
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=73.87 E-value=3.5 Score=20.66 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=27.9
Q ss_pred HHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999---8399499999986342999988755899944
Q gi|254781147|r 23 VNNFRNIRK---EAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 (83)
Q Consensus 23 g~~ir~~R~---~~gltq~ela~~~gis~~~is~iE~G~~~~~ 62 (83)
.+-+..+.. +..+|.+++|+.+|+|+++++++-+-....+
T Consensus 6 ~~~~~~i~~~~~~~~~~l~~lA~~~~~s~~~l~r~fk~~~g~s 48 (107)
T 2k9s_A 6 REACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGIS 48 (107)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 9999999975679997999999998929999999999998919
No 220
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus dk 1622}
Probab=73.71 E-value=0.97 Score=23.92 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC--CCCCC-----------C---HHHHHH---HHHHHCCCHHHH
Q ss_conf 399499999986342999988755--89994-----------4---899999---999928999996
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELET--GKSTI-----------N---IDNMII---LAHTLDTPLWKL 80 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~iE~--G~~~~-----------~---~~~l~~---la~al~i~~~~l 80 (83)
..++..|+|+.+||+.++|..||. |-..| + +..+.. +++..|.++.+.
T Consensus 4 ~~y~I~eva~~~gvs~~tlR~ye~~~gl~~p~r~~~~g~R~Y~~~~i~~l~~I~~l~~~~G~si~~i 70 (81)
T 2jml_A 4 MTLRIRTIARMTGIREATLRAWERRYGFPRPLRSEGNNYRVYSREEVEAVRRVARLIQEEGLSVSEA 70 (81)
T ss_dssp CCEEHHHHHHTTSTTHHHHHHHHHHTCCSCCBSSSCSSSCEECHHHHHHHHHHHHHHHHTSTHHHHH
T ss_pred CEEEHHHHHHHHCCCHHHHHHHHHHCCCCCCEEECCCCCEECCHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 5355999999988599999999982699986256899736678999999999999999869989999
No 221
>3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=73.60 E-value=1.5 Score=22.89 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=31.4
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 98399499999986342999988755899944899999999
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
--.++|..++|+.+|||++++..+-.++...-...+..+.+
T Consensus 21 G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~Ll~~~~~~~~~ 61 (170)
T 3egq_A 21 PPHEVSIEEIAREAKVSKSLIFYHFESKQKLLEEAVMHAFR 61 (170)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 92406799999984899687064289999999999999999
No 222
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=73.50 E-value=1.7 Score=22.43 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=25.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999998399499999986342999988
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISE 53 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~ 53 (83)
+-|+.+++.-.+|..++|+.+|+|.+++.+
T Consensus 7 ~Il~~L~~d~R~s~~eia~~lg~s~~tv~~ 36 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRIPKATLSY 36 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999984899999999998939999999
No 223
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=73.47 E-value=2.6 Score=21.36 Aligned_cols=29 Identities=14% Similarity=0.152 Sum_probs=23.7
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999983994999999863429999887
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
|..+...-++|+.++|..++++++++|++
T Consensus 55 L~~l~~~~~~t~~~La~~l~i~~~~vs~~ 83 (162)
T 2fa5_A 55 ITILALYPGSSASEVSDRTAMDKVAVSRA 83 (162)
T ss_dssp HHHHHHSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99998679989999999978787159999
No 224
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=73.23 E-value=4.4 Score=20.02 Aligned_cols=52 Identities=10% Similarity=-0.087 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999999998--399499999986342999988755899944899999999
Q gi|254781147|r 20 MIFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 20 ~~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
.++..-++...+. .+.|..++|+.+|||++++..+..+|...-...+....+
T Consensus 11 ~Il~AA~~lf~e~G~~~~s~~~IA~~AGvs~~~iy~yF~sK~~L~~a~~~~~~~ 64 (213)
T 3ni7_A 11 AIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADS 64 (213)
T ss_dssp HHHHHHHHHHHHSCSTTCCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 999999999998697687899999990999999987469975216899887899
No 225
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=73.21 E-value=2.9 Score=21.10 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=25.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999998399499999986342999988
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISE 53 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~ 53 (83)
+-|+.+.+....|..++|+.+|+|++++.+
T Consensus 8 ~Il~~L~~d~r~s~~~ia~~~gls~~tv~~ 37 (141)
T 1i1g_A 8 IILEILEKDARTPFTEIAKKLGISETAVRK 37 (141)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999984898999999998929999999
No 226
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=73.13 E-value=2.5 Score=21.52 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=25.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-|..+...-+.|+.++|+.+|+++++++++
T Consensus 42 iL~~l~~~~~~t~~~La~~l~i~~~~vs~~ 71 (143)
T 3oop_A 42 VLEGIEANEPISQKEIALWTKKDTPTVNRI 71 (143)
T ss_dssp HHHHHHHHSSEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999998689979999999989699799999
No 227
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=73.13 E-value=5.1 Score=19.67 Aligned_cols=52 Identities=10% Similarity=0.056 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999999998--399499999986342999988755899944899999999
Q gi|254781147|r 20 MIFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 20 ~~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
.++..-+.-+.+. .+.|..++|+.+|||++++.++..++-..=...+..+.+
T Consensus 16 ~Il~aA~~lf~~~G~~~~t~~~Ia~~agvs~~tlY~~F~~Ke~L~~~~~~~~~~ 69 (205)
T 1rkt_A 16 EILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIETGLD 69 (205)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 999999999997491518799999986898574115789999999999999999
No 228
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=73.03 E-value=3.4 Score=20.70 Aligned_cols=28 Identities=11% Similarity=-0.107 Sum_probs=23.1
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9998399499999986342999988755
Q gi|254781147|r 29 IRKEAKLTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 29 ~R~~~gltq~ela~~~gis~~~is~iE~ 56 (83)
.+.-.|+|.+|+|+.+|+|.+++++.-+
T Consensus 119 ~~~~~g~s~~EIA~~lgis~~~V~~~~~ 146 (164)
T 3mzy_A 119 TYLIRGYSYREIATILSKNLKSIDNTIQ 146 (164)
T ss_dssp HHHTTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 7656238999999998919999999999
No 229
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=72.97 E-value=4.7 Score=19.87 Aligned_cols=39 Identities=13% Similarity=0.053 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 399499999986342999988755899944899999999
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
-+.|..++|+.+|||.+++..+..+|-.+=...+.....
T Consensus 34 ~~~T~~~IA~~aGvs~~tlY~~F~sKe~L~~a~~~~~~~ 72 (199)
T 2rek_A 34 ADASLEEIARRAGVGSATLHRHFPSRWGLLQAVFQERVA 72 (199)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 788899999997919999987758998899999999999
No 230
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA- binding, nucleotide-binding, transcription; HET: CMP; 1.66A {Escherichia coli k-12} PDB: 3fwe_A 1g6n_A* 2cgp_A* 3hif_A 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 1hw5_A* 1ruo_A* 1i6x_A* 1cgp_A* 1o3t_A* ...
Probab=72.73 E-value=1.9 Score=22.26 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 994999999863429999887
Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 34 gltq~ela~~~gis~~~is~i 54 (83)
.+||+++|..+|+|+.+++++
T Consensus 217 ~lt~~~LA~~lG~sr~tvsR~ 237 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRI 237 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
T ss_conf 689999999979989999999
No 231
>3g1l_A Transcriptional regulatory repressor protein (TETR-family) EThr; DNA-binding, transcription regulation; HET: RF2; 1.70A {Mycobacterium tuberculosis} PDB: 3g1o_A*
Probab=72.66 E-value=0.99 Score=23.88 Aligned_cols=39 Identities=8% Similarity=0.122 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 399499999986342999988755899944899999999
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
.+.|..++|+.+|||.+++..+..+|...-...+..+.+
T Consensus 63 ~~~Tl~~IA~~aGvs~~tlY~~F~sK~~L~~av~~~~~~ 101 (256)
T 3g1l_A 63 ADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVN 101 (256)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 517699999998909999988828899999999999999
No 232
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=72.64 E-value=2 Score=22.06 Aligned_cols=21 Identities=24% Similarity=0.397 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 994999999863429999887
Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 34 gltq~ela~~~gis~~~is~i 54 (83)
.+||+++|..+|+++.+++++
T Consensus 193 ~lt~~~LA~~lGisr~tvsR~ 213 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRL 213 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHH
T ss_conf 525999988879999999999
No 233
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=72.38 E-value=5.3 Score=19.56 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 999999999998--399499999986342999988755899944899999999
Q gi|254781147|r 21 IFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 21 ~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
++..-++-+.+. .+.|..++|+.+|||++++..+..++...=...+..+.+
T Consensus 13 Il~aa~~l~~~~G~~~~s~~~IA~~agvs~~~~Y~~F~sK~~L~~~~~~~~~~ 65 (194)
T 3dpj_A 13 IVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYHFKTKDEILAEVIRLRLA 65 (194)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999997492518899999986829126888759999999999999999
No 234
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=72.37 E-value=3.1 Score=20.91 Aligned_cols=29 Identities=14% Similarity=0.424 Sum_probs=25.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999998399499999986342999988
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISE 53 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~ 53 (83)
-|..+.+.-.+|..++|+.+|+|.+++.+
T Consensus 10 Il~~L~~n~R~s~~eiA~~~g~s~~tv~~ 38 (144)
T 2cfx_A 10 IIEELKKDSRLSMRELGRKIKLSPPSVTE 38 (144)
T ss_dssp HHHHHHHCSCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99999983899999999998929899999
No 235
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=72.11 E-value=2 Score=22.12 Aligned_cols=29 Identities=10% Similarity=0.280 Sum_probs=25.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999839949999998634299998
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWIS 52 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is 52 (83)
+-|+.+.+...+|..++|+.+|+|.+++.
T Consensus 7 ~IL~~L~~d~R~s~~eiA~~lglS~~tv~ 35 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLSTTPCW 35 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999998489999999999892999999
No 236
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=71.87 E-value=1.9 Score=22.14 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.8
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 83994999999863429999887
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~i 54 (83)
+.++|+.++|+.+|+++++++++
T Consensus 55 ~~~~t~~eLa~~l~i~~stvs~~ 77 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRL 77 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99909999999989688699999
No 237
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structure initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=71.77 E-value=2.1 Score=21.95 Aligned_cols=49 Identities=8% Similarity=0.066 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 9999999999983994999999863429999887558999448999999
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~l 69 (83)
++-.-.+-+.+.-+.|..++|+.+|||.+++..+..+|..+=...+..+
T Consensus 16 Il~aA~~lf~e~G~~S~~~IA~~aGvs~~tlY~yF~sKe~L~~av~~~~ 64 (213)
T 2g7g_A 16 IAEAALELVDRDGDFRMPDLARHLNVQVSSIYHHAKGRAAVVELVRHRV 64 (213)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHTTSCHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999999829862999999969687789988799899999999999
No 238
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=71.74 E-value=0.81 Score=24.41 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=31.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 96988888868989999999999999999-9983994999999863429999887
Q gi|254781147|r 1 MPRRKRDEPHLSDAILRERMIFVNNFRNI-RKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 1 Mp~~~~~~p~~~~~~~~~~~~~g~~ir~~-R~~~gltq~ela~~~gis~~~is~i 54 (83)
||....+.|..++...+.-..-..-|..+ ....++|..|+|+.+|++++++.++
T Consensus 4 ~p~d~~~~p~~~~~gv~sl~Ral~ILe~l~~~~~~~~l~eia~~lgl~~sT~~Rl 58 (260)
T 2o0y_A 4 VPTDSAEKPAVADAGVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRL 58 (260)
T ss_dssp --------------CCHHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999777987778864299999999999974799989999999979199999999
No 239
>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV}
Probab=71.70 E-value=2.8 Score=21.18 Aligned_cols=30 Identities=7% Similarity=0.110 Sum_probs=24.9
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-|..+...-++|+.++|+.+|++.++++++
T Consensus 50 vL~~l~~~~~~~~~eLa~~l~i~~~~vs~~ 79 (168)
T 2nyx_A 50 TLVILSNHGPINLATLATLLGVQPSATGRM 79 (168)
T ss_dssp HHHHHHHHCSEEHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999679969999999989698899999
No 240
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=71.69 E-value=2.3 Score=21.71 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=25.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-|..+....++|+.++|+.+++++++++++
T Consensus 42 vL~~l~~~~~~t~~ela~~~~~~~~~vs~~ 71 (155)
T 1s3j_A 42 VLASLKKHGSLKVSEIAERMEVKPSAVTLM 71 (155)
T ss_dssp HHHHHHHHSEEEHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999869979999999989699899999
No 241
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=71.68 E-value=2.4 Score=21.61 Aligned_cols=31 Identities=6% Similarity=0.106 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998399499999986342999988
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISE 53 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~ 53 (83)
...|+..-+..++.+.+.|+.+||+++++.+
T Consensus 53 r~lI~~aL~~~~Gn~~~AA~~LGI~R~TL~~ 83 (91)
T 1ntc_A 53 RTLLTTALRHTQGHKQEAARLLGWGAATLTA 83 (91)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999999999689599999997989999999
No 242
>2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A
Probab=71.67 E-value=3.3 Score=20.78 Aligned_cols=45 Identities=9% Similarity=-0.048 Sum_probs=31.7
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 999999839949999998634299998875589994489999999
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la 70 (83)
+-.-.--.+.|..++|+.+|||++++.++..++-..=...+..+.
T Consensus 19 l~~~~G~~~~t~~~IA~~agvs~~~lY~~F~sKe~L~~~~~~~~~ 63 (192)
T 2zcm_A 19 LFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVENCF 63 (192)
T ss_dssp HHHHHCTTTCCHHHHHHHTTCCHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999749262779999998890988997887999999999999999
No 243
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* 1rpw_A* ...
Probab=71.47 E-value=2.9 Score=21.11 Aligned_cols=49 Identities=10% Similarity=-0.053 Sum_probs=34.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999998399499999986342999988755899944899999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
+..+-.-+--.+.|..++|+.+|||++++..+-.++...=...+....+
T Consensus 11 A~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~ 59 (194)
T 3bqz_B 11 AKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEES 59 (194)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999997693306799999997909998814378999999999999899
No 244
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1
Probab=71.19 E-value=3.3 Score=20.77 Aligned_cols=46 Identities=9% Similarity=-0.125 Sum_probs=32.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 9999999998399499999986342999988755899944899999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~ 68 (83)
+..+-.-+--.++|..++|+.+|+|.+++..+..+|...=...+..
T Consensus 17 A~~l~~e~G~~~~t~~~IA~~agvs~~tlY~~F~sKe~L~~av~~~ 62 (202)
T 2d6y_A 17 AVAEFARHGIAGARIDRIAAEARANKQLIYAYYGNKGELFASVLEK 62 (202)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999997590408799999997909889968869999999999999
No 245
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=71.11 E-value=3.5 Score=20.60 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=23.9
Q ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999983-994999999863429999887
Q gi|254781147|r 24 NNFRNIRKEA-KLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 24 ~~ir~~R~~~-gltq~ela~~~gis~~~is~i 54 (83)
.-|..+-... .+|+.++|+.+|++.++++++
T Consensus 39 ~vL~~i~~~~g~~t~~ela~~~~~~~~tvs~~ 70 (147)
T 2hr3_A 39 VVLGAIDRLGGDVTPSELAAAERMRSSNLAAL 70 (147)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999997699989999999989798799999
No 246
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein structure initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=71.04 E-value=1.4 Score=22.90 Aligned_cols=40 Identities=5% Similarity=-0.061 Sum_probs=29.5
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 9999998399499999986342999988755899944899
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~ 65 (83)
+-.-.--.+.|..++|+.+|||++++..+..++...=...
