Query gi|254781147|ref|YP_003065560.1| transcriptional regulator [Candidatus Liberibacter asiaticus str. psy62] Match_columns 83 No_of_seqs 109 out of 8897 Neff 7.1 Searched_HMMs 13730 Date Wed Jun 1 11:45:11 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781147.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1y7ya1 a.35.1.3 (A:5-73) Rest 99.6 4.2E-15 3.1E-19 107.8 8.0 64 18-81 6-69 (69) 2 d2b5aa1 a.35.1.3 (A:1-77) Regu 99.6 8.1E-15 5.9E-19 106.1 9.3 66 17-82 6-71 (77) 3 d1y9qa1 a.35.1.8 (A:4-82) Prob 99.5 1.1E-14 7.7E-19 105.4 8.2 66 18-83 5-70 (79) 4 d1b0na2 a.35.1.3 (A:1-68) SinR 99.5 1.6E-14 1.1E-18 104.4 7.7 62 22-83 2-64 (68) 5 d1lmb3_ a.35.1.2 (3:) lambda C 99.5 2.4E-14 1.8E-18 103.2 8.5 72 11-82 2-73 (87) 6 d2ofya1 a.35.1.3 (A:3-84) Puta 99.5 5.7E-14 4.1E-18 101.1 9.9 70 11-82 4-74 (82) 7 d1utxa_ a.35.1.3 (A:) Putative 99.5 5.8E-15 4.2E-19 106.9 4.2 62 22-83 2-63 (66) 8 d2r1jl1 a.35.1.2 (L:3-68) P22 99.5 6.2E-14 4.5E-18 100.8 7.9 62 21-82 3-64 (66) 9 d2o38a1 a.35.1.13 (A:28-116) H 99.5 2.3E-14 1.7E-18 103.4 4.7 69 14-82 4-73 (89) 10 d1x57a1 a.35.1.12 (A:8-85) End 99.4 7.9E-14 5.8E-18 100.2 5.8 61 20-80 5-65 (78) 11 d1r69a_ a.35.1.2 (A:) 434 C1 r 99.4 1.8E-13 1.3E-17 98.0 6.5 60 22-82 2-61 (63) 12 d2croa_ a.35.1.2 (A:) cro 434 99.4 2.5E-13 1.8E-17 97.3 7.0 61 21-82 3-63 (65) 13 d2a6ca1 a.35.1.13 (A:1-69) HTH 99.4 2.2E-13 1.6E-17 97.6 5.9 66 16-81 1-67 (69) 14 d2icta1 a.35.1.3 (A:8-94) Anti 99.3 9.9E-13 7.2E-17 93.7 7.4 59 23-81 3-61 (87) 15 d2ppxa1 a.35.1.3 (A:30-91) Unc 99.0 5.6E-10 4.1E-14 77.4 6.2 56 25-81 3-58 (62) 16 d2auwa1 a.35.1.10 (A:88-154) H 98.6 1.7E-08 1.2E-12 68.6 5.2 44 23-66 3-46 (67) 17 d2bnma1 a.35.1.3 (A:6-76) Hydr 97.6 0.00012 8.8E-09 45.7 7.1 64 20-83 4-68 (71) 18 d1e3oc2 a.35.1.1 (C:1-75) Oct- 97.4 0.00046 3.3E-08 42.3 7.9 56 17-74 7-68 (75) 19 d1au7a2 a.35.1.1 (A:5-76) Pit- 97.3 0.00055 4E-08 41.8 8.0 57 16-74 2-64 (72) 20 d1dwka1 a.35.1.4 (A:1-86) Cyan 97.2 0.00079 5.7E-08 40.9 7.5 63 18-80 10-72 (86) 21 d1efaa1 a.35.1.5 (A:2-60) Lac 96.4 0.0017 1.2E-07 38.9 4.1 44 33-76 1-47 (59) 22 d2hsga1 a.35.1.5 (A:2-58) Gluc 96.3 0.0027 2E-07 37.6 5.1 43 34-76 1-46 (57) 23 d1ic8a2 a.35.1.1 (A:87-180) He 96.0 0.0069 5.1E-07 35.2 5.7 46 19-64 26-71 (94) 24 d1qpza1 a.35.1.5 (A:2-58) Puri 96.0 0.0044 3.2E-07 36.4 4.7 42 36-77 2-46 (57) 25 d2awia1 a.35.1.11 (A:2-66) Prg 95.9 0.016 1.2E-06 33.1 7.2 59 22-81 3-61 (65) 26 d1nera_ a.35.1.2 (A:) Ner {Bac 95.3 0.023 1.7E-06 32.2 6.2 56 24-82 12-67 (74) 27 d1uxda_ a.35.1.5 (A:) Fructose 94.9 0.0046 3.4E-07 36.3 1.8 43 35-77 1-49 (59) 28 d1jhga_ a.4.12.1 (A:) Trp repr 93.5 0.061 4.5E-06 29.6 5.1 41 17-57 39-81 (101) 29 d1vz0a1 a.4.14.1 (A:116-208) P 93.2 0.051 3.7E-06 30.1 4.2 31 23-54 9-39 (93) 30 d2ox6a1 a.35.1.6 (A:5-166) Hyp 92.7 0.22 1.6E-05 26.3 6.9 48 23-70 5-52 (162) 31 d1r71a_ a.4.14.1 (A:) Transcri 91.6 0.12 8.8E-06 27.9 4.6 34 22-56 19-52 (114) 32 d2jn6a1 a.4.1.19 (A:1-89) Unch 91.2 0.11 8.2E-06 28.1 4.0 27 29-55 18-44 (89) 33 d1s4ka_ a.35.1.6 (A:) Putative 90.0 0.35 2.6E-05 25.1 5.7 49 23-71 5-55 (120) 34 d1ijwc_ a.4.1.2 (C:) HIN recom 89.7 0.15 1.1E-05 27.4 3.6 31 26-57 14-44 (47) 35 d1z05a1 a.4.5.63 (A:10-80) Tra 89.2 0.22 1.6E-05 26.3 4.1 33 22-54 8-40 (71) 36 d2csfa1 a.35.1.7 (A:8-95) DNA- 89.0 0.59 4.3E-05 23.8 6.2 60 20-79 13-79 (88) 37 d1nr3a_ d.236.1.1 (A:) DNA-bin 87.6 0.0076 5.5E-07 35.0 -4.2 26 32-57 3-28 (122) 38 d1z6ra1 a.4.5.63 (A:12-81) Mlc 87.4 0.21 1.5E-05 26.5 3.1 32 23-54 8-39 (70) 39 d1rp3a2 a.4.13.2 (A:164-234) S 87.1 0.31 2.3E-05 25.5 3.8 33 24-56 27-59 (71) 40 d1k78a1 a.4.1.5 (A:19-81) Pax- 86.9 0.63 4.6E-05 23.6 5.3 39 22-61 19-62 (63) 41 d1hlva1 a.4.1.7 (A:1-66) DNA-b 86.5 0.32 2.4E-05 25.3 3.7 33 26-58 17-49 (66) 42 d1x2la1 a.35.1.7 (A:9-95) Home 86.1 0.55 4E-05 24.0 4.7 57 20-76 12-75 (87) 43 d1s7oa_ a.4.13.3 (A:) Hypothet 85.6 0.47 3.4E-05 24.4 4.1 33 24-56 22-54 (106) 44 d2o4aa1 a.35.1.7 (A:370-452) D 85.5 0.97 7.1E-05 22.5 5.7 59 21-79 5-70 (83) 45 d2o7ta1 a.4.1.9 (A:1-78) Trans 84.7 0.84 6.1E-05 22.9 5.1 52 20-71 11-64 (78) 46 d1ku3a_ a.4.13.2 (A:) Sigma70 84.6 0.46 3.4E-05 24.4 3.7 26 32-57 26-51 (61) 47 d2hoea1 a.4.5.63 (A:10-71) N-a 84.4 0.43 3.2E-05 24.6 3.5 29 25-54 4-32 (62) 48 d1i5za1 a.4.5.4 (A:138-206) Ca 82.6 0.37 2.7E-05 25.0 2.5 22 34-55 29-50 (69) 49 d1wh8a_ a.35.1.7 (A:) Homeobox 82.4 0.98 7.2E-05 22.5 4.6 58 19-76 29-93 (111) 50 d3e5ua1 a.4.5.4 (A:148-227) Ch 82.4 0.41 3E-05 24.8 2.7 22 33-54 29-50 (80) 51 d2d1ha1 a.4.5.50 (A:1-109) Hyp 82.0 0.55 4E-05 24.0 3.2 30 25-54 26-56 (109) 52 d1j5ya1 a.4.5.1 (A:3-67) Putat 81.9 1.1 7.9E-05 22.2 4.7 34 21-54 8-42 (65) 53 d2o3fa1 a.4.1.20 (A:1-83) Puta 81.7 0.93 6.8E-05 22.6 4.3 44 22-65 23-67 (83) 54 d2bgca1 a.4.5.4 (A:138-237) Li 81.5 0.43 3.1E-05 24.6 2.5 41 34-74 31-85 (100) 55 d1ft9a1 a.4.5.4 (A:134-213) CO 81.3 0.45 3.3E-05 24.5 2.6 22 33-54 29-50 (80) 56 d1wh6a_ a.35.1.7 (A:) Homeobox 81.2 1 7.3E-05 22.4 4.3 40 19-58 19-59 (101) 57 d1zyba1 a.4.5.4 (A:148-220) Pr 81.0 0.46 3.4E-05 24.4 2.6 22 33-54 26-47 (73) 58 d1s7ea2 a.35.1.7 (A:6-85) Hepa 80.9 0.55 4E-05 24.0 2.9 57 20-76 5-67 (80) 59 d2gaua1 a.4.5.4 (A:152-232) Tr 80.7 0.44 3.2E-05 24.5 2.4 39 33-71 28-79 (81) 60 d1xsva_ a.4.13.3 (A:) Hypothet 80.5 0.81 5.9E-05 23.0 3.7 31 25-55 25-55 (106) 61 d1umqa_ a.4.1.12 (A:) Photosyn 80.1 0.72 5.2E-05 23.3 3.3 32 23-54 22-53 (60) 62 d2a61a1 a.4.5.28 (A:5-143) Tra 79.4 0.93 6.7E-05 22.6 3.7 32 23-54 33-64 (139) 63 d2fbqa1 a.4.1.9 (A:2-80) Trans 79.3 0.35 2.5E-05 25.2 1.5 55 23-77 13-67 (79) 64 d1or7a1 a.4.13.2 (A:120-187) S 79.1 1 7.5E-05 22.4 3.8 31 24-54 24-54 (68) 65 d1biaa1 a.4.5.1 (A:1-63) Bioti 79.0 0.55 4E-05 24.0 2.4 31 24-54 9-39 (63) 66 d1etxa_ a.4.1.12 (A:) FIS prot 78.9 1.2 8.7E-05 22.0 4.1 32 23-54 51-82 (89) 67 d1gdta1 a.4.1.2 (A:141-183) ga 78.9 1.2 8.6E-05 22.0 4.1 33 24-57 9-41 (43) 68 d1v7ba1 a.4.1.9 (A:1-74) Trans 78.8 0.34 2.5E-05 25.2 1.3 54 23-76 13-66 (74) 69 d2g7sa1 a.4.1.9 (A:3-76) Putat 78.6 0.44 3.2E-05 24.6 1.8 53 23-75 13-65 (74) 70 d2id6a1 a.4.1.9 (A:1-75) Trans 78.5 0.46 3.3E-05 24.5 1.9 58 23-80 12-69 (75) 71 d1pb6a1 a.4.1.9 (A:14-85) Hypo 78.4 1.4 0.0001 21.6 4.3 54 20-73 8-63 (72) 72 d1z0xa1 a.4.1.9 (A:4-71) Trans 78.2 0.37 2.7E-05 25.0 1.3 56 21-76 7-65 (68) 73 d2gfna1 a.4.1.9 (A:4-80) Proba 78.1 0.36 2.7E-05 25.0 1.3 47 32-78 24-70 (77) 74 d2p7vb1 a.4.13.2 (B:546-613) S 77.9 0.87 6.3E-05 22.8 3.2 26 32-57 23-48 (68) 75 d1sfxa_ a.4.5.50 (A:) Hypothet 77.5 1.4 0.00011 21.5 4.2 32 23-54 23-54 (109) 76 d1vi0a1 a.4.1.9 (A:6-77) Hypot 77.3 1.3 9.6E-05 21.7 4.0 49 26-74 13-61 (72) 77 d2zcwa1 a.4.5.4 (A:118-199) Tr 77.1 0.71 5.2E-05 23.3 2.5 40 33-72 28-80 (82) 78 d2cfxa1 a.4.5.32 (A:1-63) Tran 76.9 1 7.4E-05 22.4 3.3 30 24-53 9-38 (63) 79 d1q06a_ a.6.1.3 (A:) Transcrip 76.4 0.72 5.2E-05 23.3 2.4 46 35-80 1-63 (127) 80 d2etha1 a.4.5.28 (A:1-140) Put 76.3 1.2 8.9E-05 21.9 3.5 30 25-54 37-66 (140) 81 d2g7ga1 a.4.1.9 (A:9-73) Putat 76.3 0.54 3.9E-05 24.0 1.7 53 22-74 7-59 (65) 82 d1pdnc_ a.4.1.5 (C:) Paired pr 76.3 2.1 0.00015 20.5 4.8 32 22-54 21-52 (123) 83 d2hyja1 a.4.1.9 (A:8-82) Putat 75.9 0.64 4.7E-05 23.6 2.0 51 23-73 14-64 (75) 84 d1r8da_ a.6.1.3 (A:) Multidrug 75.7 0.7 5.1E-05 23.4 2.2 47 34-80 2-65 (109) 85 d3ctaa1 a.4.5.28 (A:5-89) Ta10 75.3 0.73 5.3E-05 23.2 2.2 32 23-54 4-41 (85) 86 d1lj9a_ a.4.5.28 (A:) Transcri 74.3 1.1 7.7E-05 22.3 2.8 30 25-54 34-63 (144) 87 d2ao9a1 a.4.1.17 (A:13-132) Ph 74.2 0.88 6.4E-05 22.8 2.4 24 33-56 35-58 (120) 88 d1t56a1 a.4.1.9 (A:22-94) Ethr 74.2 1.2 8.5E-05 22.0 3.0 49 26-74 15-63 (73) 89 d2d6ya1 a.4.1.9 (A:7-74) Putat 74.1 1.5 0.00011 21.4 3.5 48 23-70 11-58 (68) 90 d1ttya_ a.4.13.2 (A:) Sigma70 73.9 1.6 0.00012 21.2 3.7 43 32-74 36-83 (87) 91 d1z91a1 a.4.5.28 (A:8-144) Org 73.5 0.9 6.6E-05 22.7 2.3 30 25-54 38-67 (137) 92 d1lnwa_ a.4.5.28 (A:) MexR rep 73.5 1 7.6E-05 22.3 2.6 29 26-54 42-70 (141) 93 d1i1ga1 a.4.5.32 (A:2-61) LprA 73.0 1.7 0.00012 21.1 3.6 29 25-53 8-36 (60) 94 d3broa1 a.4.5.28 (A:3-137) Tra 72.9 2.2 0.00016 20.4 4.1 29 26-54 35-65 (135) 95 d2cg4a1 a.4.5.32 (A:4-66) Regu 72.6 1.7 0.00013 21.0 3.6 29 25-53 10-38 (63) 96 d2fxaa1 a.4.5.28 (A:6-167) Pro 71.8 1.5 0.00011 21.4 3.1 30 25-54 46-75 (162) 97 d1jt6a1 a.4.1.9 (A:2-72) Multi 71.8 1.5 0.00011 21.3 3.1 49 23-71 10-58 (71) 98 d2g3ba1 a.4.1.9 (A:2-73) Putat 71.5 3.1 0.00023 19.5 4.7 45 26-70 14-58 (72) 99 d2oi8a1 a.4.1.9 (A:8-86) Putat 71.2 2.6 0.00019 20.0 4.2 51 23-73 18-68 (79) 100 d1jgsa_ a.4.5.28 (A:) Multiple 71.0 2 0.00015 20.6 3.6 30 25-54 39-68 (138) 101 d1rkta1 a.4.1.9 (A:2-82) Hypot 70.7 0.94 6.9E-05 22.6 1.9 46 26-71 23-68 (81) 102 d1s3ja_ a.4.5.28 (A:) Putative 70.5 1.5 0.00011 21.4 2.8 31 24-54 39-69 (143) 103 d1r8ea1 a.6.1.3 (A:3-120) Tran 70.1 0.94 6.9E-05 22.6 1.7 47 34-80 3-67 (118) 104 d2gena1 a.4.1.9 (A:6-75) Proba 69.9 0.81 5.9E-05 23.0 1.4 50 24-73 10-59 (70) 105 d2cyya1 a.4.5.32 (A:5-64) Puta 69.9 2.1 0.00015 20.5 3.5 30 24-53 7-36 (60) 106 d2id3a1 a.4.1.9 (A:13-80) Puta 69.9 1.1 8.1E-05 22.2 2.1 44 27-70 19-62 (68) 107 d1d1la_ a.35.1.2 (A:) cro lamb 69.0 1.7 0.00012 21.1 2.8 34 27-62 8-41 (61) 108 d2fbia1 a.4.5.28 (A:5-140) Pro 68.1 2 0.00014 20.7 3.1 30 25-54 35-64 (136) 109 d1ntca_ a.4.1.12 (A:) DNA-bind 67.8 1.6 0.00012 21.2 2.5 30 24-53 54-83 (91) 110 d2vkva1 a.4.1.9 (A:6-67) Tetra 67.4 2.4 0.00017 20.2 3.3 46 23-68 8-53 (62) 111 d1aisb1 a.74.1.2 (B:1108-1205) 67.4 2.6 0.00019 19.9 3.6 40 31-81 59-98 (98) 112 d2fq4a1 a.4.1.9 (A:9-77) Trans 67.0 3.8 0.00028 19.0 4.3 44 23-66 13-56 (69) 113 d2fbha1 a.4.5.28 (A:8-144) Tra 66.6 2.6 0.00019 20.0 3.4 29 26-54 34-63 (137) 114 d2i10a1 a.4.1.9 (A:10-78) Puta 66.4 0.63 4.6E-05 23.6 0.2 45 23-67 9-53 (69) 115 d1zs4a1 a.35.1.9 (A:4-81) Regu 66.3 0.99 7.2E-05 22.5 1.2 37 33-70 19-55 (78) 116 d2fx0a1 a.4.1.9 (A:4-76) Hemol 66.3 4.1 0.0003 18.8 4.4 45 23-67 13-57 (73) 117 d1ui5a1 a.4.1.9 (A:5-75) A-fac 65.9 1.7 0.00012 21.1 2.3 46 23-68 14-59 (71) 118 d1mkma1 a.4.5.33 (A:1-75) Tran 65.6 1.3 9.6E-05 21.7 1.8 25 30-54 16-40 (75) 119 d1zk8a1 a.4.1.9 (A:6-77) Trans 65.6 1.5 0.00011 21.3 2.1 49 23-71 12-60 (72) 120 d2hr3a1 a.4.5.28 (A:2-146) Pro 65.1 3.2 0.00023 19.4 3.6 29 26-54 40-69 (145) 121 d2g7la1 a.4.1.9 (A:16-83) Puta 64.8 0.58 4.3E-05 23.8 -0.2 47 23-69 13-59 (68) 122 d2np5a1 a.4.1.9 (A:9-77) Trans 64.1 1.7 0.00013 21.0 2.1 48 26-73 13-60 (69) 123 d1ku9a_ a.4.5.36 (A:) DNA-bind 63.7 1.8 0.00013 21.0 2.1 23 32-54 39-61 (151) 124 d1bl0a1 a.4.1.8 (A:9-62) MarA 62.7 1.1 8.2E-05 22.1 1.0 28 31-58 16-43 (54) 125 d2bv6a1 a.4.5.28 (A:5-140) Tra 62.2 0.99 7.2E-05 22.5 0.6 31 24-54 38-68 (136) 126 d1rzsa_ a.35.1.2 (A:) cro p22 62.1 2.2 0.00016 20.5 2.3 32 36-70 12-43 (61) 127 d3c07a1 a.4.1.9 (A:15-89) Puta 61.2 5.1 0.00037 18.2 5.7 40 32-71 23-62 (75) 128 d3deua1 a.4.5.28 (A:2-141) Tra 59.1 3.2 0.00023 19.5 2.7 30 25-54 36-66 (140) 129 d1a04a1 a.4.6.2 (A:150-216) Ni 58.9 3.2 0.00023 19.5 2.7 26 31-56 18-43 (67) 130 d1ub9a_ a.4.5.28 (A:) Hypothet 58.5 3.1 0.00023 19.5 2.6 29 26-54 22-50 (100) 131 d2fd5a1 a.4.1.9 (A:1-76) Proba 58.5 1.9 0.00014 20.7 1.6 51 23-73 16-66 (76) 132 d1d5ya1 a.4.1.8 (A:3-56) Rob t 58.4 1.1 8.3E-05 22.1 0.4 27 32-58 17-43 (54) 133 d1u2wa1 a.4.5.5 (A:12-119) Cad 58.0 3.9 0.00028 19.0 3.0 27 28-54 39-65 (108) 134 d2hkua1 a.4.1.9 (A:18-87) Puta 57.6 3.2 0.00023 19.4 2.6 37 32-68 18-54 (70) 135 d1t33a1 a.4.1.9 (A:1-88) Putat 57.5 6 0.00043 17.8 5.9 40 33-73 31-70 (88) 136 d2frha1 a.4.5.28 (A:102-216) P 56.8 3.6 0.00026 19.1 2.7 28 27-54 40-69 (115) 137 d1j9ia_ a.6.1.5 (A:) Terminase 55.6 2.5 0.00018 20.1 1.7 23 34-56 2-24 (68) 138 d1r1ua_ a.4.5.5 (A:) Metal-sen 55.5 6.1 0.00044 17.8 3.7 26 29-54 26-51 (94) 139 d1fsea_ a.4.6.2 (A:) Germinati 54.1 4.3 0.00031 18.7 2.7 26 31-56 16-41 (67) 140 d1r1ta_ a.4.5.5 (A:) SmtB repr 53.9 4.6 0.00034 18.5 2.9 24 31-54 33-56 (98) 141 d1ngra_ a.77.1.2 (A:) p75 low 52.8 3.9 0.00028 18.9 2.4 47 34-81 21-67 (85) 142 d1g2ha_ a.4.1.12 (A:) Transcri 52.6 6.2 0.00045 17.8 3.3 28 26-54 26-53 (61) 143 d1rr7a_ a.4.1.14 (A:) Middle o 52.3 7.2 0.00053 17.3 3.6 34 24-57 56-89 (94) 144 d1yioa1 a.4.6.2 (A:131-200) Re 51.8 4.9 0.00035 18.4 2.7 25 31-55 24-48 (70) 145 d1l3la1 a.4.6.2 (A:170-234) Qu 50.9 5.1 0.00037 18.2 2.7 27 30-56 15-41 (65) 146 d1p4xa2 a.4.5.28 (A:126-250) S 50.8 3.1 0.00022 19.5 1.6 24 31-54 46-69 (125) 147 d2np3a1 a.4.1.9 (A:35-99) Puta 50.1 1.5 0.00011 21.4 -0.2 42 25-66 7-48 (65) 148 d2iu5a1 a.4.1.9 (A:1-71) Trans 48.0 1.8 0.00013 21.0 -0.0 38 30-67 22-59 (71) 149 d1ulya_ a.4.5.58 (A:) Hypothet 47.4 7.3 0.00053 17.3 3.0 27 28-54 26-52 (190) 150 d1a9xa1 a.92.1.1 (A:403-555) C 46.6 5.6 0.00041 18.0 2.3 26 31-56 41-66 (153) 151 d1p4wa_ a.4.6.2 (A:) Transcrip 46.5 6.1 0.00044 17.8 2.5 47 29-75 32-82 (87) 152 d1sgma1 a.4.1.9 (A:5-77) Putat 45.7 2.6 0.00019 20.0 0.5 49 23-71 11-60 (73) 153 d1hsja1 a.4.5.28 (A:373-487) S 45.6 2.7 0.0002 19.9 0.6 24 31-54 45-68 (115) 154 d2fbka1 a.4.5.28 (A:8-179) Tra 40.4 1.8 0.00013 20.9 -0.9 21 34-54 79-99 (172) 155 d1vola2 a.74.1.2 (A:208-316) T 40.4 8.7 0.00063 16.9 2.5 25 31-55 58-82 (109) 156 d1d2za_ a.77.1.2 (A:) Pelle de 39.9 11 0.00083 16.2 3.9 46 36-81 27-75 (102) 157 d1aisb2 a.74.1.2 (B:1206-1300) 34.8 13 0.00093 15.9 2.7 26 31-56 57-82 (95) 158 d2p4wa1 a.4.5.64 (A:1-194) Tra 34.3 14 0.001 15.6 3.5 24 31-54 25-48 (194) 159 d1hw1a1 a.4.5.6 (A:5-78) Fatty 33.8 11 0.00081 16.2 2.2 22 33-54 25-47 (74) 160 d2isya1 a.4.5.24 (A:2-64) Iron 33.7 12 0.00088 16.0 2.4 30 25-54 13-43 (63) 161 d1e0ga_ d.7.1.1 (A:) Membrane- 32.3 7.4 0.00054 17.3 1.1 22 33-54 9-30 (48) 162 d1ylfa1 a.4.5.55 (A:5-142) Hyp 31.4 15 0.0011 15.5 2.6 45 31-75 20-82 (138) 163 d1p4xa1 a.4.5.28 (A:1-125) Sta 29.6 4 0.00029 18.9 -0.6 22 33-54 49-70 (125) 164 d3bwga1 a.4.5.6 (A:5-82) Trans 29.3 14 0.001 15.7 2.1 24 31-54 18-42 (78) 165 d2esna1 a.4.5.37 (A:3-91) Prob 24.7 20 0.0015 14.7 2.2 19 36-54 22-40 (89) 166 d2hs5a1 a.4.5.6 (A:25-93) Puta 24.1 18 0.0013 15.0 1.9 22 33-54 24-45 (69) 167 d1jhfa1 a.4.5.2 (A:2-72) LexA 24.0 21 0.0016 14.5 5.1 35 20-54 8-45 (71) 168 d1d4ca3 d.168.1.1 (A:360-505) 23.4 22 0.0016 14.5 2.2 20 33-52 83-102 (146) 169 d1xd7a_ a.4.5.55 (A:) Hypothet 22.9 22 0.0016 14.4 3.3 46 31-76 15-78 (127) 170 d1twda_ c.1.30.1 (A:) Copper h 21.4 8.7 0.00063 16.9 -0.1 44 40-83 15-59 (247) 171 d1sfua_ a.4.5.19 (A:) 34L {Yab 21.1 20 0.0014 14.7 1.6 34 21-54 11-44 (70) 172 d1y0pa3 d.168.1.1 (A:362-504) 20.7 25 0.0018 14.1 2.3 19 33-51 82-100 (143) 173 d2ev0a1 a.4.5.24 (A:2-62) Mang 20.2 26 0.0019 14.1 5.1 25 30-54 17-41 (61) 174 d2edua1 a.60.2.7 (A:8-98) KIF2 20.1 21 0.0015 14.6 1.6 35 21-55 44-80 (91) No 1 >d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]} Probab=99.56 E-value=4.2e-15 Score=107.76 Aligned_cols=64 Identities=23% Similarity=0.454 Sum_probs=61.3 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC Q ss_conf 9999999999999983994999999863429999887558999448999999999289999960 Q gi|254781147|r 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83) Q Consensus 18 ~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83) +-..||.+|+.+|+++||||+++|+.+|+|+++|++||+|+..|+++++.+||++||+++.+|| T Consensus 6 ~~~~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~lF 69 (69) T d1y7ya1 6 DLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELF 69 (69) T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGGGC T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC T ss_conf 9999999999999983999999986829989899999879999999999999999695999979 No 2 >d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]} Probab=99.56 E-value=8.1e-15 Score=106.08 Aligned_cols=66 Identities=24% Similarity=0.473 Sum_probs=62.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC Q ss_conf 999999999999999839949999998634299998875589994489999999992899999608 Q gi|254781147|r 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83) Q Consensus 17 ~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83) ..+..||.+|+.+|+++||||+++|+.+|+|+++|++||+|+..|+++++.+||++|||++++||. T Consensus 6 ~~~~~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~ 71 (77) T d2b5aa1 6 EIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFR 71 (77) T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC T ss_conf 999999999999999809999999989797999999998699899999999999996989999854 No 3 >d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]} Probab=99.54 E-value=1.1e-14 Score=105.41 Aligned_cols=66 Identities=20% Similarity=0.348 Sum_probs=62.6 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCC Q ss_conf 999999999999998399499999986342999988755899944899999999928999996088 Q gi|254781147|r 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 (83) Q Consensus 18 ~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~P 83 (83) .+..||.+|+.+|+.+||||++||+.+|+++++|++||+|+..|+++++.+||++|||++.+||.