Query gi|254781148|ref|YP_003065561.1| hypothetical protein CLIBASIA_05275 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 69
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Mon May 30 05:14:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781148.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05636 replicative DNA helic 96.3 0.0056 1.4E-07 37.4 4.0 45 20-64 75-120 (507)
2 PRK08082 consensus 96.1 0.0083 2.1E-07 36.5 4.1 44 21-64 14-58 (453)
3 PRK07773 replicative DNA helic 96.1 0.0061 1.6E-07 37.2 3.3 45 21-65 12-57 (868)
4 PRK08760 replicative DNA helic 96.0 0.01 2.6E-07 36.0 4.2 44 21-64 37-81 (476)
5 PRK05748 replicative DNA helic 96.0 0.0098 2.5E-07 36.1 4.0 45 20-64 13-58 (448)
6 PRK06904 replicative DNA helic 95.9 0.011 2.7E-07 35.9 4.1 44 21-64 27-71 (472)
7 PRK07263 consensus 95.8 0.013 3.3E-07 35.4 4.3 44 21-64 14-58 (453)
8 TIGR03600 phage_DnaB phage rep 95.8 0.0095 2.4E-07 36.2 3.5 43 21-63 2-45 (421)
9 PRK08006 replicative DNA helic 95.7 0.013 3.4E-07 35.4 3.9 44 21-64 31-75 (471)
10 PRK08840 replicative DNA helic 95.7 0.015 3.8E-07 35.1 4.1 44 21-64 24-68 (464)
11 PRK08694 consensus 95.7 0.016 4.1E-07 34.9 4.2 45 20-64 23-68 (468)
12 PRK09165 replicative DNA helic 95.6 0.016 4.1E-07 34.9 4.0 44 21-64 13-57 (484)
13 pfam00772 DnaB DnaB-like helic 95.5 0.017 4.4E-07 34.7 3.9 45 21-65 6-51 (103)
14 PRK07004 replicative DNA helic 95.5 0.02 5.2E-07 34.4 4.1 46 19-64 17-63 (460)
15 PRK06321 replicative DNA helic 95.5 0.021 5.4E-07 34.2 4.1 43 21-63 20-63 (472)
16 PRK06749 replicative DNA helic 95.3 0.01 2.7E-07 35.9 2.1 42 21-63 6-47 (428)
17 PRK08506 replicative DNA helic 95.2 0.015 3.9E-07 35.1 2.8 46 19-64 6-52 (473)
18 PRK05595 replicative DNA helic 94.9 0.037 9.4E-07 33.0 3.9 44 21-64 12-56 (444)
19 COG0305 DnaB Replicative DNA h 83.5 1 2.6E-05 25.2 2.7 44 21-64 7-51 (435)
20 pfam05434 Tmemb_9 TMEM9. This 35.5 42 0.0011 16.4 3.1 52 7-67 44-95 (149)
21 KOG0718 consensus 28.8 55 0.0014 15.7 2.8 49 7-55 352-401 (546)
22 KOG2168 consensus 24.3 37 0.00094 16.6 1.2 48 2-57 456-506 (835)
23 pfam03012 PP_M1 Phosphoprotein 21.8 62 0.0016 15.4 1.9 32 4-42 209-240 (298)
No 1
>PRK05636 replicative DNA helicase; Provisional
Probab=96.26 E-value=0.0056 Score=37.43 Aligned_cols=45 Identities=31% Similarity=0.480 Sum_probs=38.8
Q ss_pred EEECHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87100899988887065-5599998517762114789999998552
Q gi|254781148|r 20 FIGLEQEILGSLLLKGN-LQPIISFLDAQHFIDPIHSEVFRAITRK 64 (69)
Q Consensus 20 figleqeilgslllkgn-lqpiisfldaqhfidpihsevfraitrk 64 (69)
=+-.||.+||++|+..+ +.-++.+|.+.||-+|.|-.+|+||..-
T Consensus 75 niEAEqaVLGaiLld~~~~~~V~~~L~peDFY~~~H~~IF~AI~~L 120 (507)
T PRK05636 75 DNDAEQGVLGAMLLSPDTVIDIVEVLVPEDFYRPAHQLIFQAIIDL 120 (507)
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHH
T ss_conf 8999999999998186489999965598768988899999999999
No 2
>PRK08082 consensus
Probab=96.08 E-value=0.0083 Score=36.48 Aligned_cols=44 Identities=23% Similarity=0.401 Sum_probs=37.6
Q ss_pred EECHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7100899988887065559-9998517762114789999998552
Q gi|254781148|r 21 IGLEQEILGSLLLKGNLQP-IISFLDAQHFIDPIHSEVFRAITRK 64 (69)
Q Consensus 21 igleqeilgslllkgnlqp-iisfldaqhfidpihsevfraitrk 64 (69)
+-.||.+||++|+..+.-+ +..+|.+.||-+|.|..+|+||..-
T Consensus 14 iEAEqaVLGalL~d~~~~~~i~~~L~~edFy~~~H~~If~ai~~L 58 (453)
T PRK08082 14 IEAEQAVLGAIFLEPDALTTASELLIPDDFYRTSHQKIFEVMLGL 58 (453)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999998394279999851498878988999999999999
No 3
>PRK07773 replicative DNA helicase; Validated
Probab=96.05 E-value=0.0061 Score=37.19 Aligned_cols=45 Identities=29% Similarity=0.539 Sum_probs=38.3
Q ss_pred EECHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7100899988887065-55999985177621147899999985522