T Consensus 23 l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~a~ 62 (202)
T 2i10_A 23 LFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDLFEKT 62 (202)
T ss_dssp HHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHH
T ss_conf 9998691407699999997909999977618999999999
No 247
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=70.84 E-value=1.8 Score=22.32 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999998---39949999998634299998875589994489999999992
Q gi|254781147|r 20 MIFVNNFRNIRKE---AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 20 ~~~g~~ir~~R~~---~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
..+......+-.+ .+.|..++|+.+|||++++..+-.++...-...+..+.+.+
T Consensus 15 ~~I~~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 71 (177)
T 3kkc_A 15 VAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKELCEDLFHHL 71 (177)
T ss_dssp HHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTTTCSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999998869740769999999797877743658988999999999989999
No 248
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=70.73 E-value=2.4 Score=21.65 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH-----HCC-------C-CCCCHHHHHHHHHH
Q ss_conf 3994999999863429999887-----558-------9-99448999999999
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL-----ETG-------K-STINIDNMIILAHT 72 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~i-----E~G-------~-~~~~~~~l~~la~a 72 (83)
..+|++++|..+|+|+.+++++ +.| + .-.+.+.|..+|+-
T Consensus 176 ~~lt~~~LA~~lgisr~tvsR~l~~L~~~giI~~~~~~i~I~d~~~L~~~a~~ 228 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNLGELKHLSEQ 228 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEESCHHHHHHHHTS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHHCC
T ss_conf 88689999989799999999999999988989964999998789999998757
No 249
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Pseudomonas aeruginosa}
Probab=70.63 E-value=1.6 Score=22.58 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=35.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99999999983994999999863429999887558999448999999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~a 72 (83)
+..+-.-+--.+.|..++|+.+|+|++++..+..++...-...+..+...
T Consensus 23 A~~l~~~~G~~~~s~~~Ia~~agvs~~tlY~~F~sKe~L~~~v~~~~~~~ 72 (215)
T 3e7q_A 23 TLACLKRHGFQGASVRKICAEAGVSVGLINHHYDGKDALVAEAYLAVTGR 72 (215)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999974904077999999979398899988688899999999999988
No 250
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=70.63 E-value=2.8 Score=21.18 Aligned_cols=48 Identities=6% Similarity=-0.103 Sum_probs=35.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 999999999839949999998634299998875589994489999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la 70 (83)
+..+-.-+--.++|..++|+.+|||.++|.++..+|...=...+....
T Consensus 39 A~~lf~~~G~~~~T~~~IA~~aGvs~~tlY~~F~~K~~Ll~a~~~~~~ 86 (226)
T 2pz9_A 39 AKEEFARHGIAGARVDRIAKQARTSKERVYAYFRSKEALYAHVAERET 86 (226)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999859241889999999693875797885999999999999999
No 251
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexibility; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=70.50 E-value=2 Score=22.06 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=26.4
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999998399499999986342999988755899944
Q gi|254781147|r 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 (83)
Q Consensus 27 r~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~ 62 (83)
..+-.+.| |.+.|+.+||.++.||+--+..+++.
T Consensus 8 ~dyv~~~G--Q~k~A~~lGV~q~AIsKAlragR~I~ 41 (66)
T 2ovg_A 8 KDYAMRFG--QTKTAKDLGVYPSSINQAIHAGRKIF 41 (66)
T ss_dssp HHHHHHHC--HHHHHHHHTSCHHHHHHHHHHTCEEE
T ss_pred HHHHHHHC--HHHHHHHCCCCHHHHHHHHHCCCEEE
T ss_conf 99999978--59999990976899999997598179
No 252
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3}
Probab=70.48 E-value=2.5 Score=21.47 Aligned_cols=30 Identities=10% Similarity=0.189 Sum_probs=25.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-|..+...-++|+.+||+.+++++++++++
T Consensus 45 vL~~l~~~~~~t~~~La~~l~~~~~~is~~ 74 (152)
T 3bj6_A 45 ILEGLSLTPGATAPQLGAALQMKRQYISRI 74 (152)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999879989999999989698799999
No 253
>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=70.44 E-value=3.7 Score=20.50 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=26.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998399499999986342999988
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISE 53 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~ 53 (83)
-+-|+.+.+.-..|..++|+.+|+|.+++.+
T Consensus 30 ~~IL~~L~~d~R~s~~~iA~~lglS~~tV~~ 60 (171)
T 2e1c_A 30 KKIIKILQNDGKAPLREISKITGLAESTIHE 60 (171)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999999983899999999998919999999
No 254
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=70.25 E-value=2.4 Score=21.62 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=25.2
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999983994999999863429999887
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
+..+....++|+.|+|+.+|++.+++|+.
T Consensus 22 L~~L~~~~~~t~~eLa~~l~is~~~vs~~ 50 (100)
T 1ub9_A 22 MIFLLPRRKAPFSQIQKVLDLTPGNLDSH 50 (100)
T ss_dssp HHHHHHHSEEEHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99985189983999999989199899999
No 255
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H 1ku2_A 3lev_A* 3les_A*
Probab=69.79 E-value=1.4 Score=22.94 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=22.8
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 83994999999863429999887558
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G 57 (83)
...+|++|+|+..|||+..|++||.-
T Consensus 378 ~~~~Tl~EIg~~lgvSreRVrQIe~~ 403 (423)
T 2a6h_F 378 GREHTLEEVGAFFGVTRERIRQIENK 403 (423)
T ss_dssp C-----CHHHHSSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 98603999999989799999999999
No 256
>2l1p_A DNA-binding protein SATB1; PSI-2, NESG, structural genomics, protein structure initiati northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=69.53 E-value=2.6 Score=21.34 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 999999999983994999999863429999887558999448
Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 (83)
Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~ 63 (83)
+-..++.+ -+.|+|..||+.|-++++.||.|-|+..-.++
T Consensus 22 VrnAlk~L--LkemnQS~LakecpLsQSmiSsIVNstyyanv 61 (83)
T 2l1p_A 22 VRNALKDL--LKDMNQSSLAKECPLSQSMISSIVNSTYYANV 61 (83)
T ss_dssp HHHHHHHH--HTTSCHHHHHHHSSSCHHHHHHHHTCSSCCCC
T ss_pred HHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEC
T ss_conf 99999999--99961888877088189999999844000203
No 257
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=69.47 E-value=4.1 Score=20.22 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=26.8
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 98399499999986342999988755899944899
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~ 65 (83)
....+|.+++|+.+|+|.+++++.-+.....+...
T Consensus 20 ~~~~~~~~~lA~~~~~s~~~l~r~fk~~~g~s~~~ 54 (113)
T 3oio_A 20 IEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSK 54 (113)
T ss_dssp SSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHH
T ss_conf 58999999999998919999999998607999999
No 258
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus}
Probab=69.45 E-value=1.9 Score=22.14 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.4
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 983994999999863429999887
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83)
...|+|+.++|+.+++++++++++
T Consensus 44 ~~~~~t~~ela~~l~~~~~tvs~~ 67 (139)
T 3eco_A 44 QQDGLTQNDIAKALQRTGPTVSNL 67 (139)
T ss_dssp TTTCEEHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999969999999989688789999
No 259
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=69.32 E-value=2.5 Score=21.44 Aligned_cols=48 Identities=10% Similarity=-0.055 Sum_probs=34.3
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 999999839949999998634299998875589994489999999992
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
+-.-+--.+.|..++|+.+|||.+++..+..++-..-...+..+.+.+
T Consensus 21 lf~~~G~~~~ti~~Ia~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~ 68 (203)
T 3cdl_A 21 EFGDRGFEITSMDRIAARAEVSKRTVYNHFPSKEELFAEMLQRLWNCA 68 (203)
T ss_dssp HHHHHCTTTCCHHHHHHHTTSCHHHHHTTSSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999759050789999998685955255218986999999999999999
No 260
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=69.20 E-value=2 Score=22.01 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.0
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 983994999999863429999887
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83)
...++|+.|+|+.+|++++++|++
T Consensus 38 ~~~p~t~~eLa~~l~is~s~vs~~ 61 (152)
T 1ku9_A 38 SDKPLTISDIMEELKISKGNVSMS 61 (152)
T ss_dssp CSSCEEHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 698929999999989688579999
No 261
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=69.07 E-value=2.3 Score=21.69 Aligned_cols=49 Identities=10% Similarity=-0.050 Sum_probs=30.8
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCC-CCCC-----------CHHH-----HHHHHHHHCCCHHHH
Q ss_conf 83994999999863429999887558-9994-----------4899-----999999928999996
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETG-KSTI-----------NIDN-----MIILAHTLDTPLWKL 80 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G-~~~~-----------~~~~-----l~~la~al~i~~~~l 80 (83)
...+|..++|+.+|||..+|.-||.- --.| +.+. ..+.++.+|+++.+.
T Consensus 2 ~~~Y~Igeva~~~gvs~~TLRyYe~~GLl~P~~r~~~gyR~Yt~~dl~~l~~I~~lr~~G~sl~eI 67 (146)
T 3hh0_A 2 SLAWLISEFASVGDVTVRALRYYDKINLLKPSDYTEGGHRLYTKDDLYVLQQIQSFKHLGFSLGEI 67 (146)
T ss_dssp -CCBCHHHHHHHHTCCHHHHHHHHHTTSSCCSEECTTSCEEBCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 987739999999895988999999879989770089997226899999999999999969999999
No 262
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=68.86 E-value=2.7 Score=21.27 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 994999999863429999887
Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 34 gltq~ela~~~gis~~~is~i 54 (83)
.+||+++|..+|+++.+++++
T Consensus 175 ~lt~~~iA~~lg~sr~tvsR~ 195 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRV 195 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
T ss_conf 769999998869989999999
No 263
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=68.86 E-value=4.1 Score=20.24 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=25.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999998399499999986342999988
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISE 53 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~ 53 (83)
+-|+.+.+.-.+|..++|+.+|+|.+++.+
T Consensus 12 ~Il~~L~~d~R~s~~~ia~~lg~s~~tv~~ 41 (152)
T 2cg4_A 12 GILEALMGNARTAYAELAKQFGVSPETIHV 41 (152)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999984899999999998919999999
No 264
>3dv8_A Transcriptional regulator, CRP/FNR family; RER070207001219, structural genomics, joint center for structural genomics, JCSG; 2.55A {Eubacterium rectale atcc 33656}
Probab=68.75 E-value=6.4 Score=19.08 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHH-----HCC-------CC-CCCHHHHHHHHH
Q ss_conf 994999999863429999887-----558-------99-944899999999
Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISEL-----ETG-------KS-TINIDNMIILAH 71 (83)
Q Consensus 34 gltq~ela~~~gis~~~is~i-----E~G-------~~-~~~~~~l~~la~ 71 (83)
.+|++++|..+|+++.+++++ +.| +. ..+.+.|..|++
T Consensus 169 ~~t~~~lA~~lg~sr~tvsr~l~~L~~~g~I~~~~~~i~I~d~~~L~~l~~ 219 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLSRGKITILDSKRLETLQR 219 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHHC
T ss_conf 899999999979899999999999998898997299999888999999844
No 265
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5}
Probab=68.30 E-value=2.5 Score=21.48 Aligned_cols=42 Identities=10% Similarity=-0.023 Sum_probs=31.2
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 983994999999863429999887558999448999999999
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~a 72 (83)
--.+.|..++|+.+|||++++..+..++...-...+....+.
T Consensus 19 G~~~~t~~~Ia~~agvs~~tiY~~F~~K~~L~~a~~~~~~~~ 60 (179)
T 2eh3_A 19 GYQGTSVEEIVKRANLSKGAFYFHFKSKEELITEIIERTHKK 60 (179)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 925076999999878496521442899999999999999999
No 266
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=68.25 E-value=0.51 Score=25.57 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=26.0
Q ss_pred HHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999----83994999999863429999887558
Q gi|254781147|r 26 FRNIRK----EAKLTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 26 ir~~R~----~~gltq~ela~~~gis~~~is~iE~G 57 (83)
|-.+|- ..++|++++|+..|||+..|++||+-
T Consensus 558 vi~~r~~~~~~~~~t~~ei~~~~~vs~~rv~qi~~~ 593 (613)
T 3iyd_F 558 VLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK 593 (613)
T ss_dssp HHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999981899999845999999989599999999999
No 267
>3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=68.02 E-value=4.2 Score=20.18 Aligned_cols=53 Identities=13% Similarity=0.026 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999--839949999998634299998875589994489999999992
Q gi|254781147|r 21 IFVNNFRNIRK--EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 21 ~~g~~ir~~R~--~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
++-.-+.-+.+ -.+.|..++|+.+|||.+++..+...+-..=...+..+...+
T Consensus 13 Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~yF~sKe~L~~av~~~~~~~~ 67 (206)
T 3dew_A 13 LMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQFACF 67 (206)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999859241789999999695988998881899999977789999999
No 268
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=67.86 E-value=3.5 Score=20.62 Aligned_cols=29 Identities=10% Similarity=-0.131 Sum_probs=24.1
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999983994999999863429999887
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
|..+....++|+.++|+.++++.++++++
T Consensus 54 L~~L~~~~~~s~~ela~~~~~~~stvs~~ 82 (207)
T 2fxa_A 54 LWIAYQLNGASISEIAKFGVMHVSTAFNF 82 (207)
T ss_dssp HHHHHHHTSEEHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999769949999999988698799999
No 269
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=67.79 E-value=3.1 Score=20.93 Aligned_cols=30 Identities=7% Similarity=0.087 Sum_probs=24.8
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-|..+...-++|+.++|+.++++.++++++
T Consensus 34 vL~~l~~~~~~t~~~La~~l~i~~~~vs~~ 63 (144)
T 1lj9_A 34 YLVRVCENPGIIQEKIAELIKVDRTTAARA 63 (144)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999998489979999999989788899999
No 270
>2fmy_A COOA, carbon monoxide oxidation system transcription regulator COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=67.64 E-value=3 Score=21.04 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH-----HCC-------C--CCCCHHHHHHHHHH
Q ss_conf 3994999999863429999887-----558-------9--99448999999999
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL-----ETG-------K--STINIDNMIILAHT 72 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~i-----E~G-------~--~~~~~~~l~~la~a 72 (83)
..+|++++|..+|+++.+++++ +.| + ...+.+.|.++|..
T Consensus 166 ~~lt~~~lA~~lg~sr~tvsr~l~~l~~~g~I~~~~~~~i~i~d~~~L~~~a~~ 219 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLLKDLQKLKEFSSG 219 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSSEEEESCHHHHHHHCC-
T ss_pred ECCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEEECCHHHHHHHHCC
T ss_conf 072499999997999999999999999889999769998998999999998678
No 271
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=67.60 E-value=2.4 Score=21.59 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=33.6
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCC-C-----------CHHH-----HHHHHHHHCCCHHHH
Q ss_conf 983994999999863429999887558999-4-----------4899-----999999928999996
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELETGKST-I-----------NIDN-----MIILAHTLDTPLWKL 80 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~G~~~-~-----------~~~~-----l~~la~al~i~~~~l 80 (83)
...-+|..|+|+.+|||.++|.-||+-.-- | +.+. ..+..+.+|.|+.+.
T Consensus 13 ~~m~ytIgevA~~~gvs~~tLRyYE~~GLl~p~~r~~ngyR~Y~~~di~~l~~I~~lr~~G~sL~eI 79 (148)
T 3gpv_A 13 NDMYYTIGQVAKMQHLTISQIRYYDKQGLFPFLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKI 79 (148)
T ss_dssp --CCBCHHHHHHHTTCCHHHHHHHHHTTCCTTCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 1577659999999895999999999879918410057886016488899999999999969999999
No 272
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=67.14 E-value=6.9 Score=18.89 Aligned_cols=47 Identities=15% Similarity=0.035 Sum_probs=33.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99999983994999999863429999887558999448999999999
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~a 72 (83)
+-.-+--.+.|..++|+.+|||++++..+...+...=...+..+.+.