+ T Consensus 5 ~~~~ig~~lr~~R~~~g~sq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~~ 70 (79) T d1y9qa1 5 FKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFAN 70 (79) T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGTT T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC T ss_conf 999999999999998299999999987711648999986998999999999999989879998389 No 4 >d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]} Probab=99.52 E-value=1.6e-14 Score=104.41 Aligned_cols=62 Identities=23% Similarity=0.367 Sum_probs=59.3 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHCCCHHHHCCC Q ss_conf 99999999998399499999986342999988755899-944899999999928999996088 Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLLKP 83 (83) Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~-~~~~~~l~~la~al~i~~~~l~~P 83 (83) +|.+|+.+|+++||||.+||+.+|+|+++|++||+|.. +|+++++.+||++||+++.+||.+ T Consensus 2 ig~~ik~~R~~~gltq~~la~~~gis~~~i~~~E~g~~~~ps~~~l~~ia~~l~v~~~~l~~~ 64 (68) T d1b0na2 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDE 64 (68) T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHCC T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCCC T ss_conf 799999999982999999998979799999999859989999999999999989869998399 No 5 >d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]} Probab=99.51 E-value=2.4e-14 Score=103.24 Aligned_cols=72 Identities=21% Similarity=0.310 Sum_probs=66.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC Q ss_conf 898999999999999999999839949999998634299998875589994489999999992899999608 Q gi|254781147|r 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83) Q Consensus 11 ~~~~~~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83) +++........++..++.+|+++||||++||+.+|+|+++|++||+|...|+++++.+||++|++++.+||. T Consensus 2 ~t~~~~~~~~~l~~~i~~~R~~~gltq~~lA~~lgis~~~is~~E~g~~~~s~~~l~~ia~~l~v~~~~~~~ 73 (87) T d1lmb3_ 2 LTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSP 73 (87) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCH T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHCH T ss_conf 498999999999999999999939999999988672288899998114787599999999998979999874 No 6 >d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=99.51 E-value=5.7e-14 Score=101.06 Aligned_cols=70 Identities=19% Similarity=0.231 Sum_probs=62.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHCC Q ss_conf 898999999999999999999839949999998634299998875589-994489999999992899999608 Q gi|254781147|r 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLK 82 (83) Q Consensus 11 ~~~~~~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~-~~~~~~~l~~la~al~i~~~~l~~ 82 (83) ++++.......||.+||.+|+ ++||.|||+++|+|+++||+||+|+ .+|++++|.+||++||+++++||. T Consensus 4 ~t~e~~~~~~~lG~~ir~~R~--~~t~~eLA~~~Gvs~~~ls~iE~G~~~~ps~~tl~kia~~L~v~~~~Ll~ 74 (82) T d2ofya1 4 LTAEELERGQRLGELLRSARG--DMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAA 74 (82) T ss_dssp CCHHHHHHHHHHHHHHHHHHT--TSCHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHHHT T ss_pred CCHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHH T ss_conf 888888899999999999998--07999999897179999999982986788899999999998988999985 No 7 >d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]} Probab=99.50 E-value=5.8e-15 Score=106.93 Aligned_cols=62 Identities=24% Similarity=0.355 Sum_probs=58.8 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCC Q ss_conf 99999999998399499999986342999988755899944899999999928999996088 Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 (83) Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~P 83 (83) ++.+|+.+|+++||||+++|+++|+|++++|+||+|+.+|+++++.+||++||+++++||.+ T Consensus 2 i~~ri~~lR~~~g~tq~elA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~~~~lf~~ 63 (66) T d1utxa_ 2 IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQW 63 (66) T ss_dssp EEECHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHHHEEE T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCC T ss_conf 89999999998599999998863557989999986998999999999999979879998298 No 8 >d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]} Probab=99.47 E-value=6.2e-14 Score=100.83 Aligned_cols=62 Identities=26% Similarity=0.326 Sum_probs=60.1 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC Q ss_conf 99999999999839949999998634299998875589994489999999992899999608 Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83) Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83) .+|.+|+.+|+++||||.++|+.+|+|+++|++||+|...|+++.+.+||++|+|++++||. T Consensus 3 ~ig~rik~~R~~~g~tq~~lA~~~gvs~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~Ll~ 64 (66) T d2r1jl1 3 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLK 64 (66) T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC T ss_conf 99999999999859999999999798999999998699899999999999996988999846 No 9 >d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]} Probab=99.45 E-value=2.3e-14 Score=103.36 Aligned_cols=69 Identities=17% Similarity=0.299 Sum_probs=62.9 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHCC Q ss_conf 999999999999999999839949999998634299998875589-994489999999992899999608 Q gi|254781147|r 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLK 82 (83) Q Consensus 14 ~~~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~-~~~~~~~l~~la~al~i~~~~l~~ 82 (83) +....+..+|..|+.+|+++||||+++|+++|+++++||+||||+ .+|++++|.+||.+||++++.++. T Consensus 4 ~~~~~k~~l~~~i~~~r~~~gltq~~lA~~~gis~~~is~ie~G~~~~~~~~~L~~ia~~Lg~~i~~~~~ 73 (89) T d2o38a1 4 EERQTKLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEIVIR 73 (89) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTEEEEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHEEC T ss_conf 6899999999999999999599999999999733708999984997898689999999990998887015 No 10 >d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]} Probab=99.42 E-value=7.9e-14 Score=100.21 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=57.8 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH Q ss_conf 9999999999998399499999986342999988755899944899999999928999996 Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 (83) Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l 80 (83) ..||.+|+.+|+.+||||++||+.+|+|+++|++||+|+..|+++++.+||++|||++..+ T Consensus 5 ~~iG~~I~~~R~~~gltq~~lA~~~gis~~~is~~E~G~~~p~~~~l~~la~~l~v~l~~~ 65 (78) T d1x57a1 5 LEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGK 65 (78) T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSST T ss_pred HHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC T ss_conf 8999999999998599726788718878999999980677999999999999909966456 No 11 >d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]} Probab=99.40 E-value=1.8e-13 Score=98.03 Aligned_cols=60 Identities=28% Similarity=0.305 Sum_probs=57.5 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC Q ss_conf 9999999999839949999998634299998875589994489999999992899999608 Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83) Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83) ||.+|+.+|+++||||+|||+.+|+|+++|++||+|+ +|+.+++.+||++|||++++||. T Consensus 2 ig~rik~~R~~~g~sq~elA~~~gvs~~~is~~E~g~-~~~~~~l~~ia~~l~v~~~~l~~ 61 (63) T d1r69a_ 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGK-TKRPRFLPELASALGVSVDWLLN 61 (63) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTS-CSSCTTHHHHHHHTTCCHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC-CCCHHHHHHHHHHHCCCHHHHHH T ss_conf 8999999999849969999998373999999987898-94989999999998968999844 No 12 >d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]} Probab=99.40 E-value=2.5e-13 Score=97.27 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=57.3 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC Q ss_conf 99999999999839949999998634299998875589994489999999992899999608 Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83) Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83) .||.+|+.+|+++||||+|||+.+|+++++|++||+|+..|+ +++.+||++|||++++|+. T Consensus 3 ~i~~rlr~~R~~~gltq~~lA~~~gvs~~ti~~~E~g~~~~~-~~l~~ia~~l~v~~~~Ll~ 63 (65) T d2croa_ 3 TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRP-RFLFEIAMALNCDPVWLQY 63 (65) T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSC-TTHHHHHHHTTSCHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCH-HHHHHHHHHHCCCHHHHHH T ss_conf 899999999998499999999997867949998787799999-9999999996998999833 No 13 >d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]} Probab=99.38 E-value=2.2e-13 Score=97.58 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=60.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHC Q ss_conf 9999999999999999839949999998634299998875589-99448999999999289999960 Q gi|254781147|r 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 (83) Q Consensus 16 ~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~-~~~~~~~l~~la~al~i~~~~l~ 81 (83) |+-+..|+.+|+.+|+++||||+|+|+.+|+++++||+||+|+ .+|++++|.++|++||++++..+ T Consensus 1 M~~~~~l~~~i~~~r~~~gltq~elA~~~gv~~~~is~ie~g~~~~~s~~~L~~ia~~Lg~~i~~~~ 67 (69) T d2a6ca1 1 MKMRSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEINI 67 (69) T ss_dssp HHHHHHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCCCCCCC T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 9679999999999999969999999999874784799997665201008999999999199707651 No 14 >d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]} Probab=99.35 E-value=9.9e-13 Score=93.71 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=56.9 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC Q ss_conf 99999999983994999999863429999887558999448999999999289999960 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83) |..|+.+|+++||||.+||+.+|||+++||+||+|++.|+.+.+.+|+++||++++.++ T Consensus 3 Ge~lke~r~~~glsq~~LA~~lGvs~~~is~ie~g~~~~s~~~~~kla~~lgvs~~~~L 61 (87) T d2icta1 3 GDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWL 61 (87) T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH T ss_conf 79999999986999999999972469999999985017989999999999891999998 No 15 >d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]} Probab=98.95 E-value=5.6e-10 Score=77.36 Aligned_cols=56 Identities=21% Similarity=0.215 Sum_probs=48.5 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC Q ss_conf 999999983994999999863429999887558999448999999999289999960 Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83) Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83) +||.+|+..||||+++|+.+|||+++|++||+|+..|+...+..+ ..++..++.+| T Consensus 3 ~ik~~R~~~gltQ~elA~~lGvs~~tvs~~E~G~~~P~~~~~~ll-~~l~~~Pe~v~ 58 (62) T d2ppxa1 3 RIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYL-KIIAVDPEGTA 58 (62) T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHH-HHHHHCHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH-HHHHCCHHHHH T ss_conf 889999996999999999969899999988779889999999999-99866999999 No 16 >d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]} Probab=98.63 E-value=1.7e-08 Score=68.58 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=39.1 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 99999999983994999999863429999887558999448999 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l 66 (83) ++.|+.+|++.||||+++|+.+|||+++|++||+|++.++.... T Consensus 3 ~e~~k~~R~~~gltQ~elA~~LGvs~~ti~~yE~G~r~iP~~v~ 46 (67) T d2auwa1 3 HEMFGDWMHRNNLSLTTAAEALGISRRMVSYYRTAHKIIPRTIW 46 (67) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH T ss_conf 89999999995999999999959989999999869999998999 No 17 >d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]} Probab=97.56 E-value=0.00012 Score=45.71 Aligned_cols=64 Identities=19% Similarity=0.330 Sum_probs=58.8 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHCCC Q ss_conf 999999999999839949999998634299998875589-9944899999999928999996088 Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLKP 83 (83) Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~-~~~~~~~l~~la~al~i~~~~l~~P 83 (83) --|+..++..|++-+|.-+.+|..+|-++-++..||||. ...++..|-+|+++|+.++..|-.| T Consensus 4 tgfae~lk~rreqvkmdhaalas~lgetpetvaawengeggeltltqlg~ia~~lgtsigaltpp 68 (71) T d2bnma1 4 TGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPP 68 (71) T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTGGGSCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCCCC T ss_conf 04899999999997111999999976890678886358875052999888999971441232799 No 18 >d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=97.36 E-value=0.00046 Score=42.26 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=47.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHCCCCCCCHHHHHHHHHHHC Q ss_conf 999999999999999839949999998634------2999988755899944899999999928 Q gi|254781147|r 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGF------AQSWISELETGKSTINIDNMIILAHTLD 74 (83) Q Consensus 17 ~~~~~~g~~ir~~R~~~gltq~ela~~~gi------s~~~is~iE~G~~~~~~~~l~~la~al~ 74 (83) .+-+.|+..++..|...|+||.+++..+|. |+++|+++|+ -+.+..++.++--.|. T Consensus 7 ~Ele~Fa~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~--l~LS~kn~~kLkP~L~ 68 (75) T d1e3oc2 7 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA--LNLSFKNMSKLKPLLE 68 (75) T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHH--TCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH--HCCCHHHHHHHHHHHH T ss_conf 9999999999987884365589999999987175025889999997--2457988998899999 No 19 >d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=97.33 E-value=0.00055 Score=41.80 Aligned_cols=57 Identities=25% Similarity=0.333 Sum_probs=48.4 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHCCCCCCCHHHHHHHHHHHC Q ss_conf 999999999999999983994999999863------42999988755899944899999999928 Q gi|254781147|r 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTG------FAQSWISELETGKSTINIDNMIILAHTLD 74 (83) Q Consensus 16 ~~~~~~~g~~ir~~R~~~gltq~ela~~~g------is~~~is~iE~G~~~~~~~~l~~la~al~ 74 (83) +++-+.|+..++..|...|+||.|++..+| .|+++|+++|+ -+.+..++.++--.|. T Consensus 2 L~Ele~Fa~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~--l~LS~kn~~klkPiL~ 64 (72) T d1au7a2 2 MRALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFEN--LQLSFKNACKLKAILS 64 (72) T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHT--TCSBHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH--CCCCHHHHHHHHHHHH T ss_conf 58899999999987742686299999999986186555037788885--1547988998899999 No 20 >d1dwka1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia coli [TaxId: 562]} Probab=97.18 E-value=0.00079 Score=40.86 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=58.0 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH Q ss_conf 999999999999998399499999986342999988755899944899999999928999996 Q gi|254781147|r 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 (83) Q Consensus 18 ~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l 80 (83) -|..+...|...+.++|+|-+++|+.+|.|.-|+...-.|+...+-+...++++.||++-+.. T Consensus 10 ~r~~lte~Il~AK~~kgltw~~IA~~iG~s~vwvtaa~lGQ~~l~~~~A~~l~~~L~L~~e~~ 72 (86) T d1dwka1 10 IRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSI 72 (86) T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHH T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHH T ss_conf 699999999999998399899999895988999999984578899999999999749999999 No 21 >d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=96.36 E-value=0.0017 Score=38.90 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=35.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH---HHHHHCCC Q ss_conf 399499999986342999988755899944899999---99992899 Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII---LAHTLDTP 76 (83) Q Consensus 33 ~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~---la~al~i~ 76 (83) +..|+.|+|+.+|+|.+++|++-||...++-++-.+ .++.+|.. T Consensus 1 k~~Ti~diA~~agvS~sTVSr~l~~~~~vs~~tr~rI~~~a~~lgY~ 47 (59) T d1efaa1 1 KPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYI 47 (59) T ss_dssp CCCCHHHHHHTTTSCHHHHHHHHTTCSSCCTHHHHHHHHHHHHHTCC T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 98889999989797999999997799867999999999999998898 No 22 >d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]} Probab=96.35 E-value=0.0027 Score=37.65 Aligned_cols=43 Identities=9% Similarity=0.150 Sum_probs=35.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH---HHHHCCC Q ss_conf 994999999863429999887558999448999999---9992899 Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL---AHTLDTP 76 (83) Q Consensus 34 gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~l---a~al~i~ 76 (83) +.|..|+|+.+|+|.+++|++-||...++-++-.++ ++.||.. T Consensus 1 NvTi~dvA~~agvS~~TVSr~Ln~~~~Vs~~tr~rV~~aa~~lgY~ 46 (57) T d2hsga1 1 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYR 46 (57) T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHTCC T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 9699999989895999999996898867989999999999998869 No 23 >d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]} Probab=95.98 E-value=0.0069 Score=35.25 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=39.6 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 9999999999999839949999998634299998875589994489 Q gi|254781147|r 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 (83) Q Consensus 19 ~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~ 64 (83) ...++..|+....+.+++|.++|+.+|+|+|+||++-++....+.. T Consensus 26 ~~~v~~~IK~Fl~~h~I~Q~~Va~~TGlsQS~iSq~L~~g~~M~~~ 71 (94) T d1ic8a2 26 PWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQ 71 (94) T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBCCCCHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHH T ss_conf 9999999999999868859999999801599999998279985179 No 24 >d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=95.98 E-value=0.0044 Score=36.40 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=34.