Q gi|254781148|r 21 IGLEQEILGSLLLKGN-LQPIISFLDAQHFIDPIHSEVFRAITRKT 65 (69)
Q Consensus 21 igleqeilgslllkgn-lqpiisfldaqhfidpihsevfraitrkt 65 (69)
|-.||.+||++|+..+ +..++.+|.+.+|-+|.|..+|+||..--
T Consensus 12 iEAEqaVLGaiLld~~ai~~v~~~L~~edFY~~~Hq~If~Ai~~L~ 57 (868)
T PRK07773 12 IAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNIYDAILDLY 57 (868)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 8999999999980873799999645987679767999999999999
No 4
>PRK08760 replicative DNA helicase; Provisional
Probab=95.97 E-value=0.01 Score=35.96 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=37.2
Q ss_pred EECHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 710089998888706555999-98517762114789999998552
Q gi|254781148|r 21 IGLEQEILGSLLLKGNLQPII-SFLDAQHFIDPIHSEVFRAITRK 64 (69)
Q Consensus 21 igleqeilgslllkgnlqpii-sfldaqhfidpihsevfraitrk 64 (69)
+-.||.+||++|+..+.-+.+ ..|...+|-+|-|..+|+||..-
T Consensus 37 iEAEqaVLGalLl~~~~~~~v~~~L~pedFY~~~H~~IF~ai~~L 81 (476)
T PRK08760 37 VEAEQAVLGGLMLAPDALDKVNDQLTENDFYRRDHRLIYRAIREL 81 (476)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHH
T ss_conf 899999999999083089999975498767988899999999999
No 5
>PRK05748 replicative DNA helicase; Provisional
Probab=95.96 E-value=0.0098 Score=36.09 Aligned_cols=45 Identities=29% Similarity=0.513 Sum_probs=37.7
Q ss_pred EEECHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8710089998888706555-99998517762114789999998552
Q gi|254781148|r 20 FIGLEQEILGSLLLKGNLQ-PIISFLDAQHFIDPIHSEVFRAITRK 64 (69)
Q Consensus 20 figleqeilgslllkgnlq-piisfldaqhfidpihsevfraitrk 64 (69)
=+-.||.+||++|+....- .+..+|.+.||-+|.|..+|++|..-
T Consensus 13 n~EAE~aVLGalL~~~~~~~~v~~~L~~edFy~~~H~~If~aI~~L 58 (448)
T PRK05748 13 SIEAEQAVLGAIFLDNDALIRVSEFLSPDDFYRHAHRLIFRAMLKL 58 (448)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHH
T ss_conf 8999999999998590179999851698778988999999999999
No 6
>PRK06904 replicative DNA helicase; Validated
Probab=95.93 E-value=0.011 Score=35.87 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=37.6
Q ss_pred EECHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 71008999888870655-599998517762114789999998552
Q gi|254781148|r 21 IGLEQEILGSLLLKGNL-QPIISFLDAQHFIDPIHSEVFRAITRK 64 (69)
Q Consensus 21 igleqeilgslllkgnl-qpiisfldaqhfidpihsevfraitrk 64 (69)
+-.||.+||++|+.... .-++.+|.+.||-+|.|..+|+||..-
T Consensus 27 lEAEqaVLGalL~d~~~~~~v~~~L~~edFY~~~H~~If~ai~~L 71 (472)
T PRK06904 27 IEAEQAVLGGIMLDNRHWDSVAERVIADDFYTFEHRIIFQEMELL 71 (472)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHH
T ss_conf 899999999999083189999964599868988899999999999
No 7
>PRK07263 consensus
Probab=95.84 E-value=0.013 Score=35.40 Aligned_cols=44 Identities=25% Similarity=0.456 Sum_probs=37.1
Q ss_pred EECHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 71008999888870655-599998517762114789999998552
Q gi|254781148|r 21 IGLEQEILGSLLLKGNL-QPIISFLDAQHFIDPIHSEVFRAITRK 64 (69)
Q Consensus 21 igleqeilgslllkgnl-qpiisfldaqhfidpihsevfraitrk 64 (69)
+-.||.+||++|+..+. .-+..+|++.||.+|.|..+|++|..-
T Consensus 14 leAE~aVLGaiL~~~~~~~~v~~~L~~edFy~~~H~~If~ai~~L 58 (453)
T PRK07263 14 LLAEQSVLGSIFISPDKLIAVREFISPDDFYKYAHKIIFRAMITL 58 (453)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999999192079999964698768988999999999999
No 8
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.83 E-value=0.0095 Score=36.17 Aligned_cols=43 Identities=33% Similarity=0.597 Sum_probs=37.3
Q ss_pred EECHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7100899988887065559-999851776211478999999855
Q gi|254781148|r 21 IGLEQEILGSLLLKGNLQP-IISFLDAQHFIDPIHSEVFRAITR 63 (69)
Q Consensus 21 igleqeilgslllkgnlqp-iisfldaqhfidpihsevfraitr 63 (69)
|-.||.+||++|+..+.-+ ++.+|.+.+|-+|.|..+|++|..