T Consensus 26 lf~~~G~~~~si~~Ia~~agvs~~t~Y~~F~sK~~L~~~v~~~~~~~ 72 (220)
T 3lhq_A 26 LFSQQGVSATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIWELSESN 72 (220)
T ss_dssp HHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99974914065999999979398899988699999999999999999
No 273
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2; 2.40A {Streptomyces coelicolor A3}
Probab=67.11 E-value=1.7 Score=22.55 Aligned_cols=52 Identities=17% Similarity=0.052 Sum_probs=35.7
Q ss_pred HHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 9999999999--983994999999863429999887558999448999999999
Q gi|254781147|r 21 IFVNNFRNIR--KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 (83)
Q Consensus 21 ~~g~~ir~~R--~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~a 72 (83)
++..-+..+. --.++|..++|+.+|||.+++..+..+|...-...+..+...
T Consensus 21 Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~ 74 (237)
T 2hxo_A 21 IVGAAVELLDTVGERGLTFRALAERLATGPGAIYWHITGKAELLGAATDAVVTA 74 (237)
T ss_dssp HHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGGTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999999983935277999999878495653010889899999999999999
No 274
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28
Probab=66.93 E-value=6 Score=19.23 Aligned_cols=29 Identities=10% Similarity=0.231 Sum_probs=22.1
Q ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998--3994999999863429999887
Q gi|254781147|r 26 FRNIRKE--AKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 26 ir~~R~~--~gltq~ela~~~gis~~~is~i 54 (83)
|..+-.. ..+||.++|+.++++.++++++
T Consensus 40 L~~l~~~~~~~~t~~~La~~l~i~~~~vs~~ 70 (141)
T 3bro_A 40 IDYLSRNKNKEVLQRDLESEFSIKSSTATVL 70 (141)
T ss_dssp HHHHHHTTTSCCBHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999848999959999999989788589999
No 275
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=66.92 E-value=2.5 Score=21.50 Aligned_cols=29 Identities=7% Similarity=0.188 Sum_probs=23.4
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999983994999999863429999887
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
|..+...-|+|+.+||+.+++++++++++
T Consensus 52 L~~l~~~~~~t~~~La~~l~~~~~~vs~~ 80 (162)
T 3k0l_A 52 LSVLAAKPNLSNAKLAERSFIKPQSANKI 80 (162)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCGGGHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999779989999999989688699999
No 276
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=66.84 E-value=4.6 Score=19.91 Aligned_cols=39 Identities=5% Similarity=-0.061 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 994999999863429999887558999448999999999
Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 (83)
Q Consensus 34 gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~a 72 (83)
..|..++|+.+|+|++++.++..+|...-...+..+.+.
T Consensus 34 ~~T~~~IA~~agvs~~tiY~~F~sK~~L~~~~~~~~~~~ 72 (194)
T 2q24_A 34 DAHLERIAREAGVGSGTLYRNFPTREALIEAAYRNEVAR 72 (194)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 676999999839887469887699999999999999998
No 277
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, PSI-2, protein structure initiative; 1.80A {Cytophaga hutchinsonii atcc 33406}
Probab=66.74 E-value=0.96 Score=23.97 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=21.9
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8399499999986342999988755
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~ 56 (83)
...+||+++|..+|+|+.++|++-+
T Consensus 166 ~~~~t~~~iA~~lG~sr~tlSRi~k 190 (194)
T 3dn7_A 166 IQRVPQYLLASYLGFTPEYLSEIRK 190 (194)
T ss_dssp -------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 5697999999997998999999999
No 278
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, protein structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=66.62 E-value=5 Score=19.70 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999998--39949999998634299998875589994
Q gi|254781147|r 21 IFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTI 61 (83)
Q Consensus 21 ~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~ 61 (83)
++..-+.-+.+. .+.|..++|+.+|||++++.++..+|...
T Consensus 44 Il~AA~~l~~e~G~~~~T~~~Ia~~AGvs~~t~Y~~F~~K~~L 86 (214)
T 2guh_A 44 IVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKYFGSKEQL 86 (214)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf 9999999999839240779999999791987999987889999
No 279
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=66.13 E-value=4.2 Score=20.12 Aligned_cols=45 Identities=7% Similarity=0.058 Sum_probs=32.6
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 999983994999999863429999887558999448999999999
Q gi|254781147|r 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 (83)
Q Consensus 28 ~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~a 72 (83)
.-+--.+.|..++|+.+|||++++..+..++...=...+..+.+.
T Consensus 22 ~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~Ke~L~~~~~~~~~~~ 66 (195)
T 3pas_A 22 ADHGFSATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFYYVSDQ 66 (195)
T ss_dssp HHHHHHHCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 973934075999999869191410342999999999999999999
No 280
>3eup_A Transcriptional regulator, TETR family; structural genomics, PSI2, MCSG, protein structure initiative; 1.99A {Cytophaga hutchinsonii atcc 33406}
Probab=66.04 E-value=4.6 Score=19.94 Aligned_cols=52 Identities=12% Similarity=0.048 Sum_probs=38.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 9999999998399499999986342999988755899944899999999928
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~ 74 (83)
+..+-.-+--.+.|..++|+.+|||.+++..+...+...=...+......+.
T Consensus 20 a~~lf~~~G~~~~t~~~Ia~~agvs~~~iY~~F~sK~~L~~~~~~~~~~~~~ 71 (204)
T 3eup_A 20 TAPVFNVKGLAGTSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVK 71 (204)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999997394628899999997909999977645647999999999999999
No 281
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural genomics, PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=65.91 E-value=7.3 Score=18.74 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 39949999998634299998875589994489999999
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la 70 (83)
.+.|..++|+.+|||++++..+..++..+-...+..+.
T Consensus 60 ~~~sv~~IA~~AGvs~~t~Y~hF~sK~~Ll~av~~~~~ 97 (273)
T 3c07_A 60 DRTTMRAIAQEAGVSVGNAYYYFAGKEHLIQGFYDRIA 97 (273)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 41789999999891999999995876789999999999
No 282
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TETR family, rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=65.83 E-value=3.6 Score=20.56 Aligned_cols=49 Identities=6% Similarity=-0.018 Sum_probs=34.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99999999983994999999863429999887558999448999999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~a 72 (83)
+..+-.-+- -+.|..++|+.+|||.+++..+..+|...=...+....+.
T Consensus 29 A~~lf~e~G-~~~si~~IA~~aGvs~~tiY~hF~sK~~L~~av~~~~~~~ 77 (215)
T 2hku_A 29 ATELFLEHG-EGVPITQICAAAGAHPNQVTYYYGSKERLFVEVACAAVLR 77 (215)
T ss_dssp HHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999868-4782999999855063348885699999999999999999
No 283
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP- binding proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=65.80 E-value=3.2 Score=20.83 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9949999998634299998875
Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISELE 55 (83)
Q Consensus 34 gltq~ela~~~gis~~~is~iE 55 (83)
.+||+++|..+|+|+.+++++-
T Consensus 164 ~~t~~~iA~~lg~sr~tvsr~l 185 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVL 185 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
T ss_conf 7789999988799999999999
No 284
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=65.73 E-value=2.1 Score=21.95 Aligned_cols=34 Identities=6% Similarity=0.059 Sum_probs=26.4
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 9839949999998634299998875589994489
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~ 64 (83)
--.++|..++|+.+|||.++|..+..+|...=..
T Consensus 36 G~~~~T~~~IA~~aGvs~~tlY~hF~sKe~L~~a 69 (243)
T 2g7l_A 36 GLEKVTMRRLAQELDTGPASLYVYVANTAELHAA 69 (243)
T ss_dssp CSSSCCHHHHHHHTTSCHHHHTTTCCSHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCCCCCHHCCCCHHHHHHH
T ss_conf 9430789999998689955320039098999999
No 285
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=65.52 E-value=4.3 Score=20.11 Aligned_cols=24 Identities=25% Similarity=0.098 Sum_probs=20.9
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 983994999999863429999887
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83)
.+.++|+.++|+.+|++.++++++
T Consensus 47 ~~~~~t~~~la~~~~~~~~tvs~~ 70 (144)
T 3f3x_A 47 SEEPRSMVYLANRYFVTQSAITAA 70 (144)
T ss_dssp HHSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 919969999999989788689999
No 286
>3jsj_A Putative TETR-family transcriptional regulator; NP_821317.1, putative transcriptional regulator, structural genomics; 2.10A {Streptomyces avermitilis ma-4680}
Probab=65.33 E-value=3 Score=21.01 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 39949999998634299998875589994489999999992
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
-+.|..++|+.+|+|++++..+..++...=...+..+++.+
T Consensus 27 ~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~ 67 (190)
T 3jsj_A 27 VGIGVEALCKAAGVSKRSMYQLFESKDELLAASLKERSAAF 67 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 78879999999790999996774999999999999999999
No 287
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=65.03 E-value=2.9 Score=21.14 Aligned_cols=40 Identities=13% Similarity=0.058 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 3994999999863429999887558999448999999999
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~a 72 (83)
-+.|..++|+.+|||.+++..+..+|...-...+....+.
T Consensus 31 ~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~av~~~~~~~ 70 (196)
T 2qwt_A 31 LGVPMDEIARRAGVGAGTVYRHFPTKQALVVAVAEDRVRR 70 (196)
T ss_dssp TTSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 7888999999969499999878489999999999999999
No 288
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG; HET: MSE; 1.54A {Mesorhizobium loti MAFF303099}
Probab=64.88 E-value=3.5 Score=20.59 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=34.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999998399499999986342999988755899944899999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
+..+-.-+--.+.|..++|+.+|+|.+++..+..++...-...+..+.+
T Consensus 21 a~~lf~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~sK~~L~~~~~~~~~~ 69 (211)
T 3bhq_A 21 ATAAFISKGYDGTSMEEIATKAGASKQTVYKHFTDKETLFGEVVLSTAS 69 (211)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999998591507799999985888405877789999999999999999
No 289
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=64.86 E-value=2.8 Score=21.21 Aligned_cols=49 Identities=10% Similarity=0.076 Sum_probs=33.9
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999839949999998634299998875589994489999999992
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
.+-.-+--.++|..++|+.+|+|.+++..+..++...-...+..+.+.+
T Consensus 19 ~l~~~~G~~~~s~~~IA~~agvs~~tlY~~F~~K~~L~~~~~~~~~~~~ 67 (183)
T 1zk8_A 19 EIADANGVQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNLGIYGIKKL 67 (183)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999749250769999998891988998886999999999999999999
No 290
>2ras_A Transcriptional regulator, TETR family; YP_495839.1, predicted transcriptional regulator of TETR/ACRR family; 1.80A {Novosphingobium aromaticivorans DSM12444}
Probab=64.59 E-value=2.4 Score=21.57 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=25.7
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99839949999998634299998875589994
Q gi|254781147|r 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 (83)
Q Consensus 30 R~~~gltq~ela~~~gis~~~is~iE~G~~~~ 61 (83)
.--.+.|..++|+.+|||.+++.++..++...
T Consensus 27 ~G~~~~s~~~IA~~agvs~~t~Y~~F~sKe~L 58 (212)
T 2ras_A 27 RGGAGLTLSELAARAGISQANLSRYFETREDL 58 (212)
T ss_dssp HTSSCCCHHHHHHHHTSCHHHHTTTCSSHHHH
T ss_pred HCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 49140779999998388945441129799999
No 291
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=64.57 E-value=2.5 Score=21.45 Aligned_cols=22 Identities=5% Similarity=0.116 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3994999999863429999887
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~i 54 (83)
..+||+++|..+|+|+.+++++
T Consensus 177 l~~t~~~lA~~lg~sr~tv~r~ 198 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRI 198 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
T ss_conf 4505999988869989999999
No 292
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=64.54 E-value=6.3 Score=19.12 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=32.1
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9839949999998634299998875589994489999999992
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
--.+.|..++|+.+|||++++.++..++...-...+..+.+.+
T Consensus 27 G~~~~si~~Ia~~agvs~~tiY~yF~sK~~L~~~~~~~~~~~~ 69 (196)
T 3col_A 27 GPAGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYARETNRI 69 (196)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9140779999999691998885876999999999999999999
No 293
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=64.53 E-value=7.7 Score=18.58 Aligned_cols=62 Identities=2% Similarity=0.011 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHHHHH-HHHC---CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 989999999999999999-9983---9949999998634299998875589994489999999992
Q gi|254781147|r 12 SDAILRERMIFVNNFRNI-RKEA---KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 12 ~~~~~~~~~~~g~~ir~~-R~~~---gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
......-+..+-.-...+ -.++ +.|..++|+.+|||++++..+-..+...-...+....+.+
T Consensus 14 d~r~~~Tk~~i~~a~~~Lf~~~kG~~~~Sv~dIa~~AgVs~~t~Y~~F~sK~~L~~~v~~~~~~~~ 79 (185)
T 3o60_A 14 DLRTQKTQTKLYTVLERFYVEDRTFESISIKDLCEQARVSRATFYRHHKEIIQVIEVQILRTMQYF 79 (185)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHH
T ss_conf 778999999999999999988089310879999998788866622346989999999999999999
No 294
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=64.32 E-value=6.7 Score=18.95 Aligned_cols=33 Identities=9% Similarity=0.040 Sum_probs=25.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 8399499999986342999988755899944899
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~ 65 (83)
...+|.+++|+.+|+|.++++++-... ..+...
T Consensus 21 ~~~~~l~~lA~~~~~S~~~l~r~fk~~-g~t~~~ 53 (120)
T 3mkl_A 21 AHEWTLARIASELLMSPSLLKKKLREE-ETSYSQ 53 (120)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHT-TCCHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHC-CCCHHH
T ss_conf 899999999999893999999999983-999999
No 295
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis}
Probab=64.21 E-value=5.5 Score=19.45 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=22.4
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999983994999999863429999887
Q gi|254781147|r 27 RNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 27 r~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
+.+.....++-.|+++.+|+|++++|.-
T Consensus 34 ~~L~~~~~~~v~el~~~l~~s~stvS~H 61 (99)
T 2zkz_A 34 NELYKHKALNVTQIIQILKLPQSTVSQH 61 (99)
T ss_dssp HHHHHHSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9997789927999899888497699999
No 296
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=63.98 E-value=2.6 Score=21.38 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH-----------HCCC-CCCCHHHHHHHHH
Q ss_conf 3994999999863429999887-----------5589-9944899999999
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL-----------ETGK-STINIDNMIILAH 71 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~i-----------E~G~-~~~~~~~l~~la~ 71 (83)
..+||+++|..+|+++.+++++ ++|+ ...+.+.|..+|+
T Consensus 177 l~~t~~~iA~~lgisr~tvsR~l~~L~~~gii~~~~~i~I~d~~~L~~~a~ 227 (237)
T 3fx3_A 177 LPYDKMLIAGRLGMKPESLSRAFSRLKAAGVTVKRNHAEIEDIALLRDYAE 227 (237)
T ss_dssp CCSCTHHHHHHTTCCHHHHHHHHHHHGGGTEECCTTEEEESCHHHHHHHHC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCEEEECCHHHHHHHHC
T ss_conf 788999999886998999999999999799399799899978999999865
No 297
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.4.5.4 b.82.3.2
Probab=63.68 E-value=3.7 Score=20.45 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 994999999863429999887
Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 34 gltq~ela~~~gis~~~is~i 54 (83)
.+|++++|..+|+|+.+++++
T Consensus 186 ~~~~~~lA~~~g~sr~tv~R~ 206 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKT 206 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
T ss_conf 789999998979899999999
No 298
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=63.50 E-value=5.8 Score=19.34 Aligned_cols=47 Identities=6% Similarity=-0.014 Sum_probs=32.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 99999999983994999999863429999887558999448999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~l 69 (83)
+..+-.-.--.+.|..++|+.+|||++++..+..++...=...+..+
T Consensus 12 a~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~yF~~K~~L~~~~~~~~ 58 (208)
T 2g3b_A 12 SATAIAQRGIRGLRVNDVAEVAGVSPGLLYYHFKDRIGLLEAALNYI 58 (208)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999975915077999999979299999888699999999999999
No 299
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknown function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=63.49 E-value=2.4 Score=21.62 Aligned_cols=49 Identities=14% Similarity=0.044 Sum_probs=34.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999998399499999986342999988755899944899999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
+..+-.-+--.+.|..++|+.+|||++++..+..++-..-...+....+
T Consensus 39 A~~lf~~~G~~~~si~~IA~~Agvs~~tiY~yF~sKe~L~~~v~~~~~~ 87 (230)
T 2iai_A 39 AVQVFIERGYDGTSMEHLSKAAGISKSSIYHHVTGKEELLRRAVSRALD 87 (230)
T ss_dssp HHHHHHHHCTTTCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 9999998592627299999985829101530589999999999999999
No 300
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=63.49 E-value=8.1 Score=18.47 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=32.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 9999999998399499999986342999988755899944899999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~ 68 (83)
+..+-.-.--.+.|..++|+.+|||.+++..+..+|-..=...+..