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH---HHHHCCCH Q ss_conf 4999999863429999887558999448999999---99928999 Q gi|254781147|r 36 TQKEIRNRTGFAQSWISELETGKSTINIDNMIIL---AHTLDTPL 77 (83) Q Consensus 36 tq~ela~~~gis~~~is~iE~G~~~~~~~~l~~l---a~al~i~~ 77 (83) |+.|+|+.+|+|.+++|++-||...++-++-.++ ++.||..+ T Consensus 2 Ti~dvA~~agVS~sTVSr~ln~~~~vs~~tr~rV~~~a~~lgY~p 46 (57) T d1qpza1 2 TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSP 46 (57) T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHHHHTCCC T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC T ss_conf 899999998959999999977998568999999999999988897 No 25 >d2awia1 a.35.1.11 (A:2-66) PrgX {Enterococcus faecalis [TaxId: 1351]} Probab=95.88 E-value=0.016 Score=33.08 Aligned_cols=59 Identities=15% Similarity=0.327 Sum_probs=53.8 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC Q ss_conf 999999999983994999999863429999887558999448999999999289999960 Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83) Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83) +|..++++|++.++-|-++-.-+ +|.+.+-++|...+.++++.|.++++-||+...+.+ T Consensus 3 ig~~lkqir~elnyhqidlysgi-msksiyikveadsrpisveel~kfserlginffeil 61 (65) T d2awia1 3 IGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEADSRPISVEELSKFSERLGVNFFEIL 61 (65) T ss_dssp HHHHHHHHHHHTTCCHHHHHTTT-SCHHHHHHHHTTCSCCBHHHHHHHHHHHTSCHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHH T ss_conf 00699999998445675887512-201269998448886449999989998376399998 No 26 >d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]} Probab=95.28 E-value=0.023 Score=32.16 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=45.4 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC Q ss_conf 99999999839949999998634299998875589994489999999992899999608 Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83) Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83) ..|+..-..+|+|..+|+...|++.+++...-. .|....=..||++||+++.+++. T Consensus 12 adI~AaL~krG~sLa~lsr~~gls~stl~naL~---rp~pKgEriIA~aLg~~P~eIWP 67 (74) T d1nera_ 12 ADVIAGLKKRKLSLSALSRQFGYAPTTLANALE---RHWPKGEQIIANALETKPEVIWP 67 (74) T ss_dssp HHHHHHHTTSSCCHHHHHHHHSCCHHHHHHTTT---SSCHHHHHHHHHHTTSCHHHHST T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC---CCCHHHHHHHHHHHCCCHHHHCC T ss_conf 999999999688799999990998789999983---77858999999997859889594 No 27 >d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=94.93 E-value=0.0046 Score=36.29 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=34.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCC------CCHHHHHHHHHHHCCCH Q ss_conf 94999999863429999887558999------44899999999928999 Q gi|254781147|r 35 LTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDTPL 77 (83) Q Consensus 35 ltq~ela~~~gis~~~is~iE~G~~~------~~~~~l~~la~al~i~~ 77 (83) +|.+|+|+.+|+|.+++|++-||... -+-+.+...++.+|..+ T Consensus 1 vTl~diA~~agvS~sTVSrvLn~~~~~~~vs~~tr~rV~~~a~~lgY~p 49 (59) T d1uxda_ 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHP 49 (59) T ss_dssp CCHHHHHHHHTSCTTHHHHHHHTCGGGTTCTTTTHHHHHHHHHHHTCCC T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC T ss_conf 9799999997969999999984998767579999999999999988796 No 28 >d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]} Probab=93.52 E-value=0.061 Score=29.63 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=34.9 Q ss_pred HHHHHHHHHHHHHH-HHCC-CCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999-9839-94999999863429999887558 Q gi|254781147|r 17 RERMIFVNNFRNIR-KEAK-LTQKEIRNRTGFAQSWISELETG 57 (83) Q Consensus 17 ~~~~~~g~~ir~~R-~~~g-ltq~ela~~~gis~~~is~iE~G 57 (83) .+...++.+++.++ ...| +||.++++.+|+|..+|++.-+- T Consensus 39 ~E~~~la~R~~ia~~L~~G~~s~reI~~~~gvs~aTItR~s~~ 81 (101) T d1jhga_ 39 DEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNS 81 (101) T ss_dssp HHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999999999999908967999999969875778899999 No 29 >d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]} Probab=93.18 E-value=0.051 Score=30.11 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=25.8 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999983994999999863429999887 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) +.-++.+. +.|+|++++|+++|.|+++|++. T Consensus 9 A~a~~~L~-e~g~t~~~iA~~~Gks~~~V~~~ 39 (93) T d1vz0a1 9 ARGYQALL-EMGLTQEEVARRVGKARSTVANA 39 (93) T ss_dssp HHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHH T ss_conf 99999999-84999999999985146999999 No 30 >d2ox6a1 a.35.1.6 (A:5-166) Hypothetical protein SO3848 {Shewanella oneidensis [TaxId: 70863]} Probab=92.69 E-value=0.22 Score=26.32 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=39.4 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH Q ss_conf 999999999839949999998634299998875589994489999999 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la 70 (83) +-.++.+|...|+|.+++++..+.|..-+-.||.|....+...-.++. T Consensus 5 aie~~ylr~slglt~aqv~~l~k~se~dv~aweage~~~~~laqkkll 52 (162) T d2ox6a1 5 AIEMSYLRQSLSLSAAQVGQLTNHSEAEVLAWENAETQAPELAQKKLL 52 (162) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHC T ss_conf 687999999707789998887455777755355057767527786450 No 31 >d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]} Probab=91.62 E-value=0.12 Score=27.88 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=27.5 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999999998399499999986342999988755 Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56 (83) Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~ 56 (83) .+.-++.+. ..|+|++++|+++|.|.++|+++-. T Consensus 19 ~A~a~~~l~-~~g~s~~eiA~~~G~s~~~V~~~l~ 52 (114) T d1r71a_ 19 IADFIGREL-AKGKKKGDIAKEIGKSPAFITQHVT 52 (114) T ss_dssp HHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHG T ss_pred HHHHHHHHH-HHCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999999998-8099899999997772999999999 No 32 >d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]} Probab=91.18 E-value=0.11 Score=28.08 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=22.8 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 999839949999998634299998875 Q gi|254781147|r 29 IRKEAKLTQKEIRNRTGFAQSWISELE 55 (83) Q Consensus 29 ~R~~~gltq~ela~~~gis~~~is~iE 55 (83) .....|.|..++|+..||+.++|.+|- T Consensus 18 ~~~~~g~s~~~vA~~lGIs~~tl~~W~ 44 (89) T d2jn6a1 18 YENSDGASLQQIANDLGINRVTLKNWI 44 (89) T ss_dssp HTTGGGSCHHHHHHHHTSCHHHHHHHH T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 998299859999999798988999999 No 33 >d1s4ka_ a.35.1.6 (A:) Putative cytoplasmic protein YdiL {Salmonella typhimurium [TaxId: 90371]} Probab=90.03 E-value=0.35 Score=25.12 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=40.9 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 99999999983994999999863--42999988755899944899999999 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAH 71 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~g--is~~~is~iE~G~~~~~~~~l~~la~ 71 (83) +..|..+|+..-||..|-|.-++ ++..+..++|+|...++.+.+..+.. T Consensus 5 ~~ELQalR~if~mti~EaA~~I~~~~~s~tWQqWE~Gd~~IP~~Vi~~l~~ 55 (120) T d1s4ka_ 5 ALELQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIPISPEIIARLKE 55 (120) T ss_dssp HHHHHHHHHHTTCCHHHHHHHTSSSCCHHHHHHHHHTSSCCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 899999999999759999999965766899999874898998999999999 No 34 >d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} Probab=89.70 E-value=0.15 Score=27.39 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=25.5 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999983994999999863429999887558 Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 (83) Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G 57 (83) ++.++ ..|.|..++|...|||+++|.++--. T Consensus 14 a~~l~-~~G~s~~~iA~~~gVSr~TiYry~pa 44 (47) T d1ijwc_ 14 ISRLL-EKGHPRQQLAIIFGIGVSTLYRYFPA 44 (47) T ss_dssp HHHHH-HTTCCHHHHHHHHTCCHHHHHHHSCS T ss_pred HHHHH-HCCCCHHHHHHHHCCCHHHHHHHCCC T ss_conf 99999-88997999999979699999855775 No 35 >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} Probab=89.18 E-value=0.22 Score=26.35 Aligned_cols=33 Identities=9% Similarity=0.264 Sum_probs=29.3 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999999983994999999863429999887 Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) -+.-++.++..-.+|..|+|+.+|+|.++++++ T Consensus 8 ~~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~~ 40 (71) T d1z05a1 8 AGRVYKLIDQKGPISRIDLSKESELAPASITKI 40 (71) T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 999999999859948999999988788789999 No 36 >d2csfa1 a.35.1.7 (A:8-95) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Probab=89.01 E-value=0.59 Score=23.81 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=49.3 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCCCC------HHHHHHHHHHHCCCHHH Q ss_conf 9999999999998399499999986-342999988755899944------89999999992899999 Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKSTIN------IDNMIILAHTLDTPLWK 79 (83) Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~~~~~------~~~l~~la~al~i~~~~ 79 (83) ..++.+|+...+..+++|+-+|+.+ |.|++++|.+-+....++ ..++.++-..|+.|..+ T Consensus 13 ~~Ia~~i~~eL~~~~IsQ~~Fak~vL~rSQGtlSdLLrkpkp~~~~~~sg~e~~~rm~~wL~lPe~~ 79 (88) T d2csfa1 13 AAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSPENRTLWENLCTIRRFLNLPQHE 79 (88) T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHTSCHHH T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHH T ss_conf 9999999999999497799999999831807799998089995223177889999999998174888 No 37 >d1nr3a_ d.236.1.1 (A:) DNA-binding protein Tfx {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=87.60 E-value=0.0076 Score=35.02 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=23.8 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 83994999999863429999887558 Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETG 57 (83) Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G 57 (83) ++||||+|.|+.+|.|++.||-||+. T Consensus 3 ~kGltQ~eIA~~LgTSraNIs~IEk~ 28 (122) T d1nr3a_ 3 ERGWSQKKIARELKTTRQNVSAIERK 28 (122) T ss_dssp CCSCSSCSTHHHHHHCCSSSCCHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 25677999999977658899999999 No 38 >d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} Probab=87.40 E-value=0.21 Score=26.50 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=29.3 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999983994999999863429999887 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) ..-++.+|....+|..|+|+.+|+|.++++++ T Consensus 8 ~~Il~~i~~~g~~sr~eLa~~~gLS~~Tvs~i 39 (70) T d1z6ra1 8 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKI 39 (70) T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 99999999949928999999989499999999 No 39 >d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]} Probab=87.08 E-value=0.31 Score=25.45 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=27.6 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999998399499999986342999988755 Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56 (83) Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~ 56 (83) +.+-.++.-.|+|++|+|+.+|+|.+++...-. T Consensus 27 r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~~~ 59 (71) T d1rp3a2 27 KLVIQLIFYEELPAKEVAKILETSVSRVSQLKA 59 (71) T ss_dssp HHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHH T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999999986848999999997989999999999 No 40 >d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]} Probab=86.91 E-value=0.63 Score=23.64 Aligned_cols=39 Identities=13% Similarity=0.213 Sum_probs=30.1 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-----HCCCCCC Q ss_conf 999999999983994999999863429999887-----5589994 Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL-----ETGKSTI 61 (83) Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~i-----E~G~~~~ 61 (83) +-++|-.+ .+.|+|..++|++.+||.+++++| |+|...| T Consensus 19 LR~Riv~~-~~~G~s~r~aA~rf~VS~s~v~k~l~r~reTG~i~P 62 (63) T d1k78a1 19 VRQRIVEL-AHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKP 62 (63) T ss_dssp HHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCC T ss_pred HHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC T ss_conf 99999999-995998999999959779999999999997268899 No 41 >d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]} Probab=86.52 E-value=0.32 Score=25.34 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=25.6 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 999999839949999998634299998875589 Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 (83) Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~ 58 (83) |+.+..--.++|.|+|...||+.++||.|-..+ T Consensus 17 i~~~e~g~k~sq~eIA~~fGv~~STvs~IlKnK 49 (66) T d1hlva1 17 IQEVEENPDLRKGEIARRFNIPPSTLSTILKNK 49 (66) T ss_dssp HHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTH T ss_pred HHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 999980872109999999599764799999879 No 42 >d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]} Probab=86.11 E-value=0.55 Score=23.98 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=43.4 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCC---CC---HHHHHHHHHHHCCC Q ss_conf 9999999999998399499999986-3429999887558999---44---89999999992899 Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKST---IN---IDNMIILAHTLDTP 76 (83) Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~~~---~~---~~~l~~la~al~i~ 76 (83) ..++.+|+...+..+++|+-+|+.+ |.|+.++|.+-+.-.. .+ -++..++-.-|+-| T Consensus 12 ~~i~~~v~~~L~~~~I~Q~~Fa~~VL~rsQGtlSdLL~~PKPW~kl~~~gR~~y~RM~~WL~~p 75 (87) T d1x2la1 12 AEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQFLSDE 75 (87) T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHHCCCCGGGCCHHHHHHHHHHHHHHTCT T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCH T ss_conf 9999999999999498799999999830847899998489996886587789999999982687 No 43 >d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]} Probab=85.65 E-value=0.47 Score=24.39 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=27.7 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999998399499999986342999988755 Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56 (83) Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~ 56 (83) +.+-.+|.-.|||++|+|+.+|+|++++...-+ T Consensus 22 R~v~~L~y~~~ls~~EIA~~lgiS~~aV~~~l~ 54 (106) T d1s7oa_ 22 MNYIELYYADDYSLAEIADEFGVSRQAVYDNIK 54 (106) T ss_dssp HHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999898999199999999998969999999999 No 44 >d2o4aa1 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Human (Homo sapiens) [TaxId: 9606]} Probab=85.46 E-value=0.97 Score=22.51 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=46.9 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCCC------CHHHHHHHHHHHCCCHHH Q ss_conf 999999999998399499999986-34299998875589994------489999999992899999 Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKSTI------NIDNMIILAHTLDTPLWK 79 (83) Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~~~~------~~~~l~~la~al~i~~~~ 79 (83) .++.+|+...+..+++|+-+|+.+ |.|++++|.+-+....+ .-.++.++-.-|+.|-.+ T Consensus 5 eI~~~i~~eL~~~~IsQ~~Fak~vL~rSQgtlSdLL~~pkpw~~ls~sgre~f~Rm~~wL~lP~~~ 70 (83) T d2o4aa1 5 EIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEAE 70 (83) T ss_dssp THHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHTSCHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH T ss_conf 999999999999497799999999831807799998189994154087779999999998181988 No 45 >d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]} Probab=84.74 E-value=0.84 Score=22.90 Aligned_cols=52 Identities=15% Similarity=0.161 Sum_probs=35.2 Q ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 9999999999998--399499999986342999988755899944899999999 Q gi|254781147|r 20 MIFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83) Q Consensus 20 ~~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83) .++..-++.+.+. .+.|..++|+.+|||.+++..+...+-..-...+..+.+ T Consensus 11 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~y~~F~sKe~L~~~~~~~~~~ 64 (78) T d2o7ta1 11 HIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRNFPDRFTLDMACAQYLFN 64 (78) T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 999999999998491406799999883998879999886999999999999999 No 46 >d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]} Probab=84.58 E-value=0.46 Score=24.44 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=23.9 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 83994999999863429999887558 Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETG 57 (83) Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G 57 (83) ...+|..|+|+.+|+|...+++||+- T Consensus 26 ~~~~tl~eIa~~lgiS~erVrqi~~~ 51 (61) T d1ku3a_ 26 GREHTLEEVGAYFGVTRERIRQIENK 51 (61) T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99778999889979889999999999 No 47 >d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} Probab=84.42 E-value=0.43 Score=24.59 Aligned_cols=29 Identities=17% Similarity=0.412 Sum_probs=25.0 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999983994999999863429999887 Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) -|+.