HHSEARCH alignment of GI: 254781147 and SCOP domain: d1r71a_

Alignment

Probab=91.62  E-value=0.12  Score=27.88  Aligned_cols=34  Identities=12%  Similarity=0.139  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999998399499999986342999988755
Q gi|254781147|r   22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET   56 (83)
Q Consensus        22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~   56 (83)
                      .+.-++.+. ..|+|++++|+++|.|.++|+++-.
T Consensus        19 ~A~a~~~l~-~~g~s~~eiA~~~G~s~~~V~~~l~   52 (114)
T d1r71a_          19 IADFIGREL-AKGKKKGDIAKEIGKSPAFITQHVT   52 (114)
T ss_dssp             HHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred             HHHHHHHHH-HHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999998-8099899999997772999999999

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: KorB DNA-binding domain-like
family: KorB DNA-binding domain-like
domain: Transcriptional repressor protein KorB DNA-binding domain
species: Escherichia coli [TaxId: 562]