T Consensus 32 A~~lf~~~G~~~~T~~~IA~~aGvs~~tlY~~F~sKe~Ll~a~~~~ 77 (231)
T 2zcx_A 32 ARELGTERGIREITLTDIAATVGMHKSALLRYFETREQIFLKITAE 77 (231)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999997492406799999997919889978759999999973588
No 301
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=63.33 E-value=5 Score=19.70 Aligned_cols=23 Identities=13% Similarity=-0.016 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 39949999998634299998875
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELE 55 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~iE 55 (83)
.|.+..++|..+||+.+++.+|-
T Consensus 29 ~g~~~~~va~~Lgi~~~tl~~Wv 51 (108)
T 2rn7_A 29 QWATICSIAPKIGCTPETLRVWV 51 (108)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 55519999999797999999999
No 302
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=62.91 E-value=5.6 Score=19.40 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=20.1
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999983994999999863429999887
Q gi|254781147|r 27 RNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 27 r~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
...-...| +..+.|+.+|||++++.+-
T Consensus 27 ~~aL~~~g-~~~~aA~~Lgisr~tL~rK 53 (61)
T 1g2h_A 27 KLFYAEYP-STRKLAQRLGVSHTAIANK 53 (61)
T ss_dssp HHHHHHSC-SHHHHHHHTTSCTHHHHHH
T ss_pred HHHHHHCC-CHHHHHHHHCCCHHHHHHH
T ss_conf 99999968-9999999979789999999
No 303
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=62.87 E-value=2.6 Score=21.43 Aligned_cols=29 Identities=7% Similarity=0.139 Sum_probs=23.2
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999983994999999863429999887
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
|..+....++|+.++|+.++++.++++++
T Consensus 49 L~~l~~~~~~t~~eLa~~l~~~~~tvs~~ 77 (155)
T 3cdh_A 49 LACLVDNDAMMITRLAKLSLMEQSRMTRI 77 (155)
T ss_dssp HHHHSSCSCBCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99998579969999999989699889999
No 304
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=62.80 E-value=4.3 Score=20.08 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=22.9
Q ss_pred HHHHHH-HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999-83994999999863429999887
Q gi|254781147|r 26 FRNIRK-EAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 26 ir~~R~-~~gltq~ela~~~gis~~~is~i 54 (83)
|..+.. ..++|+.++|+.+++++++++++
T Consensus 59 L~~L~~~~~~~t~~eLa~~l~i~~stvsr~ 88 (166)
T 3deu_A 59 LHNIHQLPPDQSQIQLAKAIGIEQPSLVRT 88 (166)
T ss_dssp HHHHHHSCSSEEHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999997698979999999979899899999
No 305
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=62.71 E-value=4.8 Score=19.84 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=32.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 99999999983994999999863429999887558999448999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~l 69 (83)
+..+-.-.--.+.|..++|+.+|+|++++..+-.++...=...+..+
T Consensus 14 A~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~ 60 (202)
T 2id6_A 14 AVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSV 60 (202)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999872904164999999879099999840899999999999985
No 306
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=62.62 E-value=4.3 Score=20.10 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.2
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 83994999999863429999887
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~i 54 (83)
.-++|+.++|+.+++++++++++
T Consensus 50 ~~~~t~~eL~~~~~~~~~~vs~~ 72 (146)
T 2fbh_A 50 RDSPTQRELAQSVGVEGPTLARL 72 (146)
T ss_dssp SSCCBHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999989689899999
No 307
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=62.30 E-value=4.2 Score=20.14 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=24.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-|..+....+.|+.++|+.++++.++++++
T Consensus 58 vL~~l~~~~~~t~~~la~~l~i~~~~vs~~ 87 (161)
T 3e6m_A 58 LLSSLSAYGELTVGQLATLGVMEQSTTSRT 87 (161)
T ss_dssp HHHHHHHHSEEEHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999779989999999989788799999
No 308
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=62.04 E-value=2.6 Score=21.42 Aligned_cols=49 Identities=8% Similarity=-0.004 Sum_probs=34.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999998399499999986342999988755899944899999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
+..+-.-+--.+.|..++|+.+|||.+++.++..+|...-...+....+
T Consensus 11 A~~l~~~~G~~~~T~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~ 59 (209)
T 3bqy_A 11 ALDLLNESGLDTLTMRRLAQAMDVQAGALYRYFAAKQDLLTAMAEHMVD 59 (209)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999997294516799999997948879998879989999999998888
No 309
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=61.94 E-value=7.4 Score=18.68 Aligned_cols=32 Identities=13% Similarity=-0.020 Sum_probs=26.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999998399499999986342999988755
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~iE~ 56 (83)
.+-.++.-.|+|.+++|+.+|+|.++|...-+
T Consensus 147 ~ii~l~y~~g~s~~eIA~~lg~s~~tV~~~l~ 178 (194)
T 1or7_A 147 MAITLRELDGLSYEEIAAIMDCPVGTVRSRIF 178 (194)
T ss_dssp HHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999998398999999998939999999999
No 310
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum}
Probab=61.90 E-value=2.2 Score=21.86 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=22.9
Q ss_pred HHHHH--HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999--983994999999863429999887
Q gi|254781147|r 26 FRNIR--KEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 26 ir~~R--~~~gltq~ela~~~gis~~~is~i 54 (83)
|..+. ...|+||.++|+.+|++.++++++
T Consensus 47 L~~L~~~~~~~it~~eLa~~l~~~~~~~sr~ 77 (148)
T 3jw4_A 47 IGYIYENQESGIIQKDLAQFFGRRGASITSM 77 (148)
T ss_dssp HHHHHHHTTTCCCHHHHHHC------CHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999937999939999999989778589999
No 311
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=61.90 E-value=8.6 Score=18.29 Aligned_cols=34 Identities=9% Similarity=0.144 Sum_probs=25.5
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 8399499999986342999988755899944899
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~ 65 (83)
...+|.+++|+.+|+|.++++++-.-....+...
T Consensus 19 ~~~~sl~~la~~~~~s~~~l~r~fk~~~g~s~~~ 52 (108)
T 3oou_A 19 SEGMSLKTLGNDFHINAVYLGQLFQKEMGEHFTD 52 (108)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHH
T ss_conf 8999999999998929999999999998978799
No 312
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.40A {Enterococcus faecalis V583} SCOP: a.4.1.9 a.121.1.1
Probab=61.76 E-value=2.5 Score=21.47 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 9999999999998---399499999986342999988755899944899999999928
Q gi|254781147|r 20 MIFVNNFRNIRKE---AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 (83)
Q Consensus 20 ~~~g~~ir~~R~~---~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~ 74 (83)
.++..-+.-+-++ .+.|..++|+.+|||.++|..+..+|...=...+..+.+.+.
T Consensus 9 ~Il~aA~~lf~~~~G~~~~T~~~IA~~aGvs~~~lY~hF~sKe~L~~av~~~~~~~~~ 66 (220)
T 1z0x_A 9 TIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEAIEEHFQ 66 (220)
T ss_dssp HHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 9999999999880895316799999996967878999969999999999999987633
No 313
>2qco_A CMER; transcriptional regulator protein; 2.25A {Campylobacter jejuni} PDB: 3hgg_A* 3hgy_A*
Probab=61.67 E-value=3.2 Score=20.86 Aligned_cols=52 Identities=12% Similarity=0.005 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 999999999998--3994999999863429999887558999448999999999
Q gi|254781147|r 21 IFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 (83)
Q Consensus 21 ~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~a 72 (83)
++-.-++-+.+. .+.|..++|+.+|||.+++.++..++...-...+..+++.
T Consensus 18 Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~yF~sKe~L~~~v~~~~~~~ 71 (210)
T 2qco_A 18 IKAVALELFLTKGYQETSLSDIIKLSGGSYSNIYDGFKSKEGLFFEILDDICKK 71 (210)
T ss_dssp HHHHHHHHHHHTTTTTCCHHHHHHHHCTTCTTCSSSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999999974915287999999868784068886898589999999999999
No 314
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, structural genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=61.65 E-value=5.1 Score=19.64 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=35.5
Q ss_pred HHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999--839949999998634299998875589994489999999992
Q gi|254781147|r 21 IFVNNFRNIRK--EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 21 ~~g~~ir~~R~--~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
++..-++-+.. -.+.|..++|+.+|++.+++..+..+|...-...+....+.+
T Consensus 18 Il~AA~~l~~~~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~Ll~a~~~~~~~~~ 72 (231)
T 2qib_A 18 LIGVALDLFSRRSPDEVSIDEIASAAGISRPLVYHYFPGKLSLYEAALQRASDDL 72 (231)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999739450779999999793988998884996899999999999999
No 315
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=61.30 E-value=1.2 Score=23.41 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 399499999986342999988755899944899999
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~ 68 (83)
.-++|..+|+.+|++.+.||++.++= .+....+..
T Consensus 22 a~~gq~~~Ak~~G~~eS~ISRwk~~~-~~~~smllA 56 (97)
T 1xwr_A 22 AMLGTEKTAEAVGVDKSQISRWKRDW-IPKFSMLLA 56 (97)
T ss_dssp HHHCHHHHHHHHTCCTTTHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHH
T ss_conf 99820207998498798863322207-999999999
No 316
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=61.13 E-value=4.8 Score=19.80 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=24.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHH--HHHHHHH
Q ss_conf 9999999839949999998634--2999988
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGF--AQSWISE 53 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gi--s~~~is~ 53 (83)
.|..++.+-..|+.++|+.+|| |+++|++
T Consensus 18 ILE~L~e~g~~t~~eIA~~lgi~~S~~~Vs~ 48 (111)
T 3b73_A 18 ILEIIHEEGNGSPKELEDRDEIRISKSSVSR 48 (111)
T ss_dssp HHHHHHHHSCBCHHHHHTSTTCCSCHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
T ss_conf 9999998499999999998688847999999
No 317
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=60.29 E-value=4.6 Score=19.90 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH------------HCCCC-CCCHHHHHHHHHHHC
Q ss_conf 3994999999863429999887------------55899-944899999999928
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL------------ETGKS-TINIDNMIILAHTLD 74 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~i------------E~G~~-~~~~~~l~~la~al~ 74 (83)
..+||.++|..+|+|+.+++++ ++|.. ..+.+.|.++|+.-|
T Consensus 145 ~~~t~~~iA~~lg~sr~tv~r~l~~L~~~g~I~~~~~~i~I~d~~~L~~~a~~~g 199 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLLDLKGLKELAESRG 199 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHTSCC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHHHHCC
T ss_conf 7887999998979889999999999998899997499999988999999998628
No 318
>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12}
Probab=60.20 E-value=3.3 Score=20.80 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=21.9
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999983994999999863429999887
Q gi|254781147|r 27 RNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 27 r~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
..+....+++..|+++.+|++++++|+-
T Consensus 31 ~~L~~~~~~~v~eLa~~l~~s~stvS~H 58 (99)
T 3cuo_A 31 CMLSGSPGTSAGELTRITGLSASATSQH 58 (99)
T ss_dssp HHHTTCCSEEHHHHHHHHCCCHHHHHHH
T ss_pred HHHHCCCCEEHHHHHHHHCCCHHHHHHH
T ss_conf 9985899907999774558598799999
No 319
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=60.16 E-value=9.3 Score=18.11 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999998--39949999998634299998875589994
Q gi|254781147|r 21 IFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTI 61 (83)
Q Consensus 21 ~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~ 61 (83)
++-.-++-+... .++|..++|+.+|||++++..+...+...
T Consensus 17 Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L 59 (192)
T 2fq4_A 17 ILSASYELLLESGFKAVTVDKIAERAKVSKATIYKWWPNKAAV 59 (192)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf 9999999999839440779999999891998885347899999
No 320
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=60.10 E-value=6 Score=19.24 Aligned_cols=29 Identities=10% Similarity=0.315 Sum_probs=23.4
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999983994999999863429999887
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
|..+....++|+.++|+.++++.++++++
T Consensus 42 L~~l~~~~~~~~~~la~~l~i~~~~vs~~ 70 (142)
T 2fbi_A 42 IRILRQQGEMESYQLANQACILRPSMTGV 70 (142)
T ss_dssp HHHHHHHCSEEHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999879979999999979898899999
No 321
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded) form, allostery, DNA binding; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3h3u_A*
Probab=59.82 E-value=4.8 Score=19.79 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH-----HCC-------C-CCCCHHHHHHHHH
Q ss_conf 3994999999863429999887-----558-------9-9944899999999
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL-----ETG-------K-STINIDNMIILAH 71 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~i-----E~G-------~-~~~~~~~l~~la~ 71 (83)
..+||.++|..+|+|+.+++++ +.| . .-.+.+.|.++|+
T Consensus 176 ~~~t~~~lA~~lg~s~~tvsr~l~~L~~~g~I~~~~~~i~I~d~~~L~~~a~ 227 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRAR 227 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHCC
T ss_conf 0789999998879899999999999998898996399999888999998549
No 322
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=59.59 E-value=3.4 Score=20.73 Aligned_cols=23 Identities=13% Similarity=0.227 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99499999986342999988755
Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 34 gltq~ela~~~gis~~~is~iE~ 56 (83)
.++..++|+..|||..+|..+-.
T Consensus 2 ~vNk~qlA~~fgVS~~TI~~W~~ 24 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTIQNWQE 24 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 55899999997988899999998
No 323
>3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=59.13 E-value=5 Score=19.73 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=29.8
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 999999983994999999863429999887558999448999
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l 66 (83)
.+-.-+--.+.|..++|+.+|||++++.++..++...=...+
T Consensus 22 ~l~~~~G~~~~si~~Ia~~agvs~~tiY~~F~sK~~L~~~~~ 63 (196)
T 3he0_A 22 QLIAESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVR 63 (196)
T ss_dssp HHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999973956377999999868997754021899999999999
No 324
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=58.98 E-value=5.5 Score=19.44 Aligned_cols=27 Identities=15% Similarity=0.010 Sum_probs=22.9
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 998399499999986342999988755
Q gi|254781147|r 30 RKEAKLTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 30 R~~~gltq~ela~~~gis~~~is~iE~ 56 (83)
....|+|-+|+|..+|+|..++..+-.