+++ ..+|..|+|+.+|+|.++++++ T Consensus 4 Il~~i~~-~pisr~eLa~~~gls~~TVs~~ 32 (62) T d2hoea1 4 ILKRIMK-SPVSRVELAEELGLTKTTVGEI 32 (62) T ss_dssp SHHHHHH-SCBCHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHH-CCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999997-8969999999989399999999 No 48 >d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} Probab=82.55 E-value=0.37 Score=24.99 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9949999998634299998875 Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISELE 55 (83) Q Consensus 34 gltq~ela~~~gis~~~is~iE 55 (83) .+||+|+|..+|+|+.+++++- T Consensus 29 ~lt~~~lA~~~G~sRetvsr~L 50 (69) T d1i5za1 29 KITRQEIGQIVGCSRETVGRIL 50 (69) T ss_dssp ECCHHHHHHHHTCCHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHH T ss_conf 7899999989799799999999 No 49 >d1wh8a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]} Probab=82.38 E-value=0.98 Score=22.48 Aligned_cols=58 Identities=14% Similarity=0.278 Sum_probs=43.7 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCC---CC---HHHHHHHHHHHCCC Q ss_conf 99999999999998399499999986-3429999887558999---44---89999999992899 Q gi|254781147|r 19 RMIFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKST---IN---IDNMIILAHTLDTP 76 (83) Q Consensus 19 ~~~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~~~---~~---~~~l~~la~al~i~ 76 (83) -..++.+|+...+..+++|+-+|+.+ |.|+.++|.+-+.-.. .+ -++..++-.-|+-| T Consensus 29 T~~Ia~~v~~~L~~~~I~Q~~Fa~~VL~rSQGtlSdLL~~PKPW~kl~~~gR~~y~RM~~wL~~p 93 (111) T d1wh8a_ 29 TYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQLWLNDP 93 (111) T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHHSCCCTTTSCHHHHHHHHHHHHHHHCT T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCH T ss_conf 99999999999998583299999999800827899998389990676688889999999981587 No 50 >d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Probab=82.37 E-value=0.41 Score=24.75 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 3994999999863429999887 Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 33 ~gltq~ela~~~gis~~~is~i 54 (83) ..+||+|+|..+|+|+.+++++ T Consensus 29 ~~lt~~elA~~~g~sretvsr~ 50 (80) T d3e5ua1 29 MPLSQKSIGEITGVHHVTVSRV 50 (80) T ss_dssp SCCCHHHHHHHHTCCHHHHHHH T ss_pred ECCCHHHHHHHHCCCHHHHHHH T ss_conf 3799999999988778899999 No 51 >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Probab=81.99 E-value=0.55 Score=23.98 Aligned_cols=30 Identities=7% Similarity=0.119 Sum_probs=23.7 Q ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999983-994999999863429999887 Q gi|254781147|r 25 NFRNIRKEA-KLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 25 ~ir~~R~~~-gltq~ela~~~gis~~~is~i 54 (83) -+..+-... .+|+.++|+.+|+++++++++ T Consensus 26 iL~~L~~~~~~~t~~eLa~~~~i~~~tvs~~ 56 (109) T d2d1ha1 26 VLLKMVEIEKPITSEELADIFKLSKTTVENS 56 (109) T ss_dssp HHHHHHHHCSCEEHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999997698988999999988567699999 No 52 >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=81.91 E-value=1.1 Score=22.23 Aligned_cols=34 Identities=6% Similarity=0.121 Sum_probs=26.7 Q ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999839-94999999863429999887 Q gi|254781147|r 21 IFVNNFRNIRKEAK-LTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 21 ~~g~~ir~~R~~~g-ltq~ela~~~gis~~~is~i 54 (83) ..-.-+..+....+ +|..+||+.+|||..+|.+. T Consensus 8 R~~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rd 42 (65) T d1j5ya1 8 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQD 42 (65) T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 99999999998599785999999979899999999 No 53 >d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]} Probab=81.66 E-value=0.93 Score=22.63 Aligned_cols=44 Identities=11% Similarity=0.093 Sum_probs=31.3 Q ss_pred HHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 9999-9999998399499999986342999988755899944899 Q gi|254781147|r 22 FVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 (83) Q Consensus 22 ~g~~-ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~ 65 (83) +++. +.....-..+|..++|+.+|+|.++|.++=+.-.--+... T Consensus 23 ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kklG~~gf~e 67 (83) T d2o3fa1 23 LADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGFQD 67 (83) T ss_dssp HHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHH T ss_pred HHHHHHCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHH T ss_conf 999998299999883199999997989989999999958998999 No 54 >d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} Probab=81.48 E-value=0.43 Score=24.63 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=30.8 Q ss_pred CCCHHHHHHHHHHH-HHHHHHH------------HCCC-CCCCHHHHHHHHHHHC Q ss_conf 99499999986342-9999887------------5589-9944899999999928 Q gi|254781147|r 34 KLTQKEIRNRTGFA-QSWISEL------------ETGK-STINIDNMIILAHTLD 74 (83) Q Consensus 34 gltq~ela~~~gis-~~~is~i------------E~G~-~~~~~~~l~~la~al~ 74 (83) .+||+|+|..+|+| +.+++++ .+++ ..++.+.|.++|.-++ T Consensus 31 ~lTqeeLA~~lG~s~ReTVsR~L~~L~~~GlI~~~~~~i~I~D~~~L~~~A~~~d 85 (100) T d2bgca1 31 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLD 85 (100) T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHCHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECCCEEEEECHHHHHHHHCCCC T ss_conf 6699999988387448899999999987978897599999928999999864360 No 55 >d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Probab=81.28 E-value=0.45 Score=24.50 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=20.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 3994999999863429999887 Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 33 ~gltq~ela~~~gis~~~is~i 54 (83) ..+||+|+|..+|+|+.+++++ T Consensus 29 ~~~t~~eiA~~lG~sretvsr~ 50 (80) T d1ft9a1 29 VDFTVEEIANLIGSSRQTTSTA 50 (80) T ss_dssp ECCCHHHHHHHHCSCHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHH T ss_conf 3789999999979889999999 No 56 >d1wh6a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]} Probab=81.17 E-value=1 Score=22.44 Aligned_cols=40 Identities=10% Similarity=0.233 Sum_probs=35.5 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCC Q ss_conf 99999999999998399499999986-34299998875589 Q gi|254781147|r 19 RMIFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGK 58 (83) Q Consensus 19 ~~~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~ 58 (83) -..++.+|+...+..+++|+-+|+.+ |.|+.++|.+-+.- T Consensus 19 T~~I~~~v~~eL~~~~IsQ~~Fa~~VL~rSQGtlSdLL~~P 59 (101) T d1wh6a_ 19 TLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRP 59 (101) T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCC T ss_conf 99999999999999497699999999810817899998479 No 57 >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Probab=80.96 E-value=0.46 Score=24.42 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=20.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 3994999999863429999887 Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 33 ~gltq~ela~~~gis~~~is~i 54 (83) ..+||+|+|..+|+++.++|+. T Consensus 26 i~lt~~elA~~lg~sr~tvsr~ 47 (73) T d1zyba1 26 FKVKMDDLARCLDDTRLNISKT 47 (73) T ss_dssp EECCHHHHHHHHTSCHHHHHHH T ss_pred EECCHHHHHHHHCCCHHHHHHH T ss_conf 5069999998979889999999 No 58 >d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Probab=80.94 E-value=0.55 Score=24.00 Aligned_cols=57 Identities=14% Similarity=0.062 Sum_probs=43.7 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCC-----CCCCHHHHHHHHHHHCCC Q ss_conf 9999999999998399499999986-34299998875589-----994489999999992899 Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGK-----STINIDNMIILAHTLDTP 76 (83) Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~-----~~~~~~~l~~la~al~i~ 76 (83) ..++..|+...+..+++|+-+|+.+ |.|++++|.+-+.- ....-++..++-.-|+-| T Consensus 5 ~~I~~~i~~eL~~~~IsQ~~Fa~~vL~rsQGtlSdLL~kPKPW~~l~~gre~y~RM~~wL~~p 67 (80) T d1s7ea2 5 KEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEP 67 (80) T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHTSSSCSSHHHHHTTSCCTTCCCSSCHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHCCH T ss_conf 999999999999959879999999974380789998839997032132569999999998387 No 59 >d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Probab=80.74 E-value=0.44 Score=24.53 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=27.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHH-----HCC-------C-CCCCHHHHHHHHH Q ss_conf 3994999999863429999887-----558-------9-9944899999999 Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL-----ETG-------K-STINIDNMIILAH 71 (83) Q Consensus 33 ~gltq~ela~~~gis~~~is~i-----E~G-------~-~~~~~~~l~~la~ 71 (83) ..+||+|+|..+|+|+.+++++ +.| . .-.+.+.|.++|+ T Consensus 28 ~~lt~~eLA~~~G~sretvsr~L~~l~~~glI~~~~~~i~I~d~~~L~~~a~ 79 (81) T d2gaua1 28 IYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKIIDCDRLQKTAR 79 (81) T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHH T ss_pred ECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHHH T ss_conf 0689999999979989999999999998997896399999838999999985 No 60 >d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]} Probab=80.50 E-value=0.81 Score=22.98 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=26.9 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999839949999998634299998875 Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELE 55 (83) Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~iE 55 (83) .+-.+|.-.|+|..|+|+.+|+|++++...- T Consensus 25 ~vl~L~~~e~ls~~EIA~~lgiS~~aV~~~l 55 (106) T d1xsva_ 25 NYLELFYLEDYSLSEIADTFNVSRQAVYDNI 55 (106) T ss_dssp HHHHHHHTSCCCHHHHHHHTTCCHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999999908759999999895999999999 No 61 >d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]} Probab=80.08 E-value=0.72 Score=23.28 Aligned_cols=32 Identities=9% Similarity=0.137 Sum_probs=27.5 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999983994999999863429999887 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) -..|...-.+.++.+.+.|+.+|||++++.+- T Consensus 22 r~~I~~aL~~~~gn~~~aA~~LGIsR~TL~rk 53 (60) T d1umqa_ 22 WEHIQRIYEMCDRNVSETARRLNMHRRTLQRI 53 (60) T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHH T ss_conf 99999999996685999999989889999999 No 62 >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Probab=79.41 E-value=0.93 Score=22.64 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=26.3 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999983994999999863429999887 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) ..-|..+....+.|+.++|+.+|++.++++++ T Consensus 33 ~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~ 64 (139) T d2a61a1 33 FDILQKIYFEGPKRPGELSVLLGVAKSTVTGL 64 (139) T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHH T ss_conf 99999999769989999999839881442699 No 63 >d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]} Probab=79.34 E-value=0.35 Score=25.16 Aligned_cols=55 Identities=9% Similarity=0.018 Sum_probs=38.7 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCH Q ss_conf 9999999998399499999986342999988755899944899999999928999 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~ 77 (83) +..+-.-+--.++|..++|+.+|+|.+++.++...+...-...+..+...+.-.+ T Consensus 13 a~~~~~~~G~~~~ti~~Ia~~agvs~~s~y~~F~~K~~l~~~~~~~~~~~~~~~~ 67 (79) T d2fbqa1 13 AEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRFLGPFCASL 67 (79) T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 9999998693504099999998828557878776999999977999999999999 No 64 >d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]} Probab=79.05 E-value=1 Score=22.36 Aligned_cols=31 Identities=13% Similarity=0.035 Sum_probs=26.9 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999999983994999999863429999887 Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) +.+-.+|.-.|+|.+|+|+.+|+|.+++... T Consensus 24 r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~ 54 (68) T d1or7a1 24 RMAITLRELDGLSYEEIAAIMDCPVGTVRSR 54 (68) T ss_dssp HHHHHHHHTTCCCHHHHHHHTTSCHHHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999999990989999999989499999999 No 65 >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=79.00 E-value=0.55 Score=23.98 Aligned_cols=31 Identities=6% Similarity=0.102 Sum_probs=25.1 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999999983994999999863429999887 Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) +-|..+....-+|.+|||+.+|||+++|.+. T Consensus 9 ~iL~~L~~~~~~s~~eLa~~l~vS~~ti~r~ 39 (63) T d1biaa1 9 KLIALLANGEFHSGEQLGETLGMSRAAINKH 39 (63) T ss_dssp HHHHHHTTSSCBCHHHHHHHHTSCHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999999789587999999989399999999 No 66 >d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]} Probab=78.88 E-value=1.2 Score=21.97 Aligned_cols=32 Identities=3% Similarity=-0.052 Sum_probs=27.9 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999983994999999863429999887 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) -..|+.+-+..+..+.+.|+.+||+++++.+- T Consensus 51 ~~~i~~aL~~~~gn~~~aA~~LGisR~tL~~k 82 (89) T d1etxa_ 51 QPLLDMVMQYTRGNATRAALMMGINRGTLRKK 82 (89) T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH T ss_conf 99999999992996999999989789999999 No 67 >d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]} Probab=78.87 E-value=1.2 Score=22.01 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=27.3 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999983994999999863429999887558 Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 (83) Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G 57 (83) ..|+.++ +.|++-.++|+.+||+++++.++-+. T Consensus 9 ~~V~~L~-~~G~gat~IAk~lgI~R~SVYR~L~~ 41 (43) T d1gdta1 9 DAVLNMW-QQGLGASHISKTMNIARSTVYKVINE 41 (43) T ss_dssp HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHS T ss_pred HHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999-94898999999979879999999860 No 68 >d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]} Probab=78.82 E-value=0.34 Score=25.19 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=39.2 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC Q ss_conf 999999999839949999998634299998875589994489999999992899 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~ 76 (83) +..+-.-+--.++|..++|+.+|+|.+++..+...+...-...+..+.+.+.-. T Consensus 13 a~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~ 66 (74) T d1v7ba1 13 AIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMHELLADDWDKE 66 (74) T ss_dssp HHHHHHHSCSTTCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHH T ss_conf 999999859563579999988496922385507999999999999999999999 No 69 >d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]} Probab=78.58 E-value=0.44 Score=24.58 Aligned_cols=53 Identities=9% Similarity=0.029 Sum_probs=38.5 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC Q ss_conf 99999999983994999999863429999887558999448999999999289 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i 75 (83) +..+-.-+--.++|..++|+.+|+|++++..+..++...=...+..+.+.+.- T Consensus 13 a~~l~~~~G~~~~s~~~Ia~~agvs~~~iY~~F~sK~~L~~~~~~~~~~~~~~ 65 (74) T d2g7sa1 13 ARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEA 65 (74) T ss_dssp HHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 99999985915067999999878184169888839999999999999999999 No 70 >d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]} Probab=78.52 E-value=0.46 Score=24.45 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=42.5 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH Q ss_conf 9999999998399499999986342999988755899944899999999928999996 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l 80 (83) +..+-.-.--.++|..++|+.+|+|++++..+...+...-...+..+.+.+.-.+.+. T Consensus 12 a~~l~~~~G~~~~ti~~Ia~~agvs~~~iY~~F~~k~~Ll~~~~~~~~~~~~~~~~~~ 69 (75) T d2id6a1 12 AVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTEKLQKEFENF 69 (75) T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999998393516799999884998889988887999999999999999999999999 No 71 >d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]} Probab=78.38 E-value=1.4 Score=21.58 Aligned_cols=54 Identities=9% Similarity=0.081 Sum_probs=37.3 Q ss_pred HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 999999999999--839949999998634299998875589994489999999992 Q gi|254781147|r 20 MIFVNNFRNIRK--EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83) Q Consensus 20 ~~~g~~ir~~R~--~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83) .++..-++-+.. -.++|..++|+.+|+|.+++.++..++...=...+....+.+ T Consensus 8 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~y~~F~~K~~l~~~~~~~~~~~~ 63 (72) T d1pb6a1 8 AILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIW 63 (72) T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 99999999999859250679999998697867999888699999999999999999 No 72 >d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]} Probab=78.18 E-value=0.37 Score=25.03 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=39.5 Q ss_pred HHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC Q ss_conf 99999999999---839949999998634299998875589994489999999992899 Q gi|254781147|r 21 IFVNNFRNIRK---EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 (83) Q Consensus 21 ~~g~~ir~~R~---~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~ 76 (83) ++..