HHSEARCH alignment of GI: 254781147 and SCOP domain: d1nera_

Alignment
>d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]}
Probab=95.28  E-value=0.023  Score=32.16  Aligned_cols=56  Identities=16%  Similarity=0.119  Sum_probs=45.4

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf             99999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r   24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK   82 (83)
Q Consensus        24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~   82 (83)
                      ..|+..-..+|+|..+|+...|++.+++...-.   .|....=..||++||+++.+++.
T Consensus        12 adI~AaL~krG~sLa~lsr~~gls~stl~naL~---rp~pKgEriIA~aLg~~P~eIWP   67 (74)
T d1nera_          12 ADVIAGLKKRKLSLSALSRQFGYAPTTLANALE---RHWPKGEQIIANALETKPEVIWP   67 (74)
T ss_dssp             HHHHHHHTTSSCCHHHHHHHHSCCHHHHHHTTT---SSCHHHHHHHHHHTTSCHHHHST
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC---CCCHHHHHHHHHHHCCCHHHHCC
T ss_conf             999999999688799999990998789999983---77858999999997859889594


SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Phage repressors
domain: Ner
species: Bacteriophage mu [TaxId: 10677]