T Consensus 22 ~l~~G~s~~eIA~~L~iS~~TV~~h~~ 48 (74)
T 1fse_A 22 LLVQDKTTKEIASELFISEKTVRNHIS 48 (74)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999279999999997989999999999
No 325
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987}
Probab=58.59 E-value=2.1 Score=21.91 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=25.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999983994999999863429999887
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
.-|..+....++|+.++|+.++++.++++++
T Consensus 37 ~vL~~l~~~~~~t~~~La~~l~~~~~tvs~~ 67 (139)
T 3bja_A 37 GVIQVLAKSGKVSMSKLIENMGCVPSNMTTM 67 (139)
T ss_dssp HHHHHHHHSCSEEHHHHHHHCSSCCTTHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHCCCCHHHHHHH
T ss_conf 9999999869989999984708688899999
No 326
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcription regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=58.55 E-value=4.7 Score=19.86 Aligned_cols=51 Identities=12% Similarity=-0.020 Sum_probs=37.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999839949999998634299998875589994489999999992
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
+..+-.-+--.+.|..++|+.+|+|.+++.++..+|...-...+......+
T Consensus 13 A~~lf~~~G~~~~sv~~IA~~aGvs~~tlY~~F~sKe~L~~av~~~~~~~~ 63 (207)
T 2vpr_A 13 ALILLNEVGIEGLTTRKLAQKIGVEQPTLYWHVKNKRALLDALAETILQKH 63 (207)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999849352789999998784876899988988999999999999998
No 327
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A
Probab=58.37 E-value=2.1 Score=21.99 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=23.5
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999983994999999863429999887
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
|..+-...++|+.++|+.+|++.++++++
T Consensus 42 L~~l~~~~~~t~~ela~~l~~~~~tvs~~ 70 (140)
T 3hsr_A 42 LMAIENDEKLNIKKLGERVFLDSGTLTPL 70 (140)
T ss_dssp HHHSCTTCEEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99998679989999999989786479999
No 328
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional repressor; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=58.14 E-value=4.4 Score=20.05 Aligned_cols=41 Identities=2% Similarity=-0.057 Sum_probs=29.6
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 99999983994999999863429999887558999448999
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l 66 (83)
+-.-.--.+.|..++|+.+||++++|..+..+|...=...+
T Consensus 18 lf~~~G~~~~T~~~IA~~aGVs~~~lY~hF~sK~~L~~av~ 58 (234)
T 2opt_A 18 ILDAEGLDALSMRRLAQELKTGHASLYAHVGNRDELLDLVF 58 (234)
T ss_dssp HHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 99972944278999999978588899998798899999999
No 329
>2vke_A Tetracycline repressor protein class D; transcription, metal-binding, helix-turn-helix, transcription regulator, transcription regulation; HET: TAC; 1.62A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2tct_A* 2trt_A* 1qpi_A* 1a6i_A 2vkv_A* 3fk7_A* 3fk6_A* 2ns7_A 2ns8_A
Probab=57.92 E-value=6.3 Score=19.11 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=33.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999998399499999986342999988755899944899999999
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83)
+-.-+--.+.|..++|+.+|||++++..+..+|...=...+..+..
T Consensus 15 lf~~~G~~~~tv~~IA~~aGvs~~tlY~hF~sKe~L~~a~~~~~~~ 60 (207)
T 2vke_A 15 LLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILA 60 (207)
T ss_dssp HHHHHCGGGCCHHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9997491417899999997919769988789989999999999998
No 330
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=57.69 E-value=2.7 Score=21.27 Aligned_cols=48 Identities=4% Similarity=-0.017 Sum_probs=34.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 999999999839949999998634299998875589994489999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la 70 (83)
+..+-.-+--.+.|..++|+.+|||.+++..+..++...-...+..+.
T Consensus 44 A~~l~~~~G~~~~t~~~IA~~agvs~~tiY~yF~sK~~L~~~~~~~~~ 91 (237)
T 3kkd_A 44 AMRLIVRDGVRAVRHRAVAAEAQVPLSATTYYFKDIDDLITDTFALFV 91 (237)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTSCTTTC-----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999849240779999999886857798876999999999999999
No 331
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=57.57 E-value=4.7 Score=19.87 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=28.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999983994999999863429999887558999
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~ 60 (83)
..+-.-+--.+.|..++|+.+|||.+++..+..+|..
T Consensus 58 ~~lf~e~G~~~vS~~~IA~~AGVS~~t~Y~~F~sK~~ 94 (260)
T 2of7_A 58 YGLIRQQGYEATTVEQIAERAEVSPSTVLRYFPTRED 94 (260)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHH
T ss_conf 9999983945287999999969679799998599999
No 332
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=57.53 E-value=5.6 Score=19.39 Aligned_cols=46 Identities=11% Similarity=0.055 Sum_probs=31.0
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHCC
Q ss_conf 9983994999999863429999887558----999448999999999289
Q gi|254781147|r 30 RKEAKLTQKEIRNRTGFAQSWISELETG----KSTINIDNMIILAHTLDT 75 (83)
Q Consensus 30 R~~~gltq~ela~~~gis~~~is~iE~G----~~~~~~~~l~~la~al~i 75 (83)
....|+|..|+|+.+|+|.+++..+-+. -.--+...|..+|-..|+
T Consensus 27 ~l~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Klgv~~r~elv~~a~~~Gl 76 (79)
T 1x3u_A 27 AVVAGLPNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLVRMALAGGF 76 (79)
T ss_dssp HHTTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf 99907999999999798898999999999998089999999999999499
No 333
>2fd5_A Transcriptional regulator; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=57.43 E-value=6.7 Score=18.95 Aligned_cols=51 Identities=10% Similarity=0.017 Sum_probs=34.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999839949999998634299998875589994489999999992
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83)
+..+-.-+--.+.|..++|+.+|||.+++..+..++...=...+..+...+
T Consensus 16 a~~l~~~~G~~~~si~~Ia~~agvs~~~~Y~~F~sK~~L~~a~~~~~~~~~ 66 (180)
T 2fd5_A 16 ATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKR 66 (180)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999998709440679999998688976176765899999999999999999
No 334
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=57.28 E-value=10 Score=17.81 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=29.7
Q ss_pred HHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999--8399499999986342999988755899944
Q gi|254781147|r 21 IFVNNFRNIRK--EAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 (83)
Q Consensus 21 ~~g~~ir~~R~--~~gltq~ela~~~gis~~~is~iE~G~~~~~ 62 (83)
++-.-++-+.+ -.+.|..++|+.+|||.+++..+..+|...=
T Consensus 10 Il~aA~~lf~~~G~~~~t~~~Ia~~agvs~~tlY~~F~sKe~L~ 53 (228)
T 3nnr_A 10 ILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDII 53 (228)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHH
T ss_conf 99999999997393527799999988909989998878999999
No 335
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1}
Probab=57.16 E-value=4.4 Score=20.04 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 83994999999863429999887
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~i 54 (83)
..++||.|+|+.++++.+++++.
T Consensus 52 ~~~~t~~ela~~l~~~~~~vsr~ 74 (150)
T 3fm5_A 52 AEGVNQRGVAATMGLDPSQIVGL 74 (150)
T ss_dssp TTCCCSHHHHHHHTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 98989999999978878778899
No 336
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor A3}
Probab=56.90 E-value=5.4 Score=19.51 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q ss_conf 49999998634299998875
Q gi|254781147|r 36 TQKEIRNRTGFAQSWISELE 55 (83)
Q Consensus 36 tq~ela~~~gis~~~is~iE 55 (83)
...|+|+.+|+|.++|.-||
T Consensus 2 rI~elA~~~Gvs~~tLR~Ye 21 (222)
T 2dg6_A 2 RLADLSKRSGVSTATIKYYL 21 (222)
T ss_dssp CHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHH
T ss_conf 58999999895999999999
No 337
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A
Probab=56.59 E-value=5.4 Score=19.52 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=22.1
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999983994999999863429999887
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
|..+. ..++|+.++|+.+|++++++|++
T Consensus 44 L~~l~-~~~~t~~~la~~l~i~~~~vs~~ 71 (151)
T 3kp7_A 44 LNMLS-IEALTVGQITEKQGVNKAAVSRR 71 (151)
T ss_dssp HHHHH-HSCBCHHHHHHHHCSCSSHHHHH
T ss_pred HHHHH-CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99986-28999999999989688899999
No 338
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, cytoplasm, binding, transcription; HET: PAM; 1.90A {Vibrio cholerae O395}
Probab=56.53 E-value=11 Score=17.74 Aligned_cols=33 Identities=3% Similarity=-0.018 Sum_probs=25.8
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 8399499999986342999988755899944899
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~ 65 (83)
...+|.+++|+.+|+|++++++.-+- ...+...
T Consensus 183 ~~~~~l~~lA~~~~~S~~~l~r~fK~-~g~s~~~ 215 (276)
T 3gbg_A 183 TRNWRWADICGELRTNRMILKKELES-RGVKFRE 215 (276)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHT-TTCCHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH-HCCCHHH
T ss_conf 79999999999979899999999999-6988999
No 339
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=56.50 E-value=5.4 Score=19.49 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 994999999863429999887558999448999999999289999960
Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 34 gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
|-.=+.||..+|++...|..|++. .+|+...|.....--+.++..|.
T Consensus 21 g~dWr~LA~~Lgl~~~~I~~i~~~-~spt~~lL~~W~~~~~~Tv~~L~ 67 (85)
T 1ngr_A 21 GDTWRHLAGELGYQPEHIDSFTHE-ACPVRALLASWGAQDSATLDALL 67 (85)
T ss_dssp TTHHHHHHHHTTCCHHHHHHHHHS-SCHHHHHHHHGGGSTTCBHHHHH
T ss_pred CCCHHHHHHHCCCCHHHHHHHHCC-CCHHHHHHHHHHHCCCCCHHHHH
T ss_conf 776899998939899999988438-98599999999873898599999
No 340
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=56.46 E-value=9.7 Score=17.98 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=26.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999983994999999863429999887558
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G 57 (83)
.+...++.-.|.+..+||.+-|+|..+|.+|-+.
T Consensus 82 Rn~~I~~ef~G~n~~eLArkY~LS~r~I~~Ii~~ 115 (129)
T 1rr7_A 82 RDLRIWNDFNGRNVSELTTRYGVTFNTVYKAIRR 115 (129)
T ss_dssp HHHHHHHHCCSSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999908998999999989789999999999
No 341
>3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6}
Probab=56.35 E-value=4.8 Score=19.80 Aligned_cols=44 Identities=7% Similarity=0.034 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 9999999999839949999998634-2999988755899944899999
Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMII 68 (83)
Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gi-s~~~is~iE~G~~~~~~~~l~~ 68 (83)
+...|- -+...|.|..++++..|| |++++.++-+- ++.+.....
T Consensus 20 ~~e~I~-~~l~~G~sl~~i~~~~gvps~sT~~~Wl~~--~~ef~e~y~ 64 (143)
T 3hef_A 20 VADDIC-SLLSSGESLLKVCKRPGMPDKSTVFRWLAK--HEDFRDKYA 64 (143)
T ss_dssp HHHHHH-HHHHTTCCHHHHHTSTTCCCHHHHHHHTTT--CHHHHHHHH
T ss_pred HHHHHH-HHHHCCCCHHHHHHCCCCCCHHHHHHHHHH--CHHHHHHHH
T ss_conf 999999-999889859999870799968999999971--899999999
No 342
>1t33_A Putative transcriptional repressor (TETR/ACRR family); structural genomics, TETR/CCRR family, helix turn helix DNA binding domain; 2.20A {Salmonella typhimurium LT2} SCOP: a.4.1.9 a.121.1.1
Probab=56.27 E-value=11 Score=17.71 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 3994999999863429999887558999448999999
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~l 69 (83)
.+ |..++|+.+|||.+++.++..++-..=...+..+
T Consensus 31 ~~-T~~~IA~~aGvs~~~iY~~F~sKe~L~~~v~~~~ 66 (224)
T 1t33_A 31 HA-TTRDIAALAGQNIAAITYYFGSKEDLYLACAQWI 66 (224)
T ss_dssp GS-CHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 75-7999999809980212357899999999999999
No 343
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=55.67 E-value=10 Score=17.79 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=22.3
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999983994999999863429999887
Q gi|254781147|r 28 NIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 28 ~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
.+-....++..++++.+|++++++|.-
T Consensus 33 ~~L~~~~~~v~el~~~l~~s~s~vS~H 59 (106)
T 1r1u_A 33 ELLSVSEASVGHISHQLNLSQSNVSHQ 59 (106)
T ss_dssp HHHHHCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999829967999999876586589999
No 344
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=55.49 E-value=6.7 Score=18.96 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=24.8
Q ss_pred HHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999--98399499999986342999988755
Q gi|254781147|r 25 NFRNIR--KEAKLTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 25 ~ir~~R--~~~gltq~ela~~~gis~~~is~iE~ 56 (83)
++..+| .=.|-+|.++|...|+|.+.+|++.+
T Consensus 23 t~~iAr~VLV~G~~~~evA~~~Glskq~V~~~V~ 56 (101)
T 2w7n_A 23 TIEIARGVLVDGKPQATFATSLGLTRGAVSQAVH 56 (101)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHH
T ss_conf 9999999984884099999996803889999999
No 345
>2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=54.67 E-value=6.1 Score=19.21 Aligned_cols=45 Identities=4% Similarity=0.090 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 9999999999839---94999999863429999887558999448999
Q gi|254781147|r 22 FVNNFRNIRKEAK---LTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 (83)
Q Consensus 22 ~g~~ir~~R~~~g---ltq~ela~~~gis~~~is~iE~G~~~~~~~~l 66 (83)
+-.-...+-.++| +|..++|+.+|||++++..+-..+...-...+
T Consensus 18 Il~Aa~~l~~~~G~~~~Tv~~Ia~~agvs~~t~Y~yF~sKe~Ll~~~~ 65 (195)
T 2iu5_A 18 IAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYFQNQEELLSWIF 65 (195)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999976963068999999868886179887739999999999
No 346
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP}
Probab=54.37 E-value=7 Score=18.83 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=22.1
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 983994999999863429999887
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83)
...++|..|+|+.+|++++++.++
T Consensus 26 ~~~~~~~~eia~~~gl~~st~~Rl 49 (257)
T 2g7u_A 26 QRPNPTLAELATEAGLSRPAVRRI 49 (257)
T ss_dssp SCSSCBHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 799989999999879399999999
No 347
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=54.18 E-value=4.7 Score=19.87 Aligned_cols=26 Identities=8% Similarity=0.068 Sum_probs=22.4
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98399499999986342999988755
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~ 56 (83)
...|+|-+|+|+.+|+|.+++...-+
T Consensus 10 l~~G~s~~eIA~~l~iS~~TV~~h~~ 35 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRM 35 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 98279999999896989999999999
No 348
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TETR family, PSI-2, protein structure initiative; 1.70A {Streptomyces coelicolor A3}
Probab=53.98 E-value=6.5 Score=19.05 Aligned_cols=44 Identities=7% Similarity=-0.026 Sum_probs=30.8
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 99999983994999999863429999887558999448999999
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~l 69 (83)
+-.-+--.++|..++|+.+|||.+++.++..+|...=...+...
T Consensus 41 l~~e~G~~~~t~~~IA~~aGVs~~tlY~yF~sKe~Ll~av~~~~ 84 (241)
T 2hxi_A 41 LLLAGDAETFSVRKLAASLGTDSSSLYRHFRNKTELLRAVADRI 84 (241)
T ss_dssp HHSSSSCCCCCHHHHHHHTTSCHHHHHHHTSSHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99972913053999999979088899998799999999999999
No 349
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=53.88 E-value=4.6 Score=19.91 Aligned_cols=29 Identities=14% Similarity=0.386 Sum_probs=23.8
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 83994999999863429999887558999
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETGKST 60 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G~~~ 60 (83)
...+|.+++|+.+|+|.+++++.-+....