-+.-+-+ -.++|..++|+.+|+|++++..+..++...-...+..+.+-+.-| T Consensus 7 Ii~aa~~l~~e~~G~~~~t~~~Ia~~agvs~~~iy~hF~~K~~L~~~~~~~~~~~~~~~ 65 (68) T d1z0xa1 7 IIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEAIEEHFQEP 65 (68) T ss_dssp HHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTCCCC T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCC T ss_conf 99999999987679231679999998772656899962999999999999999654534 No 73 >d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]} Probab=78.09 E-value=0.36 Score=25.04 Aligned_cols=47 Identities=4% Similarity=0.119 Sum_probs=35.7 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHH Q ss_conf 83994999999863429999887558999448999999999289999 Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 (83) Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~ 78 (83) -.+.|..++|+.+|+|++++.++..++...-...+....+.+.-.+. T Consensus 24 ~~~~s~~~Ia~~agvs~~~lY~~F~~K~~L~~~~~~~~~~~~~~~~~ 70 (77) T d2gfna1 24 ISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDIQGDRYR 70 (77) T ss_dssp GGGCCHHHHHHHHSSCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 04057999999878887799888839999999999999999999999 No 74 >d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]} Probab=77.94 E-value=0.87 Score=22.80 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=23.2 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 83994999999863429999887558 Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETG 57 (83) Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G 57 (83) ...+|++++|+..|+|+..|.+||.. T Consensus 23 ~~~~tl~eI~~~lgiSrerVrqie~~ 48 (68) T d2p7vb1 23 NTDYTLEEVGKQFDVTRERIRQIEAK 48 (68) T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 98688999999979789999999999 No 75 >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=77.49 E-value=1.4 Score=21.49 Aligned_cols=32 Identities=9% Similarity=0.229 Sum_probs=27.4 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999983994999999863429999887 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) +.-+..+...-..|+.++|+.+|+++++++.+ T Consensus 23 ~~v~~~L~~~g~~t~~eia~~~~i~~~~v~~~ 54 (109) T d1sfxa_ 23 VRIYSLLLERGGMRVSEIARELDLSARFVRDR 54 (109) T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHH T ss_conf 99999988238998999999857983559999 No 76 >d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]} Probab=77.34 E-value=1.3 Score=21.72 Aligned_cols=49 Identities=14% Similarity=-0.029 Sum_probs=36.1 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC Q ss_conf 9999998399499999986342999988755899944899999999928 Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 (83) Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~ 74 (83) +-.-.--.+.|..++|+.+|||++++..+..++...-...+......+. T Consensus 13 l~~~~G~~~~ti~~Ia~~agvs~~~~y~~F~~K~~L~~~~~~~~~~~~~ 61 (72) T d1vi0a1 13 VIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFI 61 (72) T ss_dssp HHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 9998590415599999987949879988883999999999999999999 No 77 >d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=77.13 E-value=0.71 Score=23.33 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=28.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH------------CCC-CCCCHHHHHHHHHH Q ss_conf 39949999998634299998875------------589-99448999999999 Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELE------------TGK-STINIDNMIILAHT 72 (83) Q Consensus 33 ~gltq~ela~~~gis~~~is~iE------------~G~-~~~~~~~l~~la~a 72 (83) ..+||+|+|+.+|+++.+++++- +|. ...+.+.|..+++. T Consensus 28 i~lt~~elA~~lg~sr~tv~r~L~~l~~~gli~~~~~~i~I~d~~~L~~~a~~ 80 (82) T d2zcwa1 28 LKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLLDLKGLKELAES 80 (82) T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHTS T ss_pred ECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHHHH T ss_conf 05899999999898899999999999989988964999998489999999874 No 78 >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Probab=76.87 E-value=1 Score=22.39 Aligned_cols=30 Identities=17% Similarity=0.452 Sum_probs=25.4 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 999999998399499999986342999988 Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISE 53 (83) Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~ 53 (83) .-|..+.....+|..++|+.+|+|.+++++ T Consensus 9 ~IL~~L~~n~r~s~~~iA~~lgis~~tv~~ 38 (63) T d2cfxa1 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTE 38 (63) T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999999983999999999998968789999 No 79 >d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]} Probab=76.40 E-value=0.72 Score=23.29 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=26.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCC-CCC-----------CHHH-----HHHHHHHHCCCHHHH Q ss_conf 949999998634299998875589-994-----------4899-----999999928999996 Q gi|254781147|r 35 LTQKEIRNRTGFAQSWISELETGK-STI-----------NIDN-----MIILAHTLDTPLWKL 80 (83) Q Consensus 35 ltq~ela~~~gis~~~is~iE~G~-~~~-----------~~~~-----l~~la~al~i~~~~l 80 (83) |+..|+|+.+|||.++|.-||+-. -.| +... +.+.++.+|+++.+. T Consensus 1 m~Ige~A~~~gvs~~TlR~Ye~~GLl~p~~r~~~gyR~Y~~~~i~~l~~I~~lr~~G~sl~eI 63 (127) T d1q06a_ 1 MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNLEES 63 (127) T ss_dssp CCHHHHHHHHTCCHHHHHHHHHTTCSCCCEECTTSCEECCHHHHHHHHHHHHHHHTTCCHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 978999999892999999999927988876577676145199999999999999869999999 No 80 >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} Probab=76.27 E-value=1.2 Score=21.92 Aligned_cols=30 Identities=17% Similarity=0.105 Sum_probs=25.8 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999983994999999863429999887 Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) -|..+-+.-++|+.++|+.+|+++++++++ T Consensus 37 iL~~l~~~~~~t~~~La~~l~i~~~~vs~~ 66 (140) T d2etha1 37 AFLYVALFGPKKMKEIAEFLSTTKSNVTNV 66 (140) T ss_dssp HHHHHHHHCCBCHHHHHHHTTSCHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 999999869959999999989698799999 No 81 >d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]} Probab=76.26 E-value=0.54 Score=24.02 Aligned_cols=53 Identities=8% Similarity=0.087 Sum_probs=36.9 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC Q ss_conf 99999999998399499999986342999988755899944899999999928 Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 (83) Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~ 74 (83) +-.-+.-+...-++|..++|+.+|++++++..+..++...-...+..+..-++ T Consensus 7 l~aa~~l~~~~G~~ti~~Ia~~agvs~~~iY~~F~~K~~L~~~v~~~~~~~~~ 59 (65) T d2g7ga1 7 AEAALELVDRDGDFRMPDLARHLNVQVSSIYHHAKGRAAVVELVRHRVVREID 59 (65) T ss_dssp HHHHHHHHHHHSSCCHHHHHHHTTSCHHHHHTTSCHHHHHHHHHHHHHHTTCC T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf 99999999786797899999885706131311589999999999999999988 No 82 >d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=76.25 E-value=2.1 Score=20.50 Aligned_cols=32 Identities=6% Similarity=0.101 Sum_probs=25.7 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999999983994999999863429999887 Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) +-.+|-.+ .+.|++..++|+..|||.+++++| T Consensus 21 lR~rIv~~-~~~G~s~r~iA~~~~VS~~tV~k~ 52 (123) T d1pdnc_ 21 IRLKIVEM-AADGIRPCVISRQLRVSHGCVSKI 52 (123) T ss_dssp HHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHH-HHHCCCHHHHHHHHCCCHHHHHHH T ss_conf 99999999-980489999999989699999999 No 83 >d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]} Probab=75.91 E-value=0.64 Score=23.57 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=37.6 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 999999999839949999998634299998875589994489999999992 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83) +..+-.-.--.++|..++|+.+|+|.+++..+..++-..-...+....+.+ T Consensus 14 a~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~~~~~~~ 64 (75) T d2hyja1 14 AAEIASEEGLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLDKAFVDF 64 (75) T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 999999759030769999998890989998888299999999999999999 No 84 >d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]} Probab=75.73 E-value=0.7 Score=23.36 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=29.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCC------------CCCCCHHH-----HHHHHHHHCCCHHHH Q ss_conf 994999999863429999887558------------99944899-----999999928999996 Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISELETG------------KSTINIDN-----MIILAHTLDTPLWKL 80 (83) Q Consensus 34 gltq~ela~~~gis~~~is~iE~G------------~~~~~~~~-----l~~la~al~i~~~~l 80 (83) .+|..|+|+.+|+|.++|.-||.- -+.-+.+. ..+.++.+|+|+.+. T Consensus 2 ~ytI~e~A~~~gvs~~tlR~Ye~~GLl~p~~r~~~gyR~Y~~~~~~~l~~I~~lr~~G~sl~eI 65 (109) T d1r8da_ 2 KYQVKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEI 65 (109) T ss_dssp CBCHHHHHHHHSCCHHHHHHHHHTTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 6229999999896999999998868958765577650456299999999999999869999999 No 85 >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} Probab=75.31 E-value=0.73 Score=23.25 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=24.7 Q ss_pred HHHHHHHHH------HCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999999------83994999999863429999887 Q gi|254781147|r 23 VNNFRNIRK------EAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 23 g~~ir~~R~------~~gltq~ela~~~gis~~~is~i 54 (83) ..-|+.++. ..++|+.++|+.+|+++++++++ T Consensus 4 ~~~l~~l~~~~~~~~~~~lt~~eLa~~l~i~~~~vs~~ 41 (85) T d3ctaa1 4 YRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRI 41 (85) T ss_dssp HHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 99999999826015899988999999988788789999 No 86 >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Probab=74.30 E-value=1.1 Score=22.31 Aligned_cols=30 Identities=7% Similarity=0.087 Sum_probs=25.2 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999983994999999863429999887 Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) -|..+....|+|+.++|+.++++.++++++ T Consensus 34 iL~~i~~~~~~t~~~la~~l~i~~~tvs~~ 63 (144) T d1lj9a_ 34 YLVRVCENPGIIQEKIAELIKVDRTTAARA 63 (144) T ss_dssp HHHHHHHSTTEEHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 999998289989999999878247169999 No 87 >d2ao9a1 a.4.1.17 (A:13-132) Phage protein BC1890 {Bacillus cereus [TaxId: 1396]} Probab=74.22 E-value=0.88 Score=22.77 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 399499999986342999988755 Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELET 56 (83) Q Consensus 33 ~gltq~ela~~~gis~~~is~iE~ 56 (83) -.-||+++|+-+|||+.++.+|-+ T Consensus 35 ekktqeqiAeelGisr~tLyrWrt 58 (120) T d2ao9a1 35 EKRTQDEMANELGINRTTLWEWRT 58 (120) T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHHHCHHHHHHHHHHH T ss_conf 341499999995801888988760 No 88 >d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]} Probab=74.20 E-value=1.2 Score=22.03 Aligned_cols=49 Identities=10% Similarity=0.109 Sum_probs=34.9 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC Q ss_conf 9999998399499999986342999988755899944899999999928 Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 (83) Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~ 74 (83) +-.-.--.++|..++|+.+|||++++..+..++...-...+..+.+-+. T Consensus 15 l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~ 63 (73) T d1t56a1 15 LLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQAD 63 (73) T ss_dssp HHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 9997591507799999986988889988884999999999999999999 No 89 >d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]} Probab=74.11 E-value=1.5 Score=21.42 Aligned_cols=48 Identities=8% Similarity=-0.139 Sum_probs=34.9 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH Q ss_conf 999999999839949999998634299998875589994489999999 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la 70 (83) +..+-.-.--.++|..++|+.+|+|++++..+..++...-...+.... T Consensus 11 a~~l~~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~~K~~l~~~~~~~~~ 58 (68) T d2d6ya1 11 AVAEFARHGIAGARIDRIAAEARANKQLIYAYYGNKGELFASVLEKKM 58 (68) T ss_dssp HHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999859250679999988784662898887499999999999999 No 90 >d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]} Probab=73.91 E-value=1.6 Score=21.18 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=30.7 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHC Q ss_conf 83994999999863429999887558-----99944899999999928 Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETG-----KSTINIDNMIILAHTLD 74 (83) Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G-----~~~~~~~~l~~la~al~ 74 (83) ...+|+.++|+.+|||+..+.+||+. +.......|..+.+.++ T Consensus 36 ~~~~tl~eI~~~lgiSrERVRQie~~al~kLr~~~~~~~L~~~l~~~~ 83 (87) T d1ttya_ 36 GKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSLMD 83 (87) T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHHHHHHHTT T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC T ss_conf 996889999999598899999999999999867377899999998631 No 91 >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} Probab=73.49 E-value=0.9 Score=22.70 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=25.7 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999983994999999863429999887 Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) -|..+....++|+.++|+.+|+++++++++ T Consensus 38 vL~~l~~~~~~t~~~La~~~~i~~~~vsr~ 67 (137) T d1z91a1 38 ALLLLWEHETLTVKKMGEQLYLDSGTLTPM 67 (137) T ss_dssp HHHHHHHHSEEEHHHHHHTTTCCHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 999987589998999999979688889799 No 92 >d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} Probab=73.48 E-value=1 Score=22.34 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=24.3 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999983994999999863429999887 Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) |..+-...|+|+.++|+.++++.+++|++ T Consensus 42 L~~l~~~~~~t~~~la~~l~~~~~~vsr~ 70 (141) T d1lnwa_ 42 LKLIDEQRGLNLQDLGRQMCRDKALITRK 70 (141) T ss_dssp HHHHHSSTTCBHHHHHHHTTCCHHHHHHH T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 99999879989999999978457379999 No 93 >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=72.99 E-value=1.7 Score=21.05 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=24.5 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999998399499999986342999988 Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISE 53 (83) Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~ 53 (83) -|..+.+.-.+|..++|+.+|+|.+++.+ T Consensus 8 Il~~L~~n~r~s~~~lA~~~gls~~~v~~ 36 (60) T d1i1ga1 8 ILEILEKDARTPFTEIAKKLGISETAVRK 36 (60) T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHH T ss_conf 99999884999999999998929999999 No 94 >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} Probab=72.86 E-value=2.2 Score=20.44 Aligned_cols=29 Identities=10% Similarity=0.231 Sum_probs=22.6 Q ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999998--3994999999863429999887 Q gi|254781147|r 26 FRNIRKE--AKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 26 ir~~R~~--~gltq~ela~~~gis~~~is~i 54 (83) |..+... .++|+.++|+.+|++.++++++ T Consensus 35 L~~l~~~~~~~it~~ela~~~~~~~~~vs~~ 65 (135) T d3broa1 35 IDYLSRNKNKEVLQRDLESEFSIKSSTATVL 65 (135) T ss_dssp HHHHHHTTTSCCBHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999970799999999999989688689999 No 95 >d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Probab=72.59 E-value=1.7 Score=21.02 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=25.2 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999998399499999986342999988 Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISE 53 (83) Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~ 53 (83) -|..+...-.+|..++|+.+|+|.+++.. T Consensus 10 IL~~L~~~~r~s~~eiA~~l~ls~~~v~~ 38 (63) T d2cg4a1 10 ILEALMGNARTAYAELAKQFGVSPETIHV 38 (63) T ss_dssp HHHHHHHCTTSCHHHHHHHHTSCHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHH T ss_conf 99999983899999999998939999999 No 96 >d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} Probab=71.84 E-value=1.5 Score=21.44 Aligned_cols=30 Identities=10% Similarity=-0.158 Sum_probs=25.0 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999983994999999863429999887 Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) -|..+....++|+.++|+.++++.++++++ T Consensus 46 vL~~l~~~~~~t~~~la~~~~l~~~tvs~~ 75 (162) T d2fxaa1 46 ILWIAYQLNGASISEIAKFGVMHVSTAFNF 75 (162) T ss_dssp HHHHHHHHTSEEHHHHHHHTTCCHHHHHHH T ss_pred HHHHHCCCCCCCHHHHHHHHCCCCHHHHHH T ss_conf 996521189918999999976994031998 No 97 >d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]} Probab=71.77 E-value=1.5 Score=21.34 Aligned_cols=49 Identities=10% Similarity=-0.053 Sum_probs=35.2 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 9999999998399499999986342999988755899944899999999 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83) +..+-.-+--.++|..++|+.+|||.+++..+..++-..-...