RPSBLAST alignment of GI: 254781147 and protein with PDBid: 3ivp

>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630} Length = 126

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 8/60 (13%), Positives = 24/60 (40%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
             +  RK+  LT++++         +++ +E      ++  +  L   L+  + +   P
Sbjct: 15 LAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLP 74