T Consensus 25 ~~~~sl~~lA~~~~~S~~~l~r~fk~~~g 53 (129)
T 1bl0_A 25 ESPLSLEKVSERSGYSKWHLQRMFKKETG 53 (129)
T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 89999999999989299999999999869
No 350
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=53.87 E-value=7.6 Score=18.64 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=22.5
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98399499999986342999988755
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~ 56 (83)
...|+|-+|+|+.+|+|..++..+-+
T Consensus 33 la~G~s~~eIA~~L~iS~~TV~~~~~ 58 (82)
T 1je8_A 33 IAQGLPNKMIARRLDITESTVKVHVK 58 (82)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99289999999897959999999999
No 351
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=53.83 E-value=12 Score=17.47 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=24.4
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999839949999998634299998875
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELE 55 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE 55 (83)
+-.--..+|+|..++|..+|+|..-+.+|-
T Consensus 23 v~hELa~~gysvqqIa~~LGVsvrKv~~YL 52 (55)
T 2x48_A 23 VAHELAKMGYTVQQIANALGVSERKVRRYL 52 (55)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHCHHHHHHHHHH
T ss_conf 999999848729999988461199999987
No 352
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=53.51 E-value=6.2 Score=19.14 Aligned_cols=23 Identities=26% Similarity=0.117 Sum_probs=19.7
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 83994999999863429999887
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~i 54 (83)
....|+.++|+.+|++.++++++
T Consensus 48 ~~~~t~~ela~~~~i~~~~vs~~ 70 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITAS 70 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 59919999999989798699999
No 353
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=53.49 E-value=2.9 Score=21.07 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=23.9
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999983994999999863429999887
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
-|..+....++|+.++|..++++.++++++
T Consensus 42 vL~~i~~~~~~t~~~la~~l~~~~~~vs~~ 71 (142)
T 2bv6_A 42 VLTILWDESPVNVKKVVTELALDTGTVSPL 71 (142)
T ss_dssp HHHHHHHSSEEEHHHHHHHTTCCTTTHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999779989999999989798799999
No 354
>2krf_A Transcriptional regulatory protein COMA; activator, competence, DNA-binding, transcription regulation component regulatory system; NMR {Bacillus subtilis}
Probab=53.36 E-value=7.5 Score=18.65 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=28.9
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHC
Q ss_conf 983994999999863429999887558----99944899999999928
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELETG----KSTINIDNMIILAHTLD 74 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~G----~~~~~~~~l~~la~al~ 74 (83)
...|+|-+|+|+.+|+|..++..+-+. -.--+...+..+|...|
T Consensus 24 ~~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Kl~v~~r~elv~~A~~~G 71 (73)
T 2krf_A 24 VEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDG 71 (73)
T ss_dssp HHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf 995899999841618889999999999999809999999999999957
No 355
>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=53.31 E-value=2.4 Score=21.61 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=19.4
Q ss_pred HHHHHHH-CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998-3994999999863429999887
Q gi|254781147|r 26 FRNIRKE-AKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 26 ir~~R~~-~gltq~ela~~~gis~~~is~i 54 (83)
|..+... .++|+.++|+.+|+++++++++
T Consensus 53 L~~L~~~~~~~t~~~La~~~~v~~~~vs~~ 82 (160)
T 3boq_A 53 MAQLARNPDGLSMGKLSGALKVTNGNVSGL 82 (160)
T ss_dssp HHHHHHCTTCEEHHHHHHHCSSCCSCHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999986899998999999989688589999
No 356
>2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=53.23 E-value=10 Score=17.85 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=21.3
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 983994999999863429999887
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83)
.+..+|..++++.+|++++++|+-
T Consensus 31 ~~~~~~v~eLa~~l~is~s~vS~H 54 (114)
T 2oqg_A 31 GRADQSASSLATRLPVSRQAIAKH 54 (114)
T ss_dssp HHSCBCHHHHHHHSSSCHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 819928999998888898899999
No 357
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=53.15 E-value=7.8 Score=18.56 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3994999999863429999887
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~i 54 (83)
..+|+.++|+.++++.++++++
T Consensus 52 ~~~t~~ela~~l~~~~~~vs~~ 73 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKA 73 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9878999999979887369999
No 358
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=52.92 E-value=5.7 Score=19.38 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9499999986342999988755
Q gi|254781147|r 35 LTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 35 ltq~ela~~~gis~~~is~iE~ 56 (83)
+|..|+|+.+|+|++.+.++-.
T Consensus 32 lt~~evA~~LGvs~~~V~~~i~ 53 (148)
T 2kfs_A 32 YDLPRVAELLGVPVSKVAQQLR 53 (148)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
T ss_conf 4899999996998899999998
No 359
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, multidrug-binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3d71_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=52.23 E-value=4 Score=20.31 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=33.2
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCC-CCCCC-----------------HHHHHHHHHHHCCCHHHH
Q ss_conf 83994999999863429999887558-99944-----------------899999999928999996
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETG-KSTIN-----------------IDNMIILAHTLDTPLWKL 80 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G-~~~~~-----------------~~~l~~la~al~i~~~~l 80 (83)
++-+|..++|+.+|+|..+|.-||.- --.|+ .-...+..+.+|+|+.+.
T Consensus 3 ~~~ysIge~akl~giS~~tLRyYd~~GLl~P~~~d~~ngYRyYs~~qi~~l~~I~~lr~lg~sL~eI 69 (278)
T 1r8e_A 3 ESYYSIGEVSKLANVSIKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEM 69 (278)
T ss_dssp CCEEEHHHHHHHHTCCHHHHHHHHHTTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTTCCHHHH
T ss_pred CCCEEHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 8863199999998859889999996889899788799997773999999999999999869989999
No 360
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, protein-DNA complex, , DNA binding protein/DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=51.98 E-value=7.8 Score=18.55 Aligned_cols=27 Identities=11% Similarity=0.184 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 994999999863429999887558999
Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISELETGKST 60 (83)
Q Consensus 34 gltq~ela~~~gis~~~is~iE~G~~~ 60 (83)
..|+.++|+..|++.++|+++-+|+..
T Consensus 135 f~S~~eaa~~~gv~~~~I~~~~~gk~~ 161 (174)
T 1u3e_M 135 YPSTKCACEELGLTRGKVTDVLKGHRI 161 (174)
T ss_dssp ESCHHHHHHHHTCCHHHHHHHHHTSSS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 689999999979898899999738876
No 361
>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=51.62 E-value=9.8 Score=17.96 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=21.6
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999983994999999863429999887
Q gi|254781147|r 28 NIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 28 ~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
.+-....++-.++|+.+|+|++++|+-
T Consensus 50 ~L~~~~~~~v~ela~~l~~s~s~vS~H 76 (122)
T 1u2w_A 50 ALCQDEELCVCDIANILGVTIANASHH 76 (122)
T ss_dssp HHHHSSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 998788927999999988873269999
No 362
>3mop_A Myeloid differentiation primary response protein; death domain complex, helical symmetry, single-stranded HELI assembly; 3.40A {Homo sapiens}
Probab=50.21 E-value=7.8 Score=18.55 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 4999999863429999887558999448999999999289999960
Q gi|254781147|r 36 TQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 36 tq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
.=+.||..+|++...|..++.. .+|+...|..+..--+.++.+|.
T Consensus 28 DWr~LA~~Lg~~~~~I~~~~~~-~sPt~~lL~~w~~~~~~Tv~~L~ 72 (110)
T 3mop_A 28 DWTALAEEMDFEYLEIRQLETQ-ADPTGRLLDAWQGRPGASVGRLL 72 (110)
T ss_dssp CHHHHHTTTTCCHHHHHHHTSS-SSHHHHHHHHHHSSSSCSHHHHH
T ss_pred CHHHHHHHCCCCHHHHHHHHCC-CCCHHHHHHHHHCCCCCCHHHHH
T ss_conf 0999998949899999988508-99499999999708998599999
No 363
>3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=50.06 E-value=9.3 Score=18.09 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.0
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9839949999998634299998875
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELE 55 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE 55 (83)
...|+|-+|+|+.+|+|..++..+-
T Consensus 39 l~~G~s~~eIA~~L~iS~~TV~~~~ 63 (95)
T 3c57_A 39 LSEGLTNKQIADRMFLAEKTVKNYV 63 (95)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9907999999879497899999999
No 364
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural genomics, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=49.74 E-value=2.8 Score=21.19 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 39949999998634299998875
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELE 55 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~iE 55 (83)
..+|+.++|..+|+|+.+++++-
T Consensus 163 ~~~t~~~iA~~lg~sr~tvsr~l 185 (213)
T 1o5l_A 163 LPVTLEELSRLFGCARPALSRVF 185 (213)
T ss_dssp -----------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 05689999999798999999999
No 365
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=49.49 E-value=1.4 Score=22.99 Aligned_cols=49 Identities=6% Similarity=0.080 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 99999999999983---99499999986342999988755899944899999
Q gi|254781147|r 20 MIFVNNFRNIRKEA---KLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 (83)
Q Consensus 20 ~~~g~~ir~~R~~~---gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~ 68 (83)
.++..-+..+..++ +.|..++|+.+|||.+++..+..+|...=...+..
T Consensus 15 ~IL~AA~~l~~~e~G~~~~S~~~IA~~aGvs~~tlY~yF~sK~~Ll~a~~~~ 66 (220)
T 3lsj_A 15 ALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSDMDQLGLALVAE 66 (220)
T ss_dssp HHHHHHHHHTTTSCCGGGCCHHHHHHHHTSCGGGGTTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999999875992541199999998929788888679999999999999
No 366
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=49.49 E-value=8.8 Score=18.24 Aligned_cols=45 Identities=11% Similarity=-0.008 Sum_probs=32.2
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHCC
Q ss_conf 983994999999863429999887558----999448999999999289
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELETG----KSTINIDNMIILAHTLDT 75 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~G----~~~~~~~~l~~la~al~i 75 (83)
...|+|.+++|+.+|+|.+++..+-+. -.--+-..+..++..+|+
T Consensus 46 l~~G~s~~eIA~~l~iS~~TV~~~~~~i~~KL~v~~~~elv~~a~~~Gl 94 (99)
T 1p4w_A 46 FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSM 94 (99)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTC
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
T ss_conf 9938999999777299899999999999998099999999999999689
No 367
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=48.63 E-value=9.4 Score=18.07 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=29.3
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHH----CCCCCCCHHHHHHHHHH-HCC
Q ss_conf 9839949999998634299998875----58999448999999999-289
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELE----TGKSTINIDNMIILAHT-LDT 75 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE----~G~~~~~~~~l~~la~a-l~i 75 (83)
...|+|-+|+|+.+|+|..|+..+- +--.--+-..+..+|.- +|+
T Consensus 171 l~~G~snkeIA~~L~iS~~TVk~h~~~i~~KLgv~nr~el~~~A~~~~g~ 220 (225)
T 3klo_A 171 LGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWAKNNIGI 220 (225)
T ss_dssp HTTTCCHHHHHHHTTCCHHHHHHHHHHHTTTSCCSSHHHHHHHHHHHCCC
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
T ss_conf 53399799999997889999999999999986899999999999990797
No 368
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=48.07 E-value=3.4 Score=20.71 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=30.5
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 99999998399499999986342999988755899944899
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~ 65 (83)
.+-.-+--.+.|..++|+.+|||++++.++..++...=...
T Consensus 41 ~l~~~~G~~~~T~~~IA~~aGvs~~tlY~~F~~K~~L~~~~ 81 (212)
T 2np3_A 41 VCFAERGFDATSLRRIAETAGVDQSLVHHFYGTKENLFLQA 81 (212)
T ss_dssp HHC---------------------------CCC-CHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHH
T ss_conf 99998491306799999997819755668782999999787
No 369
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=47.39 E-value=9.1 Score=18.15 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=21.6
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 983994999999863429999887
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83)
...++|..|+|+.+|++++++.++
T Consensus 20 ~~~~~tl~eia~~lglpksT~~Rl 43 (249)
T 1mkm_A 20 NPGDVSVSEIAEKFNMSVSNAYKY 43 (249)
T ss_dssp CSSCBCHHHHHHHTTCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 899989999999879199999999
No 370
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=47.26 E-value=15 Score=16.85 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=22.1
Q ss_pred HHHHHHHCCCCHHHHHHHHH-----HHHHHHHHH
Q ss_conf 99999983994999999863-----429999887
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTG-----FAQSWISEL 54 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~g-----is~~~is~i 54 (83)
.+-+....=-||+||.+.+. +++++||+-
T Consensus 26 ~~lI~~~~I~tQeeL~~~L~~~Gi~vTQATiSRD 59 (170)
T 3lap_A 26 VAILSSAQVRSQNELAALLAAEGIEVTQATLSRD 59 (170)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHH
T ss_conf 9999858978999999999975985418998988
No 371
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=46.34 E-value=2.3 Score=21.73 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3994999999863429999887
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~i 54 (83)
.|+|+.++|+.+|++.++++++
T Consensus 85 ~~lt~~eLa~~l~~s~~~vs~~ 106 (181)
T 2fbk_A 85 EGLRPTELSALAAISGPSTSNR 106 (181)
T ss_dssp SCBCHHHHHHHCSCCSGGGSSH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9909999999978787579999
No 372
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structural genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=46.12 E-value=7.4 Score=18.71 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=31.2
Q ss_pred HHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 99999999999--83994999999863429999887558999448999
Q gi|254781147|r 21 IFVNNFRNIRK--EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 (83)
Q Consensus 21 ~~g~~ir~~R~--~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l 66 (83)
++-.-+..++. -.+.|..++|+.+|||++++..+..+|...=...+
T Consensus 30 IL~AA~~lf~e~G~~~~T~~~IA~~aGvs~~tlY~~F~sKe~Ll~al~ 77 (211)
T 3fiw_A 30 VITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYWYFRTKRDLLTAMA 77 (211)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999974945375999999989288589898899899999999
No 373
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV}
Probab=46.03 E-value=8.6 Score=18.31 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=22.5
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999983994999999863429999887
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
+..+ .+...|..++++.+|+|++++|+-
T Consensus 27 l~~L-~~~~~~v~ela~~lgis~stvS~H 54 (118)
T 2jsc_A 27 LVAL-LDGVCYPGQLAAHLGLTRSNVSNH 54 (118)
T ss_dssp HHHH-HTTCCSTTTHHHHHSSCHHHHHHH
T ss_pred HHHH-HCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999-819928999999989299999999
No 374
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=45.39 E-value=13 Score=17.22 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=20.6
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 983994999999863429999887
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83)
....++-.|+++.+|++++++|+-
T Consensus 56 ~~~~~~v~ela~~l~~s~stvS~H 79 (122)
T 1r1t_A 56 ARSELCVGDLAQAIGVSESAVSHQ 79 (122)
T ss_dssp TTCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 829976999999989198889999
No 375
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulator, transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=45.12 E-value=11 Score=17.59 Aligned_cols=42 Identities=29% Similarity=0.315 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHH-HHHHHHHH----C--------CC-CCCCHHHHHHHHHHHC
Q ss_conf 399499999986342-99998875----5--------89-9944899999999928
Q gi|254781147|r 33 AKLTQKEIRNRTGFA-QSWISELE----T--------GK-STINIDNMIILAHTLD 74 (83)
Q Consensus 33 ~gltq~ela~~~gis-~~~is~iE----~--------G~-~~~~~~~l~~la~al~ 74 (83)
..+||.++|..+|+| +.++|++- + |+ ...+++.|..+|..++
T Consensus 168 ~~~t~~~lA~~lg~s~r~~vsR~L~~L~~~giI~~~~~~i~I~D~~~Lk~~a~~~~ 223 (238)
T 2bgc_A 168 DNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLD 223 (238)
T ss_dssp SCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHCHHHH
T ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHHHHCH
T ss_conf 47679999999689818899999999998897997699999888999999861050
No 376
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=44.54 E-value=17 Score=16.60 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999998--3994999999863429999887558999
Q gi|254781147|r 21 IFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKST 60 (83)
Q Consensus 21 ~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~ 60 (83)
++-.-++-+.+. .+.|..++|+.+|||++++..+..++..
T Consensus 11 Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~~F~skkd 52 (191)
T 1sgm_A 11 ILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKE 52 (191)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCHH
T ss_conf 999999999983925077999999869198899788499188
No 377
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=44.28 E-value=16 Score=16.75 Aligned_cols=26 Identities=12% Similarity=-0.027 Sum_probs=21.8
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99983994999999863429999887
Q gi|254781147|r 29 IRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 29 ~R~~~gltq~ela~~~gis~~~is~i 54 (83)
+-.+..+|..++|+.+|++++++|.-
T Consensus 26 ~L~~~~~~v~ela~~l~~s~~tvS~H 51 (118)
T 3f6o_A 26 RLSRGPATVSELAKPFDMALPSFMKH 51 (118)
T ss_dssp HHHTCCEEHHHHHTTCCSCHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99809947999999989199999999
No 378
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=44.21 E-value=9.3 Score=18.10 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.2
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 983994999999863429999887
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83)
....++..|+++.+|+|++++|+-
T Consensus 33 ~~~~~~v~ela~~l~~s~~tvS~H 56 (98)
T 3jth_A 33 HNQELSVGELCAKLQLSQSALSQH 56 (98)
T ss_dssp TTSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 729937999999988595678899
No 379
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=43.88 E-value=8.9 Score=18.22 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 994999999863429999887558
Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 34 gltq~ela~~~gis~~~is~iE~G 57 (83)
=+...|+++++|+|+++|.+..+.