+..... T Consensus 10 a~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~~F~~K~~L~~~~~~~~~~ 58 (71) T d1jt6a1 10 AKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEES 58 (71) T ss_dssp HHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHHSSHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 9999998591406799999987858759988884999999999999999 No 98 >d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]} Probab=71.54 E-value=3.1 Score=19.49 Aligned_cols=45 Identities=7% Similarity=-0.011 Sum_probs=31.8 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH Q ss_conf 999999839949999998634299998875589994489999999 Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 (83) Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la 70 (83) +-.-.--.+.|..++|+.+|||++++..+...+...=...+..+. T Consensus 14 l~~~~G~~~~ti~~Ia~~agvs~~~ly~~F~~K~~L~~~~~~~~~ 58 (72) T d2g3ba1 14 AIAQRGIRGLRVNDVAEVAGVSPGLLYYHFKDRIGLLEAALNYIN 58 (72) T ss_dssp HHHHHHHHHCCHHHHHHHHTSCHHHHHHHHCSHHHHHHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999839240779999988596977999888399999999999999 No 99 >d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]} Probab=71.18 E-value=2.6 Score=20.02 Aligned_cols=51 Identities=10% Similarity=0.056 Sum_probs=36.7 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 999999999839949999998634299998875589994489999999992 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83) +..+-.-+--.++|..++|+.+|||.+++.++..++...-...+....+.+ T Consensus 18 a~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~~k~~L~~~~~~~~~~~~ 68 (79) T d2oi8a1 18 AWEQIATAGASALSLNAIAKRMGMSGPALYRYFDGRDELITELIRDAYRSQ 68 (79) T ss_dssp HHHHHHHHCTTSCCHHHHHHHTTCCHHHHHTTCSSHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 999999869030679999998679977445516999999999999999999 No 100 >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} Probab=70.98 E-value=2 Score=20.60 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=25.1 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999983994999999863429999887 Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) -+..+....++|+.++|+.++++.++++++ T Consensus 39 vL~~l~~~~~~t~~ela~~~~i~~~~vs~~ 68 (138) T d1jgsa_ 39 VLCSIRCAACITPVELKKVLSVDLGALTRM 68 (138) T ss_dssp HHHHHHHHSSBCHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 988687180989999999978788579999 No 101 >d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]} Probab=70.74 E-value=0.94 Score=22.59 Aligned_cols=46 Identities=9% Similarity=-0.012 Sum_probs=33.0 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 9999998399499999986342999988755899944899999999 Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83) Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83) +-.-.--.++|..++|+.+|||++++..+..++...-...+....+ T Consensus 23 l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~ 68 (81) T d1rkta1 23 VFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIETGLD 68 (81) T ss_dssp HHHHHCSTTCCHHHHHHHHTSCHHHHHTTCSCHHHHHHHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 9998592517799999986949889988884999999999999999 No 102 >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} Probab=70.47 E-value=1.5 Score=21.45 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=25.7 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999999983994999999863429999887 Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) .-|..+....+.|+.++|+.+++++++++++ T Consensus 39 ~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~ 69 (143) T d1s3ja_ 39 FVLASLKKHGSLKVSEIAERMEVKPSAVTLM 69 (143) T ss_dssp HHHHHHHHHSEEEHHHHHHHHTSCHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999999779989999999989698899999 No 103 >d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]} Probab=70.06 E-value=0.94 Score=22.59 Aligned_cols=47 Identities=11% Similarity=0.032 Sum_probs=30.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCC-CCCC-----------------HHHHHHHHHHHCCCHHHH Q ss_conf 9949999998634299998875589-9944-----------------899999999928999996 Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISELETGK-STIN-----------------IDNMIILAHTLDTPLWKL 80 (83) Q Consensus 34 gltq~ela~~~gis~~~is~iE~G~-~~~~-----------------~~~l~~la~al~i~~~~l 80 (83) -+|..|+|+.+|||..+|.-||+-. -.|. .-...+.++.+|+|+.+. T Consensus 3 yytI~evA~~~gvs~~tlR~Ye~~GLl~P~~~r~~~gyR~Y~~~~l~~l~~I~~lr~~g~sl~eI 67 (118) T d1r8ea1 3 YYSIGEVSKLANVSIKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEM 67 (118) T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHTTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTTCCHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 60199999998969999999998588553453699994035488999999999999969999999 No 104 >d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]} Probab=69.91 E-value=0.81 Score=22.99 Aligned_cols=50 Identities=14% Similarity=-0.013 Sum_probs=35.5 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 99999999839949999998634299998875589994489999999992 Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83) Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83) ..+-.-.--.++|..++|+.+|+|++++.++..++...=...+....+-+ T Consensus 10 ~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 59 (70) T d2gena1 10 LACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLAGIGQY 59 (70) T ss_dssp HHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCSHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 99999859240879999998795877999898799999999999999999 No 105 >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=69.90 E-value=2.1 Score=20.55 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=25.1 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 999999998399499999986342999988 Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISE 53 (83) Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~ 53 (83) +-|..+.+.-.+|..++|+.+|+|.+++.. T Consensus 7 ~Il~~L~~n~r~s~~eiA~~l~ls~~~v~~ 36 (60) T d2cyya1 7 KIIKILQNDGKAPLREISKITGLAESTIHE 36 (60) T ss_dssp HHHHHHHHCTTCCHHHHHHHHCSCHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999999982899999999998939999999 No 106 >d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]} Probab=69.86 E-value=1.1 Score=22.17 Aligned_cols=44 Identities=16% Similarity=0.076 Sum_probs=31.4 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH Q ss_conf 99999839949999998634299998875589994489999999 Q gi|254781147|r 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 (83) Q Consensus 27 r~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la 70 (83) -.-.--.++|..++|+.+|+|++++..+..++...=...+..+. T Consensus 19 ~~~~G~~~~t~~~Ia~~agvs~~~iY~~F~~k~~L~~~~~~~~~ 62 (68) T d2id3a1 19 LAADGFDALDLGEIARRAGVGKTTVYRRWGTPGGLAADLLADMA 62 (68) T ss_dssp HHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHH T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99849340779999999786887999998599999999999999 No 107 >d1d1la_ a.35.1.2 (A:) cro lambda repressor {Bacteriophage lambda [TaxId: 10710]} Probab=69.04 E-value=1.7 Score=21.13 Aligned_cols=34 Identities=18% Similarity=0.091 Sum_probs=27.2 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 999998399499999986342999988755899944 Q gi|254781147|r 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 (83) Q Consensus 27 r~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~ 62 (83) ..+-.+.| |...|+.+|+.++.||+.-+..+++. T Consensus 8 ~dyv~~~G--QaKaA~~LGv~Q~AIsKAira~R~I~ 41 (61) T d1d1la_ 8 KDYAMRFG--QTKTAKDLGVYQSAINKAIHAGRKIF 41 (61) T ss_dssp HHHHHHHC--HHHHHHHHTCCTHHHHHHHHTTCCEE T ss_pred HHHHHHHC--HHHHHHHCCCCHHHHHHHHHCCCEEE T ss_conf 99999977--59899982964889999996388279 No 108 >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} Probab=68.14 E-value=2 Score=20.67 Aligned_cols=30 Identities=10% Similarity=0.280 Sum_probs=25.1 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999983994999999863429999887 Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) -|..+...-++|+.++|+.+|++.++++++ T Consensus 35 vL~~l~~~~~~t~~~la~~~~i~~~~vs~~ 64 (136) T d2fbia1 35 VIRILRQQGEMESYQLANQACILRPSMTGV 64 (136) T ss_dssp HHHHHHHHCSEEHHHHHHHTTCCHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 999999769989999999988789889999 No 109 >d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]} Probab=67.82 E-value=1.6 Score=21.22 Aligned_cols=30 Identities=7% Similarity=0.132 Sum_probs=26.8 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 999999998399499999986342999988 Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISE 53 (83) Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~ 53 (83) .-|+..-+..+..+.+.|+.+||+++++.+ T Consensus 54 ~lI~~aL~~~~Gn~~~AA~~LGI~R~TL~~ 83 (91) T d1ntca_ 54 TLLTTALRHTQGHKQEAARLLGWGAATLTA 83 (91) T ss_dssp HHHHHHHHHTTTCTTHHHHHTTCCHHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHH T ss_conf 999999999599599999997988999999 No 110 >d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]} Probab=67.41 E-value=2.4 Score=20.22 Aligned_cols=46 Identities=13% Similarity=0.028 Sum_probs=32.8 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH Q ss_conf 9999999998399499999986342999988755899944899999 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~ 68 (83) +..+-.-.--.++|..++|+.+|+|.+++..+..++...-...+.. T Consensus 8 A~~l~~~~G~~~~s~~~Ia~~agvs~~tiy~~F~~K~~L~~~~~~~ 53 (62) T d2vkva1 8 ALELGNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNKRALLDALAVE 53 (62) T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHSCCHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH T ss_conf 9999998393517899999880988889998887999999999999 No 111 >d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Probab=67.37 E-value=2.6 Score=19.93 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=30.9 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC Q ss_conf 983994999999863429999887558999448999999999289999960 Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83) Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83) .....|+.|+|+.+|+|..++++. ...+.+.|++++.++| T Consensus 59 ~~~~~t~~eIa~~~~is~~ti~k~-----------yk~i~~~L~l~~~~~~ 98 (98) T d1aisb1 59 LKVPRTLDEIADIARVDKKEIGRS-----------YRFIARNLNLTPKKLF 98 (98) T ss_dssp HTCCCCHHHHHHHTTSCHHHHHHH-----------HHHHHHHTTCCTTTTC T ss_pred CCCCCCHHHHHHHHCCCHHHHHHH-----------HHHHHHHCCCCCCCCC T ss_conf 399988999999979889999999-----------9999998198810059 No 112 >d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]} Probab=66.97 E-value=3.8 Score=19.01 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=31.2 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 99999999983994999999863429999887558999448999 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l 66 (83) +..+-.-+--.+.|..++|+++|+|++++.++..++...-...+ T Consensus 13 a~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~~k~~L~~~~~ 56 (69) T d2fq4a1 13 SYELLLESGFKAVTVDKIAERAKVSKATIYKWWPNKAAVVMDGF 56 (69) T ss_dssp HHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH T ss_conf 99999983924077999999978588799999879999999999 No 113 >d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} Probab=66.60 E-value=2.6 Score=19.96 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=23.0 Q ss_pred HHHHHHH-CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999998-3994999999863429999887 Q gi|254781147|r 26 FRNIRKE-AKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 26 ir~~R~~-~gltq~ela~~~gis~~~is~i 54 (83) |..+... .++|+.++|+.+++++++++++ T Consensus 34 L~~l~~~~~~~t~~~la~~~~~~~~~vs~~ 63 (137) T d2fbha1 34 LLHLARHRDSPTQRELAQSVGVEGPTLARL 63 (137) T ss_dssp HHHHHHCSSCCBHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 999987699976999999989789899999 No 114 >d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]} Probab=66.45 E-value=0.63 Score=23.63 Aligned_cols=45 Identities=4% Similarity=-0.070 Sum_probs=34.0 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 999999999839949999998634299998875589994489999 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~ 67 (83) +..+-.-+--.+.|..++|+.+|+|++++..+..++...-...+. T Consensus 9 A~~lf~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~ 53 (69) T d2i10a1 9 AMELFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDLFEKTLD 53 (69) T ss_dssp HHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH T ss_conf 999999879062779999998687862998888599999999999 No 115 >d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]} Probab=66.33 E-value=0.99 Score=22.46 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=27.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH Q ss_conf 39949999998634299998875589994489999999 Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 (83) Q Consensus 33 ~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la 70 (83) .-+.|..+|+.+||+.+.||++.+|- -|.++.+..+. T Consensus 19 A~~Gq~k~A~amGv~esqiSRwK~~f-~~q~smlLAvL 55 (78) T d1zs4a1 19 AMLGTEKTAEAVGVDKSQISRWKRDW-IPKFSMLLAVL 55 (78) T ss_dssp HHHCHHHHHHHHTSCHHHHHHHHHHT-HHHHHHHHHHH T ss_pred HHHCCHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHHHH T ss_conf 99720468999399899998998706-88999999999 No 116 >d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]} Probab=66.33 E-value=4.1 Score=18.79 Aligned_cols=45 Identities=13% Similarity=0.040 Sum_probs=32.3 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 999999999839949999998634299998875589994489999 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~ 67 (83) +..+-.-.--.+.|..++|+.+|||++++.++..++...-...+. T Consensus 13 a~~l~~~~G~~~~si~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~ 57 (73) T d2fx0a1 13 AKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFK 57 (73) T ss_dssp HHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHHTSHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH T ss_conf 999999869351769999998784864999888499999999999 No 117 >d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]} Probab=65.85 E-value=1.7 Score=21.08 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=32.4 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH Q ss_conf 9999999998399499999986342999988755899944899999 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~ 68 (83) +..+-.-.--.+.|..++|+.+|+|.+++..+...+...-...+.. T Consensus 14 a~~l~~~~G~~~~si~~Ia~~agvs~~~~y~~F~sK~~L~~~~~~~ 59 (71) T d1ui5a1 14 AADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEI 59 (71) T ss_dssp HHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH T ss_conf 9999998594626799999987948769998982999999999999 No 118 >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=65.61 E-value=1.3 Score=21.71 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=22.2 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9983994999999863429999887 Q gi|254781147|r 30 RKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 30 R~~~gltq~ela~~~gis~~~is~i 54 (83) +...++|..|+|+.+|++++++.++ T Consensus 16 ~~~~~~s~~eia~~~~~~~st~~rl 40 (75) T d1mkma1 16 KNPGDVSVSEIAEKFNMSVSNAYKY 40 (75) T ss_dssp HCSSCBCHHHHHHHTTCCHHHHHHH T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 5799989999999979199999999 No 119 >d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]} Probab=65.59 E-value=1.5 Score=21.34 Aligned_cols=49 Identities=8% Similarity=0.047 Sum_probs=35.2 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 9999999998399499999986342999988755899944899999999 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83) +..+-.-+--.++|..++|+++|+|.+++..+..++...-...+....+ T Consensus 12 a~~l~~~~G~~~~t~~~Ia~~agvs~~slY~yF~~k~~L~~~~~~~~~~ 60 (72) T d1zk8a1 12 AAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNLGIYGIK 60 (72) T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 9999998697756699999995979999989883999999999999999 No 120 >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} Probab=65.09 E-value=3.2 Score=19.43 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=22.5 Q ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999983-994999999863429999887 Q gi|254781147|r 26 FRNIRKEA-KLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 26 ir~~R~~~-gltq~ela~~~gis~~~is~i 54 (83) |..+-... ++|+.++|+.+|++.++++++ T Consensus 40 L~~L~~~~g~~t~~~La~~~~~~~~~vs~~ 69 (145) T d2hr3a1 40 LGAIDRLGGDVTPSELAAAERMRSSNLAAL 69 (145) T ss_dssp HHHHHHTTSCBCHHHHHHHTTCCHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 999998599979999999979898899999 No 121 >d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]} Probab=64.75 E-value=0.58 Score=23.83 Aligned_cols=47 Identities=6% Similarity=0.028 Sum_probs=32.6 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH Q ss_conf 99999999983994999999863429999887558999448999999 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~l 69 (83) +..+-.-.--.++|..++|+.+|+|++++..+..++...-...+..+ T Consensus 13 a~~l~~~~g~~~~si~~ia~~~gvs~~~~y~hF~~K~~L~~~~~~~~ 59 (68) T d2g7la1 13 AVALMRAEGLEKVTMRRLAQELDTGPASLYVYVANTAELHAAVLDAL 59 (68) T ss_dssp HHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCCSHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999984903078999999978287676287759999999999999 No 122 >d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]} Probab=64.06 E-value=1.7 Score=21.02 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=34.0 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 999999839949999998634299998875589994489999999992 Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83) Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83) +-.-+--.++|..++|+.+|+|++++..+...+...-...+....+-+ T Consensus 13 l~~~~G~~~~ti~~Ia~~agvs~~~iy~~F~sK~~L~~~~~~~~~~~~ 60 (69) T d2np5a1 13 VAAESGLEGASVREVAKRAGVSIGAVQHHFSTKDEMFAFALRTLVDKL 60 (69) T ss_dssp HHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 999849140679999988398887998888399999999999999999 No 123 >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=63.68 E-value=1.8 Score=20.98 Aligned_cols=23 Identities=17% Similarity=0.175 Sum_probs=20.4 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 83994999999863429999887 Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 32 ~~gltq~ela~~~gis~~~is~i 54 (83) ...+|+.|+|+.+|+|++++|+. T Consensus 39 ~~plt~~ela~~l~vsk~~vs~~ 61 (151) T d1ku9a_ 39 DKPLTISDIMEELKISKGNVSMS 61 (151) T ss_dssp SSCEEHHHHHHHHTCCHHHHHHH T ss_pred CCCCCHHHHHHHHCCCCCHHHHH T ss_conf 98928999999867770249999 No 124 >d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]} Probab=62.65 E-value=1.1 Score=22.13 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=23.8 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9839949999998634299998875589 Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELETGK 58 (83) Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~G~ 58 (83) ....+|.+++|+.+|+|+++++++.+.. T Consensus 16 ~~~~~tl~~lA~~~~~s~~~l~r~Fk~~ 43 (54) T d1bl0a1 16 LESPLSLEKVSERSGYSKWHLQRMFKKE 43 (54) T ss_dssp TTSCCCCHHHHHHSSSCHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 4799999999999893999999999999 No 125 >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} Probab=62.20 E-value=0.99 Score=22.47 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=25.7 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999999983994999999863429999887 Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) .-+..+....|+|+.++|+.+|++.++++++ T Consensus 38 ~vL~~i~~~~~~t~~~la~~l~~~~~~~s~~ 68 (136) T d2bv6a1 38 LVLTILWDESPVNVKKVVTELALDTGTVSPL 68 (136) T ss_dssp HHHHHHHHSSEEEHHHHHHHTTCCTTTHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999997289979999999979788379999 No 126 >d1rzsa_ a.35.1.2 (A:) cro p22 {Bacteriophage p22 [TaxId: 10754]} Probab=62.11 E-value=2.2 Score=20.46 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=23.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH Q ss_conf 49999998634299998875589994489999999 Q gi|254781147|r 36 TQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 (83) Q Consensus 36 tq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la 70 (83) ++..+|+.+|||.+.||+| |.--|-. ...+|. T Consensus 12 ~~~k~A~algis~~AVsqW--Ge~VPe~-RA~~ie 43 (61) T d1rzsa_ 12 TQRAVAKALGISDAAVSQW--KEVIPEK-DAYRLE 43 (61) T ss_dssp SHHHHHHHHTCCHHHHHHC--CSBCCHH-HHHHHH T ss_pred CHHHHHHHHCCCHHHHHHH--HCCCCHH-HHHHHH T ss_conf 7999999969989999988--6307698-999999 No 127 >d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]} Probab=61.15 E-value=5.1 Score=18.21 Aligned_cols=40 Identities=15% Similarity=0.043 Sum_probs=30.0 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 8399499999986342999988755899944899999999 Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 (83) Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~ 71 (83) -.++|..++|+.+|||++++..+..++...=...+..+.. T Consensus 23 ~~~~t~~~Ia~~agvs~~~~y~~F~~k~~L~~~~~~~~~~ 62 (75) T d3c07a1 23 YDRTTMRAIAQEAGVSVGNAYYYFAGKEHLIQGFYDRIAA 62 (75) T ss_dssp STTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 1407799999987939879998985999999999999999 No 128 >d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} Probab=59.08 E-value=3.2 Score=19.45 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=23.6 Q ss_pred HHHHHHH-HCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999999-83994999999863429999887 Q gi|254781147|r 25 NFRNIRK-EAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 25 ~ir~~R~-~~gltq~ela~~~gis~~~is~i 54 (83) -|..+.. ..++|+.++|+.+++++++++++ T Consensus 36 ~L~~l~~~~~~~t~~~la~~l~i~~~~vs~~ 66 (140) T d3deua1 36 TLHNIHQLPPDQSQIQLAKAIGIEQPSLVRT 66 (140) T ss_dssp HHHHHHHSCSSEEHHHHHHHHTSCHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999987499956999999978777678899 No 129 >d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]} Probab=58.90 E-value=3.2 Score=19.46 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=22.2 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 98399499999986342999988755 Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELET 56 (83) Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~ 56 (83) ...|+|..++|+.+|+|..++..+-+ T Consensus 18 l~~G~s~~eIA~~l~iS~~TV~~~~~ 43 (67) T d1a04a1 18 IAQGLPNKMIARRLDITESTVKVHVK 43 (67) T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99679989999997888889999999 No 130 >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=58.53 E-value=3.1 Score=19.52 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=24.3 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999983994999999863429999887 Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) +..+-..-.+|..|+|+.+|++++++++. T Consensus 22 L~~L~~~~~~~~~eLa~~l~is~~~vs~~ 50 (100) T d1ub9a_ 22 MIFLLPRRKAPFSQIQKVLDLTPGNLDSH 50 (100) T ss_dssp HHHHHHHSEEEHHHHHHHTTCCHHHHHHH T ss_pred HHHHCCCCCEEHHHHHHHHHHCCCCCCHH T ss_conf 98760479901999999986254323099 No 131 >d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]} Probab=58.53 E-value=1.9 Score=20.73 Aligned_cols=51 Identities=10% Similarity=0.017 Sum_probs=35.8 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 999999999839949999998634299998875589994489999999992 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83) +..+-.-.--.+.|..++|+.+|||.+++..+..++...-...+......+ T Consensus 16 a~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~~Ke~L~~~~~~~~~~~~ 66 (76) T d2fd5a1 16 ATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKR 66 (76) T ss_dssp HHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCSCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 999999849130569999998389955004208999999999999999999 No 132 >d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=58.38 E-value=1.1 Score=22.09 Aligned_cols=27 Identities=7% Similarity=0.294 Sum_probs=23.2 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 839949999998634299998875589 Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETGK 58 (83) Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G~ 58 (83) ...+|.+++|+.+|+|+++++++.... T Consensus 17 ~~~itl~~lA~~~~~S~~~l~r~Fk~~ 43 (54) T d1d5ya1 17 DQPLSLDNVAAKAGYSKWHLQRMFKDV 43 (54) T ss_dssp SSSCCCHHHHTTTSSCHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 899999999999892999999999999 No 133 >d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} Probab=58.05 E-value=3.9 Score=18.95 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=21.9 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999983994999999863429999887 Q gi|254781147|r 28 NIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 28 ~~R~~~gltq~ela~~~gis~~~is~i 54 (83) .+-....+|..|+++.+|++++++|.- T Consensus 39 ~L~~~~~~~v~ela~~l~~s~s~vS~H 65 (108) T d1u2wa1 39 ALCQDEELCVCDIANILGVTIANASHH 65 (108) T ss_dssp HHHHSSCEEHHHHHHHHTCCHHHHHHH T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 998689914999998885572579999 No 134 >d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=57.59 E-value=3.2 Score=19.42 Aligned_cols=37 Identities=8% Similarity=0.050 Sum_probs=28.9 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH Q ss_conf 8399499999986342999988755899944899999 Q gi|254781147|r 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 (83) Q Consensus 32 ~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~ 68 (83) --+.|..++|+.+|||.+++..+..++..+-...+.. T Consensus 18 G~~~t~~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~~ 54 (70) T d2hkua1 18 GEGVPITQICAAAGAHPNQVTYYYGSKERLFVEVACA 54 (70) T ss_dssp CTTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHH T ss_conf 3574499999887888536873089999999999999 No 135 >d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]} Probab=57.47 E-value=6 Score=17.83 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=29.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 39949999998634299998875589994489999999992 Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 (83) Q Consensus 33 ~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al 73 (83) .+ |..++|+.+|||.+++..+...+...-...+..+.+.+ T Consensus 31 ~~-t~~~Ia~~agvs~~~~Y~~F~sK~~L~~a~~~~~~~~~ 70 (88) T d1t33a1 31 HA-TTRDIAALAGQNIAAITYYFGSKEDLYLACAQWIADFL 70 (88) T ss_dssp GS-CHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHHHHHH T ss_pred CC-CHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHH T ss_conf 16-79999988399844310019899999999999999999 No 136 >d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} Probab=56.82 E-value=3.6 Score=19.13 Aligned_cols=28 Identities=18% Similarity=0.238 Sum_probs=21.3 Q ss_pred HHHHHHC--CCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999983--994999999863429999887 Q gi|254781147|r 27 RNIRKEA--KLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 27 r~~R~~~--gltq~ela~~~gis~~~is~i 54 (83) ..+.... ++|+.++|+.++++.++++++ T Consensus 40 ~~l~~~~~~~~t~~~la~~l~~~~~tvs~~ 69 (115) T d2frha1 40 TYISENKEKEYYLKDIINHLNYKQPQVVKA 69 (115) T ss_dssp HHHHHTCCSEEEHHHHHHHSSSHHHHHHHH T ss_pred HHHHCCCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 999808999988999999979788689999 No 137 >d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]} Probab=55.56 E-value=2.5 Score=20.08 Aligned_cols=23 Identities=13% Similarity=0.227 Sum_probs=19.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 99499999986342999988755 Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISELET 56 (83) Q Consensus 34 gltq~ela~~~gis~~~is~iE~ 56 (83) .++.+++|+..|+|..+|..+-+ T Consensus 2 ~Vnk~~lA~iFGVS~~TI~~W~~ 24 (68) T d1j9ia_ 2 EVNKKQLADIFGASIRTIQNWQE 24 (68) T ss_dssp EEEHHHHHHHTTCCHHHHHHHTT T ss_pred CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 46899999996998899999998 No 138 >d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} Probab=55.54 E-value=6.1 Score=17.77 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=21.9 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99983994999999863429999887 Q gi|254781147|r 29 IRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 29 ~R~~~gltq~ela~~~gis~~~is~i 54 (83) +-.+..++..|+++.+|+|++++|+- T Consensus 26 ~L~~~~~~v~el~~~l~~s~~~vS~H 51 (94) T d1r1ua_ 26 LLSVSEASVGHISHQLNLSQSNVSHQ 51 (94) T ss_dssp HHHHCCBCHHHHHHHHTCCHHHHHHH T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 99729956999999988787789999 No 139 >d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]} Probab=54.15 E-value=4.3 Score=18.68 Aligned_cols=26 Identities=15% Similarity=0.038 Sum_probs=22.5 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 98399499999986342999988755 Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELET 56 (83) Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~ 56 (83) ...|+|-+|+|+.+|+|.+++..+-+ T Consensus 16 ~~~G~s~~eIA~~L~is~~TV~~~~~ 41 (67) T d1fsea_ 16 LVQDKTTKEIASELFISEKTVRNHIS 41 (67) T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHH T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 98369899999998888889999999 No 140 >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} Probab=53.85 E-value=4.6 Score=18.49 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.1 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 983994999999863429999887 Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83) ....+|..|+|+.+|++++++|.- T Consensus 33 ~~~~~~v~ela~~l~is~stvS~H 56 (98) T d1r1ta_ 33 ARSELCVGDLAQAIGVSESAVSHQ 56 (98) T ss_dssp TTCCBCHHHHHHHHTCCHHHHHHH T ss_pred HCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 819967999999989298899999 No 141 >d1ngra_ a.77.1.2 (A:) p75 low affinity neurotrophin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=52.85 E-value=3.9 Score=18.93 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=31.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC Q ss_conf 994999999863429999887558999448999999999289999960 Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83) Q Consensus 34 gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83) |-.=+.||..+|++...|..|++. .+|+...|.....--+.++..|. T Consensus 21 g~dWr~LA~~LGl~~~~I~~i~~~-~spt~~lL~~W~~~~~~tl~~L~ 67 (85) T d1ngra_ 21 GDTWRHLAGELGYQPEHIDSFTHE-ACPVRALLASWGAQDSATLDALL 67 (85) T ss_dssp TTHHHHHHHHTTCCHHHHHHHHHS-SCHHHHHHHHGGGSTTCBHHHHH T ss_pred CCCHHHHHHHCCCCHHHHHHHHCC-CCHHHHHHHHHHHCCCCCHHHHH T ss_conf 787999998939799999898728-98699999999874898299999 No 142 >d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]} Probab=52.63 E-value=6.2 Score=17.75 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=20.9 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999983994999999863429999887 Q gi|254781147|r 26 FRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 26 ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) |...-.+.| +..+.|+.+||+++++.+= T Consensus 26 I~~aL~~~g-n~~~aA~~Lgisr~tL~rK 53 (61) T d1g2ha_ 26 LKLFYAEYP-STRKLAQRLGVSHTAIANK 53 (61) T ss_dssp HHHHHHHSC-SHHHHHHHTTSCTHHHHHH T ss_pred HHHHHHHCC-CHHHHHHHHCCCHHHHHHH T ss_conf 999999878-9999999979889999999 No 143 >d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage Mu [TaxId: 10677]} Probab=52.26 E-value=7.2 Score=17.34 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=26.2 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999983994999999863429999887558 Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 (83) Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G 57 (83) .+...++.-.|.+..+||.+-|+|..+|.+|=+. T Consensus 56 Rn~~I~~ef~G~n~~eLA~kY~lS~~~I~~Ii~~ 89 (94) T d1rr7a_ 56 RDLRIWNDFNGRNVSELTTRYGVTFNTVYKAIRR 89 (94) T ss_dssp HHHHHHHHCCSSCHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999908998999999989779999999999 No 144 >d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Probab=51.85 E-value=4.9 Score=18.36 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=22.0 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9839949999998634299998875 Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELE 55 (83) Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE 55 (83) ...|+|-.++|..+|+|.+++..+- T Consensus 24 l~~G~s~~eIA~~l~iS~~TV~~~~ 48 (70) T d1yioa1 24 TIRGLMNKQIAGELGIAEVTVKVHR 48 (70) T ss_dssp HTTTCCHHHHHHHHTCCHHHHHHHH T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9828999999989797999999999 No 145 >d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Probab=50.88 E-value=5.1 Score=18.22 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=22.4 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 998399499999986342999988755 Q gi|254781147|r 30 RKEAKLTQKEIRNRTGFAQSWISELET 56 (83) Q Consensus 30 R~~~gltq~ela~~~gis~~~is~iE~ 56 (83) ....|+|-+|+|+.+|+|.+++..+-+ T Consensus 15 l~~~G~s~~eIA~~l~iS~~TV~~~~~ 41 (65) T d1l3la1 15 WIAVGKTMEEIADVEGVKYNSVRVKLR 41 (65) T ss_dssp HHTTTCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999369888999997888999999999 No 146 >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Probab=50.80 E-value=3.1 Score=19.55 Aligned_cols=24 Identities=4% Similarity=-0.045 Sum_probs=20.0 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 983994999999863429999887 Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83) ...++|+.++|+.+|++.++++++ T Consensus 46 ~~~~~~~~~ia~~l~~~~~~vs~~ 69 (125) T d1p4xa2 46 NKNIVLLKDLIETIHHKYPQTVRA 69 (125) T ss_dssp TTCCEEHHHHHHHSSSCHHHHHHH T ss_pred CCCCCCHHHHHHHHCCCCCHHHHH T ss_conf 378836999999978984249999 No 147 >d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]} Probab=50.05 E-value=1.5 Score=21.44 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=31.9 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 999999983994999999863429999887558999448999 Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 (83) Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l 66 (83) .+-..+--.+.|..++|+.+|+|++++..+..++...-...+ T Consensus 7 ~l~~~~G~~~~s~~~IA~~agvs~~~ly~~F~sK~~L~~a~~ 48 (65) T d2np3a1 7 VCFAERGFDATSLRRIAETAGVDQSLVHHFYGTKENLFLQAL 48 (65) T ss_dssp HHC---------------------------CCC-CHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH T ss_conf 999987904077999999878688799988879999999999 No 148 >d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]} Probab=48.00 E-value=1.8 Score=20.97 Aligned_cols=38 Identities=3% Similarity=-0.073 Sum_probs=27.6 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 99839949999998634299998875589994489999 Q gi|254781147|r 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 (83) Q Consensus 30 R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~ 67 (83) +--.+.|..++|+.+|+|++++..+-.++...-...