T Consensus 10 llr~keV~~~~glsrstiy~~i~~ 33 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHC
T ss_conf 064999999989799999999987
No 380
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=43.50 E-value=12 Score=17.44 Aligned_cols=29 Identities=7% Similarity=0.193 Sum_probs=23.2
Q ss_pred HHHHH--HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999--983994999999863429999887
Q gi|254781147|r 26 FRNIR--KEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 26 ir~~R--~~~gltq~ela~~~gis~~~is~i 54 (83)
|.++| .-.|+++++.+++-||+++++|.-
T Consensus 50 I~AL~dylV~G~~rk~ac~r~~V~~syfS~~ 80 (111)
T 3m8j_A 50 ILAMKDYLVSGHSRKDVCEKYQMNNGYFSTT 80 (111)
T ss_dssp HHHHHHHHTTCCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHH
T ss_conf 9999999984870999999909978999999
No 381
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=42.51 E-value=12 Score=17.40 Aligned_cols=27 Identities=7% Similarity=0.032 Sum_probs=22.9
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 998399499999986342999988755
Q gi|254781147|r 30 RKEAKLTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 30 R~~~gltq~ela~~~gis~~~is~iE~ 56 (83)
....|+|-+|+|+.+++|.++|..+-+
T Consensus 40 ll~~G~s~~eIA~~L~iS~~TV~~~~~ 66 (91)
T 2rnj_A 40 LIAKGYSNQEIASASHITIKTVKTHVS 66 (91)
T ss_dssp HHHTTCCTTHHHHHHTCCHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999289999999997889999999999
No 382
>2qko_A Possible transcriptional regulator, TETR family protein; structural genomics, PSI-2, protein structure initiative; 2.35A {Rhodococcus SP}
Probab=42.50 E-value=2.1 Score=21.95 Aligned_cols=45 Identities=7% Similarity=-0.065 Sum_probs=31.4
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 999999839949999998634299998875589994489999999
Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 (83)
Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la 70 (83)
+-.-.--.+.|..++|+.+|||++++..+..++...-...+..+.
T Consensus 40 l~~~~G~~~~Ti~~IA~~Agvs~~tlY~~F~sK~~Ll~a~~~~~~ 84 (215)
T 2qko_A 40 VLAREGARGLTFRAVDVEANVPKGTASNYFPSRDDLFDQVGKRIH 84 (215)
T ss_dssp HHHHTCTTTCCHHHHHHHSSSTTTCHHHHCSCHHHHHHHHHHHGG
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999859140789999998786840698884798999999999999
No 383
>1d2z_A Death domain of pelle; six-helix bundle, linear array of death domains, plastic interfaces, apoptosis; HET: EPE; 2.00A {Drosophila melanogaster} SCOP: a.77.1.2 PDB: 1ik7_A 1ygo_A
Probab=42.09 E-value=18 Score=16.37 Aligned_cols=46 Identities=4% Similarity=0.104 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHC---CCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 499999986342999988755---8999448999999999289999960
Q gi|254781147|r 36 TQKEIRNRTGFAQSWISELET---GKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 36 tq~ela~~~gis~~~is~iE~---G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
.=..||..+|++...|..|+. ...+|+...|.....--+.++.+|+
T Consensus 33 ~Wr~LA~~Lg~~~~~I~~i~~~~~~~~sPt~~LL~~W~~~~~~Tv~~L~ 81 (108)
T 1d2z_A 33 VWQQLATAVKLYPDQVEQISSQKQRGRSASNEFLNIWGGQYNHTVQTLF 81 (108)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCBHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHH
T ss_conf 5999999959899999999873266888699999999807557099999
No 384
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=41.48 E-value=15 Score=16.83 Aligned_cols=44 Identities=14% Similarity=0.003 Sum_probs=28.4
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHC
Q ss_conf 983994999999863429999887558----99944899999999928
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELETG----KSTINIDNMIILAHTLD 74 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~G----~~~~~~~~l~~la~al~ 74 (83)
...|+|-+|.|.++|||.+++...-+. -.-.+-..+..+|-.+|
T Consensus 185 ~a~G~s~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nr~qav~~A~~~g 232 (234)
T 1l3l_A 185 IAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRK 232 (234)
T ss_dssp HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 976999999999969899999999999999868999999999999869
No 385
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP}
Probab=41.42 E-value=11 Score=17.59 Aligned_cols=24 Identities=8% Similarity=0.217 Sum_probs=21.8
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 983994999999863429999887
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83)
...++|..|+|+.+|++++++.++
T Consensus 33 ~~~~lsl~eia~~l~l~kst~~Rl 56 (265)
T 2ia2_A 33 RNQRRTLSDVARATDLTRATARRF 56 (265)
T ss_dssp SCSSEEHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 799979999999979499999999
No 386
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=40.11 E-value=19 Score=16.24 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=21.1
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99983994999999863429999887
Q gi|254781147|r 29 IRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 29 ~R~~~gltq~ela~~~gis~~~is~i 54 (83)
+-.+.-+|-.++|+.+|+|+++++.-
T Consensus 28 ~L~~~~~t~~ela~~l~~s~~~v~~H 53 (192)
T 1uly_A 28 LLRNKEMTISQLSEILGKTPQTIYHH 53 (192)
T ss_dssp HHTTCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99829967999999989198899999
No 387
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=39.53 E-value=15 Score=16.81 Aligned_cols=24 Identities=17% Similarity=0.136 Sum_probs=20.9
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 983994999999863429999887
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83)
.....+-.|+++.+|+|++++|.-
T Consensus 35 ~~~~~~v~eLa~~l~is~s~vS~H 58 (108)
T 2kko_A 35 AQGERAVEAIATATGMNLTTASAN 58 (108)
T ss_dssp TTCCEEHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 809957999999989098889999
No 388
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=38.78 E-value=4.5 Score=20.00 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=19.7
Q ss_pred HCCCCHHHHHHHH------HHHHHHHHHHH
Q ss_conf 8399499999986------34299998875
Q gi|254781147|r 32 EAKLTQKEIRNRT------GFAQSWISELE 55 (83)
Q Consensus 32 ~~gltq~ela~~~------gis~~~is~iE 55 (83)
.-+++|.+||+-. +|++++||+|-
T Consensus 28 ~~~~~Q~~la~wf~~~fg~~Is~STvs~IL 57 (144)
T 1iuf_A 28 QNRSGQQDLIEWFREKFGKDISQPSVSQIL 57 (144)
T ss_dssp SSCCCHHHHHHHHHHHHSSCCSSSSTTHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 998779999999999987998698999999
No 389
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural genomics, midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=38.66 E-value=2.7 Score=21.25 Aligned_cols=50 Identities=10% Similarity=-0.007 Sum_probs=33.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99999999983994999999863429999887558999448999999999
Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 (83)
Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~a 72 (83)
+..+-.-+--.+.|..++|+.+|||++++..+..+|..+-...+..+.+.
T Consensus 25 A~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~a~~~~~~~~ 74 (211)
T 3him_A 25 AIEVFAAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLEGHHS 74 (211)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999985935177999999979089788443499999999999988779
No 390
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=38.17 E-value=9 Score=18.18 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.0
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 983994999999863429999887
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83)
.+..+|..|+|+.+|++++++|+-
T Consensus 68 ~~g~~tv~eLa~~l~is~stvS~H 91 (151)
T 3f6v_A 68 TSGEQTVNNLAAHFPASRSAISQH 91 (151)
T ss_dssp GGCCEEHHHHHTTSSSCHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 809938999999989199999999
No 391
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=37.22 E-value=18 Score=16.35 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=28.9
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHHC
Q ss_conf 99839949999998634299998875589----9944899999999928
Q gi|254781147|r 30 RKEAKLTQKEIRNRTGFAQSWISELETGK----STINIDNMIILAHTLD 74 (83)
Q Consensus 30 R~~~gltq~ela~~~gis~~~is~iE~G~----~~~~~~~l~~la~al~ 74 (83)
....|+|-+|.|..+|||..++...-+.- .--+-..+...|-.+|
T Consensus 186 l~a~G~t~~eIA~~L~iS~~TV~~h~~~i~~KLgv~nr~qava~A~~~G 234 (236)
T 2q0o_A 186 WASKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRG 234 (236)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTT
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 9866999999999969999999999999999868999999999999868
No 392
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5
Probab=36.17 E-value=23 Score=15.81 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=19.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8399499999986342999988
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISE 53 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~ 53 (83)
..+.|..|+|+.+|+|++++|.
T Consensus 41 ~~~~~~~eLa~~lg~s~stvs~ 62 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDY 62 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHH
T ss_conf 5799799999998919989999
No 393
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=36.12 E-value=9.9 Score=17.94 Aligned_cols=34 Identities=9% Similarity=0.251 Sum_probs=23.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 8399499999986342999988755899944899
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~ 65 (83)
...+|.+++|+.+|+|..+++++-+.....++..
T Consensus 17 ~~~~~l~~la~~~~~s~~~~~r~f~~~~g~~~~~ 50 (292)
T 1d5y_A 17 DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGA 50 (292)
T ss_dssp SSSCCCHHHHTTTSSCHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHH
T ss_conf 8999999999998939999999999998909999
No 394
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=35.74 E-value=21 Score=16.01 Aligned_cols=23 Identities=39% Similarity=0.368 Sum_probs=11.1
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 83994999999863429999887
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~i 54 (83)
..+.||.++|+.+|+|..+|.+.
T Consensus 157 ~~~~t~~~Ia~~~~vs~~TI~~~ 179 (207)
T 1c9b_A 157 AEKRTQKEIGDIAGVADVTIRQS 179 (207)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 89999999999979889999999
No 395
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic acid, lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=34.99 E-value=15 Score=16.82 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 94999999863429999887558
Q gi|254781147|r 35 LTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 35 ltq~ela~~~gis~~~is~iE~G 57 (83)
+|..|+|+.+||+.-++.+|++.
T Consensus 79 Yt~rEvAe~tGV~~e~~rr~wRa 101 (222)
T 2ev1_A 79 VSAREISENYGVDLELLQRVQRA 101 (222)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHH
T ss_pred ECHHHHHHHHCCCHHHHHHHHHH
T ss_conf 86999999979199999999998
No 396
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=34.41 E-value=24 Score=15.64 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=20.5
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 983994999999863429999887
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83)
...-+|-.++|+.+|+|++++++-
T Consensus 25 ~~~~~~~~ela~~l~is~~~v~~H 48 (202)
T 2p4w_A 25 TKRPYFVSELSRELGVGQKAVLEH 48 (202)
T ss_dssp HHSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 739998999999989099899999
No 397
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=34.29 E-value=21 Score=15.95 Aligned_cols=46 Identities=15% Similarity=0.037 Sum_probs=23.0
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHC------C--CCC---CCHHHHHHHHHHHCCCH
Q ss_conf 8399499999986342999988755------8--999---44899999999928999
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELET------G--KST---INIDNMIILAHTLDTPL 77 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~------G--~~~---~~~~~l~~la~al~i~~ 77 (83)
....|..|+|+..+++...+++..+ + ... -+-+-+.++|..|+++-
T Consensus 67 ~~prtl~eia~~~~~~~k~i~~~~k~i~~~l~~~~~~~~~~~~~~i~rf~~~l~l~~ 123 (200)
T 1ais_B 67 KVPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE 123 (200)
T ss_dssp TCCCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCH
T ss_conf 899679999999840299999999999999632356688998999999985627989
No 398
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=33.70 E-value=25 Score=15.57 Aligned_cols=44 Identities=16% Similarity=0.020 Sum_probs=29.7
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHC
Q ss_conf 983994999999863429999887558----99944899999999928
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELETG----KSTINIDNMIILAHTLD 74 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~G----~~~~~~~~l~~la~al~ 74 (83)
...|+|-+|.|+.+++|.+++...-.. -.--+...+..+|..+|
T Consensus 209 ~~~G~~~~eia~~l~is~~tv~~h~~~~~~kl~~~~~~~~~~~a~~~~ 256 (258)
T 3clo_A 209 IRKGLSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACRAAELMK 256 (258)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 985999999998949999999999999999858999999999999859
No 399
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, transcription regulation, redox poise, DNA-binding, NAD, NADH; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=33.67 E-value=25 Score=15.57 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=39.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH-----HCCCCC--CCHHH-HHHHH
Q ss_conf 96988888868989999999999999999998--3994999999863429999887-----558999--44899-99999
Q gi|254781147|r 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISEL-----ETGKST--INIDN-MIILA 70 (83)
Q Consensus 1 Mp~~~~~~p~~~~~~~~~~~~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~i-----E~G~~~--~~~~~-l~~la 70 (83)
|.+++.+-|. +..+.-...-+.|+.+..+ ...|-.+||+.+|++.+.|.+= +-|++. -+++. +..|.
T Consensus 1 M~~~~~~Ip~---~ti~RLp~Y~r~L~~l~~~g~~~iSS~~La~~~gi~~~qvRkDls~fG~~G~~g~GY~V~~L~~~i~ 77 (215)
T 2vt3_A 1 MNKDQSKIPQ---ATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGALGKKGYGYNVDYLLSFFR 77 (215)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHCCCHHHHHHHHHHTTCCC-----EEHHHHHHHHH
T ss_pred CCCCCCCCCH---HHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHH
T ss_conf 9964466898---9999999999999999986994897999999969899999999999742499888716899999999
Q ss_pred HHHCCC
Q ss_conf 992899
Q gi|254781147|r 71 HTLDTP 76 (83)
Q Consensus 71 ~al~i~ 76 (83)
+.||..
T Consensus 78 ~iLG~~ 83 (215)
T 2vt3_A 78 KTLDQD 83 (215)
T ss_dssp HHHHHC
T ss_pred HHHCCC
T ss_conf 996899
No 400
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=33.42 E-value=12 Score=17.45 Aligned_cols=22 Identities=14% Similarity=0.065 Sum_probs=11.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3994999999863429999887
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~i 54 (83)
.|=|...+|.+-|++...|.++
T Consensus 9 ~GDTl~~IA~~y~vs~~~i~~~ 30 (48)
T 1e0g_A 9 KGDSLSSIAKRHGVNIKDVMRW 30 (48)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999999999989689999986
No 401
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1}
Probab=33.16 E-value=20 Score=16.12 Aligned_cols=19 Identities=5% Similarity=0.081 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 4999999863429999887
Q gi|254781147|r 36 TQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 36 tq~ela~~~gis~~~is~i 54 (83)
|..+||+..|||++++.+.
T Consensus 37 ser~La~~~~vSr~tVr~A 55 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKA 55 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHH
T ss_conf 4999999979898999999
No 402
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc binding transcription factor; 2.40A {Rhodobacter sphaeroides 2} PDB: 2z2s_A
Probab=33.11 E-value=4.2 Score=20.17 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=24.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999983994999999863429999887
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
..|-.++.-.|+|.+|+|+.+|+|..++...