+. T Consensus 22 ~G~~~~sv~~Ia~~agvs~~t~Y~~F~~k~~l~~~~~~ 59 (71) T d2iu5a1 22 NAYHQISVSDIMQTAKIRRQTFYNYFQNQEELLSWIFE 59 (71) T ss_dssp SCGGGCCHHHHHHHHTSCGGGGGGTCSSHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHH T ss_conf 49640779999987571645897776799999999999 No 149 >d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]} Probab=47.40 E-value=7.3 Score=17.32 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=22.1 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999983994999999863429999887 Q gi|254781147|r 28 NIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 28 ~~R~~~gltq~ela~~~gis~~~is~i 54 (83) .+-.+..+|-.|+|+.+|+|++++++- T Consensus 26 ~~L~~~~~s~~ela~~lg~s~~~v~~h 52 (190) T d1ulya_ 26 KLLRNKEMTISQLSEILGKTPQTIYHH 52 (190) T ss_dssp HHHTTCCBCHHHHHHHHTCCHHHHHHH T ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHH T ss_conf 999819987999999989199999999 No 150 >d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]} Probab=46.58 E-value=5.6 Score=18.01 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=22.8 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 98399499999986342999988755 Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELET 56 (83) Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~ 56 (83) ..+|+|.+++.+.++|++=++.+|++ T Consensus 41 lr~G~sveeI~elTkID~WFL~qi~~ 66 (153) T d1a9xa1 41 FRAGLSVDGVFNLTNIDRWFLVQIEE 66 (153) T ss_dssp HHTTBCHHHHHHHHCCCHHHHHHHHH T ss_pred HHCCCCHHHHHHHHCEEEHHHHHHHH T ss_conf 98299999998861820099999999 No 151 >d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]} Probab=46.50 E-value=6.1 Score=17.79 Aligned_cols=47 Identities=11% Similarity=-0.040 Sum_probs=34.3 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHCC Q ss_conf 99983994999999863429999887558----999448999999999289 Q gi|254781147|r 29 IRKEAKLTQKEIRNRTGFAQSWISELETG----KSTINIDNMIILAHTLDT 75 (83) Q Consensus 29 ~R~~~gltq~ela~~~gis~~~is~iE~G----~~~~~~~~l~~la~al~i 75 (83) .....|++-+++|+.+++|.+++...-+. -.-.+...+...|...|+ T Consensus 32 ~ll~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Kl~~~~~~~lv~~a~~~gl 82 (87) T d1p4wa_ 32 RLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSM 82 (87) T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTC T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC T ss_conf 999928999999878697999999999999998499999999999999689 No 152 >d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]} Probab=45.71 E-value=2.6 Score=19.96 Aligned_cols=49 Identities=8% Similarity=0.150 Sum_probs=33.1 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHH Q ss_conf 99999999983994999999863429999887558-99944899999999 Q gi|254781147|r 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAH 71 (83) Q Consensus 23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G-~~~~~~~~l~~la~ 71 (83) +..+-.-.--.+.|..++|+.+|+|.+++..+..+ +...-...+....+ T Consensus 11 a~~l~~~~G~~~~si~~Ia~~agvs~~~iy~~F~~~Ke~L~~~~~~~~~~ 60 (73) T d1sgma1 11 ASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGK 60 (73) T ss_dssp HHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 99999984924177999999868887799998599899999999999999 No 153 >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} Probab=45.57 E-value=2.7 Score=19.86 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=20.4 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 983994999999863429999887 Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83) ...++|+.++|+.+|++.++++++ T Consensus 45 ~~~~~t~~ela~~l~~~~~~vs~~ 68 (115) T d1hsja1 45 ESNEISSKEIAKCSEFKPYYLTKA 68 (115) T ss_dssp SCSEEEHHHHHHSSCCCHHHHHHH T ss_pred CCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 899948999999978885359999 No 154 >d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} Probab=40.44 E-value=1.8 Score=20.86 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=10.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHH Q ss_conf 994999999863429999887 Q gi|254781147|r 34 KLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 34 gltq~ela~~~gis~~~is~i 54 (83) |+|+.++|+.+|+++++++++ T Consensus 79 ~lt~~eLa~~l~i~~~tvsr~ 99 (172) T d2fbka1 79 GLRPTELSALAAISGPSTSNR 99 (172) T ss_dssp CBCHHHHHHHCSCCSGGGSSH T ss_pred CCCHHHHHHHHCCCHHHHHHH T ss_conf 968999999978678579999 No 155 >d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Probab=40.37 E-value=8.7 Score=16.86 Aligned_cols=25 Identities=36% Similarity=0.304 Sum_probs=19.3 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9839949999998634299998875 Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELE 55 (83) Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE 55 (83) .....|++|+|+.+|++..+|.+.- T Consensus 58 ~~~~~t~~eIa~~~~vs~~tI~k~y 82 (109) T d1vola2 58 SAEKRTQKEIGDIAGVADVTIRQSY 82 (109) T ss_dssp SSSCCCHHHHHHHHTCCHHHHHHHH T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 1899899999999898999999999 No 156 >d1d2za_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]} Probab=39.90 E-value=11 Score=16.16 Aligned_cols=46 Identities=4% Similarity=0.104 Sum_probs=31.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHCCCHHHHC Q ss_conf 4999999863429999887558---999448999999999289999960 Q gi|254781147|r 36 TQKEIRNRTGFAQSWISELETG---KSTINIDNMIILAHTLDTPLWKLL 81 (83) Q Consensus 36 tq~ela~~~gis~~~is~iE~G---~~~~~~~~l~~la~al~i~~~~l~ 81 (83) .=+.||..+|++...|..+|.. ...|+...|.....--+.++.+|+ T Consensus 27 ~Wr~LA~~Lg~~~~~I~~i~~~~~~~~Spt~~lL~~W~~~~~~Tv~~L~ 75 (102) T d1d2za_ 27 VWQQLATAVKLYPDQVEQISSQKQRGRSASNEFLNIWGGQYNHTVQTLF 75 (102) T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCBHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHH T ss_conf 4999999949999999999863467997499999999836898199999 No 157 >d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Probab=34.76 E-value=13 Score=15.86 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=19.3 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 98399499999986342999988755 Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELET 56 (83) Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~ 56 (83) .....|+.|+|+.+|+|..+|.+.-+ T Consensus 57 ~~~~~t~~eIa~~~~vs~~tI~~~yk 82 (95) T d1aisb2 57 EGEKRTQREVAEVARVTEVTVRNRYK 82 (95) T ss_dssp TTCCCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 39996899999998988999999999 No 158 >d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]} Probab=34.32 E-value=14 Score=15.63 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=20.7 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 983994999999863429999887 Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 31 ~~~gltq~ela~~~gis~~~is~i 54 (83) ...-+|..|+|+.+|+|++++++- T Consensus 25 ~~~~~~~~ela~~l~~s~~~v~~H 48 (194) T d2p4wa1 25 TKRPYFVSELSRELGVGQKAVLEH 48 (194) T ss_dssp HHSCEEHHHHHHHHTCCHHHHHHH T ss_pred HHCCCCHHHHHHHHCCCHHHHHHH T ss_conf 808987999999989099899999 No 159 >d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=33.83 E-value=11 Score=16.23 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=18.2 Q ss_pred CCC-CHHHHHHHHHHHHHHHHHH Q ss_conf 399-4999999863429999887 Q gi|254781147|r 33 AKL-TQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 33 ~gl-tq~ela~~~gis~~~is~i 54 (83) ..+ |+.+||+..|+|++++.+. T Consensus 25 ~~LPs~~eLa~~~~vSr~tvr~A 47 (74) T d1hw1a1 25 TILPAERELSELIGVTRTTLREV 47 (74) T ss_dssp SBCCCHHHHHHHHTCCHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHH T ss_conf 99834999999989798999999 No 160 >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} Probab=33.69 E-value=12 Score=16.01 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=22.4 Q ss_pred HHHHH-HHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999-9983994999999863429999887 Q gi|254781147|r 25 NFRNI-RKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 25 ~ir~~-R~~~gltq~ela~~~gis~~~is~i 54 (83) .|..+ +.....+..++|+.+|+++++++.. T Consensus 13 ~I~~L~~~~~~v~~~~iA~~L~vs~~SVt~m 43 (63) T d2isya1 13 TIYDLEEEGVTPLRARIAERLDQSGPTVSQT 43 (63) T ss_dssp HHHHHHHTTCCCCHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCHHHHHH T ss_conf 9999985589770999999968994439999 No 161 >d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]} Probab=32.32 E-value=7.4 Score=17.28 Aligned_cols=22 Identities=14% Similarity=0.065 Sum_probs=11.1 Q ss_pred CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 3994999999863429999887 Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 33 ~gltq~ela~~~gis~~~is~i 54 (83) .|=|...+|.+-|++...|.++ T Consensus 9 ~GDTl~~IA~~y~vs~~~i~~~ 30 (48) T d1e0ga_ 9 KGDSLSSIAKRHGVNIKDVMRW 30 (48) T ss_dssp TTCCHHHHHHHHTCCHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999999999979889999987 No 162 >d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} Probab=31.39 E-value=15 Score=15.47 Aligned_cols=45 Identities=9% Similarity=0.122 Sum_probs=31.3 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHC-----C-------------CCCCCHHHHHHHHHHHCC Q ss_conf 98399499999986342999988755-----8-------------999448999999999289 Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELET-----G-------------KSTINIDNMIILAHTLDT 75 (83) Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~-----G-------------~~~~~~~~l~~la~al~i 75 (83) ...-+|-+++|+..|+++.++.++-+ | ...|.--+|..+-++++- T Consensus 20 ~~~~vss~~IA~~~~i~~~~l~kil~~L~~aGlv~S~rG~GG~~L~~~p~~ItL~dI~~aie~ 82 (138) T d1ylfa1 20 PSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDLHEITLLDVYHAVNV 82 (138) T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CCEEESSCGGGCBHHHHHHHHCC T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCEECCCHHHCCHHHHHHHHHC T ss_conf 998684999999979699999999999988898685349998331478744689999999843 No 163 >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Probab=29.64 E-value=4 Score=18.89 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=17.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 3994999999863429999887 Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 33 ~gltq~ela~~~gis~~~is~i 54 (83) .++|+.++|+.++++.++++++ T Consensus 49 ~~~t~~eia~~~~~~~~~vs~~ 70 (125) T d1p4xa1 49 NTLPFKKIVSDLCYKQSDLVQH 70 (125) T ss_dssp SEEEHHHHHHHSSSCGGGTHHH T ss_pred CCCCHHHHHHHHCCCCCHHHHH T ss_conf 9867999999968882439999 No 164 >d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]} Probab=29.33 E-value=14 Score=15.70 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=19.1 Q ss_pred HHCCC-CHHHHHHHHHHHHHHHHHH Q ss_conf 98399-4999999863429999887 Q gi|254781147|r 31 KEAKL-TQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 31 ~~~gl-tq~ela~~~gis~~~is~i 54 (83) -...+ |..+||+..|+|++++.+. T Consensus 18 ~G~~LPse~~La~~~~vSr~tvr~A 42 (78) T d3bwga1 18 QGDKLPVLETLMAQFEVSKSTITKS 42 (78) T ss_dssp TTCBCCCHHHHHHHTTCCHHHHHHH T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9399937999999988798999999 No 165 >d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]} Probab=24.68 E-value=20 Score=14.71 Aligned_cols=19 Identities=11% Similarity=-0.001 Sum_probs=15.3 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 4999999863429999887 Q gi|254781147|r 36 TQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 36 tq~ela~~~gis~~~is~i 54 (83) |....|+.+|+|++++|+- T Consensus 22 s~t~AA~~l~isq~avs~~ 40 (89) T d2esna1 22 NVGTAASELAISASAFSHA 40 (89) T ss_dssp SHHHHHHHHTCCHHHHHHH T ss_pred CHHHHHHHHCCCCCHHHHH T ss_conf 9999999877998475599 No 166 >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=24.14 E-value=18 Score=15.03 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=17.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 3994999999863429999887 Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 33 ~gltq~ela~~~gis~~~is~i 54 (83) ..++..+||+..|+|++++.+. T Consensus 24 ~~l~~~~La~~~~vSr~tvr~A 45 (69) T d2hs5a1 24 ARLSEPDICAALDVSRNTVREA 45 (69) T ss_dssp CEECHHHHHHHHTCCHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHH T ss_conf 9669999999989798999999 No 167 >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} Probab=23.98 E-value=21 Score=14.54 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=27.6 Q ss_pred HHHHHHHHHHHHHCC--CCHHHHHHHHHH-HHHHHHHH Q ss_conf 999999999999839--949999998634-29999887 Q gi|254781147|r 20 MIFVNNFRNIRKEAK--LTQKEIRNRTGF-AQSWISEL 54 (83) Q Consensus 20 ~~~g~~ir~~R~~~g--ltq~ela~~~gi-s~~~is~i 54 (83) ..+-..|+..-.+.| =|.+|+|+.+|+ |.+++..+ T Consensus 8 ~~vL~~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~ 45 (71) T d1jhfa1 8 QEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEH 45 (71) T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHH T ss_conf 99999999999982889889999977299999999999 No 168 >d1d4ca3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Probab=23.44 E-value=22 Score=14.49 Aligned_cols=20 Identities=10% Similarity=0.121 Sum_probs=14.1 Q ss_pred CCCCHHHHHHHHHHHHHHHH Q ss_conf 39949999998634299998 Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWIS 52 (83) Q Consensus 33 ~gltq~ela~~~gis~~~is 52 (83) ++-|.+|||+.+|++...+. T Consensus 83 ka~TleeLA~~~gid~~~L~ 102 (146) T d1d4ca3 83 EGKTIEELAKQIDVPAAELA 102 (146) T ss_dssp EESSHHHHHHHHTCCHHHHH T ss_pred ECCCHHHHHHHHCCCHHHHH T ss_conf 74889999998698978999 No 169 >d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]} Probab=22.87 E-value=22 Score=14.41 Aligned_cols=46 Identities=9% Similarity=0.107 Sum_probs=30.4 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHC------------C------CCCCCHHHHHHHHHHHCCC Q ss_conf 98399499999986342999988755------------8------9994489999999992899 Q gi|254781147|r 31 KEAKLTQKEIRNRTGFAQSWISELET------------G------KSTINIDNMIILAHTLDTP 76 (83) Q Consensus 31 ~~~gltq~ela~~~gis~~~is~iE~------------G------~~~~~~~~l~~la~al~i~ 76 (83) .+..+|-+++|+..|++++++.+|-+ | .+.|.--+|..+-++++-+ T Consensus 15 ~~~~~ss~~IA~~~~~~~~~v~kIl~~L~~aglV~s~rG~~GGyLar~p~~Itl~dI~~ave~~ 78 (127) T d1xd7a_ 15 MDEKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPGASLKKDPADISLLEVYRAVQKQ 78 (127) T ss_dssp TCSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSSSSCEESSCGGGCBHHHHHHHHCC- T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCC T ss_conf 4999899999988695999999999999980765126899985106897869299999998187 No 170 >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} Probab=21.43 E-value=8.7 Score=16.86 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=30.8 Q ss_pred HHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCC Q ss_conf 999863429999-88755899944899999999928999996088 Q gi|254781147|r 40 IRNRTGFAQSWI-SELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 (83) Q Consensus 40 la~~~gis~~~i-s~iE~G~~~~~~~~l~~la~al~i~~~~l~~P 83 (83) .|...|.++=-+ +.++.|-..|+...+..+.+.+++|+.-++.| T Consensus 15 ~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~iPv~vMIRP 59 (247) T d1twda_ 15 TAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRP 59 (247) T ss_dssp HHHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCCSCEEEBCCS T ss_pred HHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEC T ss_conf 999849998998477666997999999999998649972799704 No 171 >d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]} Probab=21.11 E-value=20 Score=14.73 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=26.2 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999983994999999863429999887 Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~i 54 (83) .+-..+-.+....+.|-.++|+.+|++.+.|.+. T Consensus 11 lvk~~l~~L~~~~~~tA~~LAk~Lg~~Kk~VNr~ 44 (70) T d1sfua_ 11 LVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQ 44 (70) T ss_dssp HHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHH T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHH T ss_conf 9999997458777704999999959889898899 No 172 >d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Probab=20.73 E-value=25 Score=14.15 Aligned_cols=19 Identities=5% Similarity=0.038 Sum_probs=12.8 Q ss_pred CCCCHHHHHHHHHHHHHHH Q ss_conf 3994999999863429999 Q gi|254781147|r 33 AKLTQKEIRNRTGFAQSWI 51 (83) Q Consensus 33 ~gltq~ela~~~gis~~~i 51 (83) +.-|.+|||+.+|++...+ T Consensus 82 ~adtleeLA~~~gid~~~L 100 (143) T d1y0pa3 82 TADSLVKLGKMEGIDGKAL 100 (143) T ss_dssp EESSHHHHHHHHTSCHHHH T ss_pred ECCCHHHHHHHHCCCHHHH T ss_conf 3583999999859897898 No 173 >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} Probab=20.19 E-value=26 Score=14.08 Aligned_cols=25 Identities=8% Similarity=0.143 Sum_probs=21.1 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9983994999999863429999887 Q gi|254781147|r 30 RKEAKLTQKEIRNRTGFAQSWISEL 54 (83) Q Consensus 30 R~~~gltq~ela~~~gis~~~is~i 54 (83) ......+..++|+.+|+++++++.. T Consensus 17 ~~~~~v~~~~iA~~L~vs~~SVs~m 41 (61) T d2ev0a1 17 EEKGYARVSDIAEALAVHPSSVTKM 41 (61) T ss_dssp HHHSSCCHHHHHHHHTCCHHHHHHH T ss_pred HCCCCCCHHHHHHHHCCCCHHHHHH T ss_conf 3589750999999958995159999 No 174 >d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=20.12 E-value=21 Score=14.57 Aligned_cols=35 Identities=6% Similarity=0.042 Sum_probs=19.1 Q ss_pred HHHHHHHHHHHHC-CC-CHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999983-99-49999998634299998875 Q gi|254781147|r 21 IFVNNFRNIRKEA-KL-TQKEIRNRTGFAQSWISELE 55 (83) Q Consensus 21 ~~g~~ir~~R~~~-gl-tq~ela~~~gis~~~is~iE 55 (83) ..+.+|-.+|.+. ++ +.+||.+.-|++..++.+|. T Consensus 44 ~~A~~II~yR~~~G~f~sledL~~V~Gi~~k~~eki~ 80 (91) T d2edua1 44 KKAQLIVGWRELHGPFSQVEDLERVEGITGKQMESFL 80 (91) T ss_dssp HHHHHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHH T ss_conf 9999999999985997889998008898999999999 Done!