T Consensus 141 r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~ 171 (184)
T 2q1z_A 141 RALIERAFFGDLTHRELAAETGLPLGTIKSR 171 (184)
T ss_dssp HHHHHHHHHSCCSSCCSTTTCCCCCHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999999992999999999989399999999
No 403
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=32.74 E-value=15 Score=16.85 Aligned_cols=22 Identities=5% Similarity=-0.079 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3994999999863429999887
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~i 54 (83)
.++|+.++|+.+|++.++++++
T Consensus 173 ~~~~~~~la~~l~~~~~~vs~~ 194 (250)
T 1p4x_A 173 NIVLLKDLIETIHHKYPQTVRA 194 (250)
T ss_dssp CCEEHHHHHHHSSSCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9676999999978885069999
No 404
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=32.67 E-value=19 Score=16.23 Aligned_cols=22 Identities=5% Similarity=0.021 Sum_probs=18.4
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 399-4999999863429999887
Q gi|254781147|r 33 AKL-TQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 33 ~gl-tq~ela~~~gis~~~is~i 54 (83)
..+ |..+||+..|||++++.+-
T Consensus 26 ~~LPse~~La~~~gVSr~tVR~A 48 (129)
T 2ek5_A 26 QRVPSTNELAAFHRINPATARNG 48 (129)
T ss_dssp SCBCCHHHHHHHTTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99878999998929999999999
No 405
>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis}
Probab=30.84 E-value=28 Score=15.28 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.8
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 983994999999863429999887
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83)
...|+|-+++|+.+++|..|+..+
T Consensus 161 l~~G~snkeIA~~L~iS~~TVk~h 184 (225)
T 3c3w_A 161 LSEGLTNKQIADRMFLAEKTVKNY 184 (225)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHCCCHHHHHHHHCCCHHHHHHH
T ss_conf 993898889999978879999999
No 406
>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A
Probab=30.36 E-value=28 Score=15.23 Aligned_cols=33 Identities=9% Similarity=0.234 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999983994999999863429999887
Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83)
+-..|+.+....++|-.++|+.+|++...|.+.
T Consensus 15 Il~~L~~~g~g~~~tA~~LAk~lg~~Kk~vN~~ 47 (81)
T 1qbj_A 15 ILKFLEELGEGKATTAHDLSGKLGTPKKEINRV 47 (81)
T ss_dssp HHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 999999737997521999999969888898999
No 407
>1xd7_A YWNA; structural genomics, protein structure initiative, winged helix DNA binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=29.42 E-value=29 Score=15.14 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=21.4
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 983994999999863429999887
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83)
.+..+|-+++|+..|++++++.+|
T Consensus 20 ~~~~~ss~~IAe~~~i~~~~l~kI 43 (145)
T 1xd7_A 20 MDEKTSSEIIADSVNTNPVVVRRM 43 (145)
T ss_dssp TCSCCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 499989999998889199999999
No 408
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=28.92 E-value=20 Score=16.16 Aligned_cols=25 Identities=16% Similarity=0.136 Sum_probs=21.3
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8399499999986342999988755
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~ 56 (83)
.--||.+|.|+-.||+++++.++=+
T Consensus 14 K~~LTi~EAa~Y~gIg~~klr~L~~ 38 (70)
T 1y6u_A 14 RYTLTIEEASKYFRIGENKLRRLAE 38 (70)
T ss_dssp SSEEEHHHHHHHTCSCHHHHHHHHH
T ss_pred HHHCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 1003899999996927999999998
No 409
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=28.30 E-value=21 Score=15.98 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q ss_conf 94999999863429999887
Q gi|254781147|r 35 LTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 35 ltq~ela~~~gis~~~is~i 54 (83)
.|.+.+|+.+|+|.+++.++
T Consensus 52 PS~~~La~~~g~s~~~v~~~ 71 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEM 71 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHH
T ss_conf 99999998959499999999
No 410
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, PSI, protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=28.01 E-value=31 Score=14.99 Aligned_cols=44 Identities=9% Similarity=0.123 Sum_probs=30.5
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHH-----C-------C------CCCCCHHHHHHHHHHHCC
Q ss_conf 839949999998634299998875-----5-------8------999448999999999289
Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELE-----T-------G------KSTINIDNMIILAHTLDT 75 (83)
Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE-----~-------G------~~~~~~~~l~~la~al~i 75 (83)
..-+|-+++|+..|+++.++.++- + | ...|.--+|..+-++++.
T Consensus 28 ~~~~s~~~ia~~~~i~~~~l~kil~~L~kaGlv~s~rG~GGy~L~r~p~~ItL~dI~~ai~~ 89 (149)
T 1ylf_A 28 SSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDLHEITLLDVYHAVNV 89 (149)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CCEEESSCGGGCBHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCEECCCHHHCCHHHHHHHHHC
T ss_conf 98666999998789099999999999998898673169998530488755589999999815
No 411
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=27.34 E-value=29 Score=15.14 Aligned_cols=23 Identities=9% Similarity=0.356 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 39949999998634299998875
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELE 55 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~iE 55 (83)
.-+|-+++|+..|++++++.+|-
T Consensus 43 ~~vs~~eIAe~~~ip~~~L~kIl 65 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSEHYLEQLI 65 (159)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHH
T ss_pred CEECHHHHHHHHCCCHHHHHHHH
T ss_conf 81959999987890999999999
No 412
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=27.18 E-value=32 Score=14.90 Aligned_cols=23 Identities=13% Similarity=0.328 Sum_probs=19.2
Q ss_pred HCCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 8399-4999999863429999887
Q gi|254781147|r 32 EAKL-TQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 32 ~~gl-tq~ela~~~gis~~~is~i 54 (83)
-..+ |..+||+..|||+.++.+-
T Consensus 31 G~~LPse~~La~~~~VSr~TVR~A 54 (243)
T 2wv0_A 31 DMPLPSEREYAEQFGISRMTVRQA 54 (243)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 399937999999979699999999
No 413
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=26.85 E-value=32 Score=14.92 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=16.5
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 399-4999999863429999887
Q gi|254781147|r 33 AKL-TQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 33 ~gl-tq~ela~~~gis~~~is~i 54 (83)
..+ |..+||+..|||++++...
T Consensus 29 ~~LPse~eLa~~~gVSr~tVReA 51 (239)
T 1hw1_A 29 TILPAERELSELIGVTRTTLREV 51 (239)
T ss_dssp SBCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99915999999989299999999
No 414
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=26.61 E-value=30 Score=15.05 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.0
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 399-4999999863429999887
Q gi|254781147|r 33 AKL-TQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 33 ~gl-tq~ela~~~gis~~~is~i 54 (83)
-.+ |..+||+..|||+.++.+.
T Consensus 51 ~rLPsereLA~~~gVSR~TVR~A 73 (272)
T 3eet_A 51 TRLPSQARIREEYGVSDTVALEA 73 (272)
T ss_dssp SBCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99908999999989499999999
No 415
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=26.60 E-value=30 Score=15.05 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=19.1
Q ss_pred HCCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 8399-4999999863429999887
Q gi|254781147|r 32 EAKL-TQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 32 ~~gl-tq~ela~~~gis~~~is~i 54 (83)
...+ |..+||+..|||+.++.+-
T Consensus 34 G~~LPser~La~~~~VSr~tVr~A 57 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVSRA 57 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 699954999999939288999999
No 416
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, P partition, DNA binding protein; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=26.08 E-value=19 Score=16.27 Aligned_cols=57 Identities=12% Similarity=0.214 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHH----H----------CCC---CCCCHHHHHHHHHHHCCC
Q ss_conf 999999999998-------3994999999863429999887----5----------589---994489999999992899
Q gi|254781147|r 21 IFVNNFRNIRKE-------AKLTQKEIRNRTGFAQSWISEL----E----------TGK---STINIDNMIILAHTLDTP 76 (83)
Q Consensus 21 ~~g~~ir~~R~~-------~gltq~ela~~~gis~~~is~i----E----------~G~---~~~~~~~l~~la~al~i~ 76 (83)
.+.+.|+..|.+ +-+|..++|+.+|++++++... | +|. ...+++.+..+.+.++++
T Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~tl~~i~~~~~~~~~~ 99 (398)
T 3ez2_A 20 VLTEQVQLQKDELHANEFYQVYAKAALAKLPLLTRANVDYAVSEMEEKGYVFDKRPAGSSMKYAMSIQNIIDIYEHRGVP 99 (398)
T ss_dssp HHHHHHTTTC------CCCCCBCGGGGGGSTTCCHHHHHHHHHHHHHHTCCCCEEECSSSEEECBCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCC
T ss_conf 99999984332457531356777999997559888899999985430588876567886642465599999999972689
Q ss_pred H
Q ss_conf 9
Q gi|254781147|r 77 L 77 (83)
Q Consensus 77 ~ 77 (83)
.
T Consensus 100 ~ 100 (398)
T 3ez2_A 100 K 100 (398)
T ss_dssp C
T ss_pred C
T ss_conf 8
No 417
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=25.48 E-value=30 Score=15.10 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.0
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 399-4999999863429999887
Q gi|254781147|r 33 AKL-TQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 33 ~gl-tq~ela~~~gis~~~is~i 54 (83)
..+ |..+||+..|||++++.+-
T Consensus 33 ~~LPser~La~~~~vSr~tvr~A 55 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRA 55 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99837999999979877999999
No 418
>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=25.43 E-value=20 Score=16.09 Aligned_cols=20 Identities=5% Similarity=0.038 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q ss_conf 94999999863429999887
Q gi|254781147|r 35 LTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 35 ltq~ela~~~gis~~~is~i 54 (83)
-|.+.+|+.+|+|.+++.++
T Consensus 52 PS~~~La~~~g~s~~~v~~~ 71 (135)
T 2v79_A 52 PTPNQLQEGMSISVEECTNR 71 (135)
T ss_dssp CCHHHHHTTSSSCHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHH
T ss_conf 89999998959499999999
No 419
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482}
Probab=25.32 E-value=35 Score=14.70 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 39949999998634299998875
Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELE 55 (83)
Q Consensus 33 ~gltq~ela~~~gis~~~is~iE 55 (83)
.++|.+|||+++|++...+.++-
T Consensus 49 ~~~t~~eLa~~~g~~~~~l~rlL 71 (363)
T 3dp7_A 49 EGYTLQEISGRTGLTRYAAQVLL 71 (363)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99899999988790999999999
No 420
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=24.19 E-value=37 Score=14.57 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=21.7
Q ss_pred HHHHHHH-CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998-3994999999863429999887
Q gi|254781147|r 26 FRNIRKE-AKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 26 ir~~R~~-~gltq~ela~~~gis~~~is~i 54 (83)
++.+... ..++.+++|+.+|+....+.++
T Consensus 24 ~~~L~~~~~~l~ee~la~~~~i~~k~vR~i 53 (110)
T 1q1h_A 24 LRILLDKGTEMTDEEIANQLNIKVNDVRKK 53 (110)
T ss_dssp HHHHHHHCSCBCHHHHHHTTTSCHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999998588778999998949999999999
No 421
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli}
Probab=23.39 E-value=3.2 Score=20.89 Aligned_cols=29 Identities=17% Similarity=0.408 Sum_probs=24.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999839949999998634299998
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWIS 52 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is 52 (83)
+-|+.+.+.-..|..++|+.+|+|.+++.
T Consensus 17 ~Il~~L~~d~R~s~~~IA~~lg~S~~tV~ 45 (163)
T 2gqq_A 17 NILNELQKDGRISNVELSKRVGLSPTPCL 45 (163)
T ss_dssp HHHHHHHHCSSCCTTGGGTSSSCCTTTSS
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999998589999999999890999999
No 422
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.17 E-value=23 Score=15.72 Aligned_cols=26 Identities=15% Similarity=0.056 Sum_probs=16.9
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98399499999986342999988755
Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~ 56 (83)
.+.|=|...+|++-|++...|.++-+
T Consensus 20 V~~GDTL~~IA~~y~v~~~~i~~~N~ 45 (77)
T 2djp_A 20 LEPGDTLAGLALKYGVTMEQIKRANR 45 (77)
T ss_dssp CCTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999999998889999998759
No 423
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=22.73 E-value=15 Score=16.94 Aligned_cols=36 Identities=11% Similarity=0.017 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 8634299998875589994489999999992899999
Q gi|254781147|r 43 RTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 (83)
Q Consensus 43 ~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~ 79 (83)
-.+.+.+.|++||+|... +...+...+-.++++...
T Consensus 10 ~~~~s~~~is~ie~g~~~-~~~~~~~~~~~~~v~~~~ 45 (166)
T 2vpv_A 10 PEDPNEDIIERIESGGIE-NGEWLKHGILEANVKISD 45 (166)
T ss_dssp -------------------------------------
T ss_pred CCCCCHHHHHHHHCCCCC-CHHHHHHHHCCCCCCCCC
T ss_conf 278897685797769989-506623101014401200
No 424
>2dbf_A Nuclear factor NF-kappa-B P105 subunit; apoptosis, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.26 E-value=40 Score=14.34 Aligned_cols=45 Identities=7% Similarity=0.011 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 994999999863429999887558999448999999999289999960
Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 34 gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
|-.=..||..+|++. .|..++.+. +|+...|..+. .-+.++.+|+
T Consensus 30 g~dWr~LA~~Lg~~~-~i~~~~~~~-sPt~~LL~~w~-~~~~tv~~L~ 74 (100)
T 2dbf_A 30 DKNWATLAQKLGLGI-LNNAFRLSP-APSKTLMDNYE-VSGGTVRELV 74 (100)
T ss_dssp TSSHHHHHHHHTCGG-GHHHHHHSS-CHHHHHHHHHH-HTCCCHHHHH
T ss_pred CCCHHHHHHHCCCHH-HHHHHHCCC-CHHHHHHHHHH-CCCCCHHHHH
T ss_conf 988999999929889-999997289-87999999998-0899799999
No 425
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=22.06 E-value=40 Score=14.31 Aligned_cols=20 Identities=15% Similarity=-0.002 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q ss_conf 94999999863429999887
Q gi|254781147|r 35 LTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 35 ltq~ela~~~gis~~~is~i 54 (83)
-|....|+.+|+|++++|+-
T Consensus 16 ~s~~~AA~~L~~sq~avS~~ 35 (294)
T 1ixc_A 16 GNMAAAAKRLHVSQPPITRQ 35 (294)
T ss_dssp SSHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHH
T ss_conf 99999999988888999999
No 426
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=20.81 E-value=17 Score=16.57 Aligned_cols=27 Identities=7% Similarity=-0.027 Sum_probs=20.5
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 998399499999986342999988755
Q gi|254781147|r 30 RKEAKLTQKEIRNRTGFAQSWISELET 56 (83)
Q Consensus 30 R~~~gltq~ela~~~gis~~~is~iE~ 56 (83)
....+.||+++|+.+|||..+|.+.-+
T Consensus 288 ~~~~~~t~~~Ia~~~~vs~~TI~~~yk 314 (345)
T 3k7a_M 288 LFQIPITAAKVGQTLQVTEGTIKSGYK 314 (345)
T ss_dssp ---------------------------
T ss_pred HHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 968798999999885987999999999
No 427
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=20.47 E-value=44 Score=14.11 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=16.3
Q ss_pred CC-CHHHHHHHHHHHHHHHHH
Q ss_conf 99-499999986342999988
Q gi|254781147|r 34 KL-TQKEIRNRTGFAQSWISE 53 (83)
Q Consensus 34 gl-tq~ela~~~gis~~~is~ 53 (83)
.+ |..+||+..|||++.|..
T Consensus 27 ~LpsE~eLa~~~gVSRt~VRE 47 (239)
T 2di3_A 27 HLPSERALSETLGVSRSSLRE 47 (239)
T ss_dssp BCCCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHH
T ss_conf 990199999998919899999
No 428
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=20.18 E-value=44 Score=14.08 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998------3994999999863429999887
Q gi|254781147|r 19 RMIFVNNFRNIRKE------AKLTQKEIRNRTGFAQSWISEL 54 (83)
Q Consensus 19 ~~~~g~~ir~~R~~------~gltq~ela~~~gis~~~is~i 54 (83)
++.+...|+..=.. ..++..+||+..|||++.|...
T Consensus 28 ~~~v~~~lr~~I~~g~l~pG~~L~e~~La~~~gvSRtpVREA 69 (237)
T 3c7j_A 28 RTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREA 69 (237)
T ss_dssp HHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999999999819999909749999999889586999999
Done!