T Consensus 2 ieaE~~vLgalL~~~~~~~~v~~~L~~e~F~~~~h~~If~ai~~ 45 (421)
T TIGR03600 2 IEAEQAVLGGLLLDNDFIERVMAILKPEHFYSQDHRIIFEAMLD 45 (421)
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHH
T ss_conf 08999999999819878999984449986799679999999999
No 9
>PRK08006 replicative DNA helicase; Provisional
Probab=95.74 E-value=0.013 Score=35.39 Aligned_cols=44 Identities=27% Similarity=0.426 Sum_probs=37.8
Q ss_pred EECHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7100899988887065559-9998517762114789999998552
Q gi|254781148|r 21 IGLEQEILGSLLLKGNLQP-IISFLDAQHFIDPIHSEVFRAITRK 64 (69)
Q Consensus 21 igleqeilgslllkgnlqp-iisfldaqhfidpihsevfraitrk 64 (69)
+-.||.+||++|+..+.-+ +..+|.+.+|.+|-|..+|+||..-
T Consensus 31 ~EAEqaVLGaiLld~d~~~~v~~~L~~edFY~~~H~~IF~ai~~L 75 (471)
T PRK08006 31 IEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARL 75 (471)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHH
T ss_conf 899999999999286489999963698767998899999999999
No 10
>PRK08840 replicative DNA helicase; Provisional
Probab=95.71 E-value=0.015 Score=35.09 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=38.2
Q ss_pred EECHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7100899988887065559-9998517762114789999998552
Q gi|254781148|r 21 IGLEQEILGSLLLKGNLQP-IISFLDAQHFIDPIHSEVFRAITRK 64 (69)
Q Consensus 21 igleqeilgslllkgnlqp-iisfldaqhfidpihsevfraitrk 64 (69)
+-.||.+||++|+....-+ +..+|.+.+|-+|-|..+|+||..-
T Consensus 24 ~EAEqaVLGaiL~d~d~~~~v~~~L~pedFY~~~H~~IF~ai~~L 68 (464)
T PRK08840 24 LEAEQSVLGGLLLDNERWDTVAEKVVAKDFYSRPHRLIFEAVKSI 68 (464)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHH
T ss_conf 899999999998181079999964598757988999999999999
No 11
>PRK08694 consensus
Probab=95.69 E-value=0.016 Score=34.90 Aligned_cols=45 Identities=27% Similarity=0.447 Sum_probs=38.1
Q ss_pred EEECHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87100899988887065559-9998517762114789999998552
Q gi|254781148|r 20 FIGLEQEILGSLLLKGNLQP-IISFLDAQHFIDPIHSEVFRAITRK 64 (69)
Q Consensus 20 figleqeilgslllkgnlqp-iisfldaqhfidpihsevfraitrk 64 (69)
=+..||.+||++|+....-+ +...|.+.+|-+|.|-.+|+||..-
T Consensus 23 nlEAEqaVLGaiLld~~~~~~v~~~L~pedFy~~~H~~IF~ai~~L 68 (468)
T PRK08694 23 SMEAEQSVLGGLMLENPAWDRIADVVSGEDFYRHEHRLIFRSIAKL 68 (468)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHH
T ss_conf 8999999999998093289999964598768988899999999999
No 12
>PRK09165 replicative DNA helicase; Provisional
Probab=95.62 E-value=0.016 Score=34.91 Aligned_cols=44 Identities=32% Similarity=0.723 Sum_probs=37.8
Q ss_pred EECHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 710089998888706555-99998517762114789999998552
Q gi|254781148|r 21 IGLEQEILGSLLLKGNLQ-PIISFLDAQHFIDPIHSEVFRAITRK 64 (69)
Q Consensus 21 igleqeilgslllkgnlq-piisfldaqhfidpihsevfraitrk 64 (69)
+-.||.+||++|+....- .+..+|.+.+|-+|.|..+|++|..-
T Consensus 13 ~eAE~aVLGalL~~~~~~~~v~~~L~~edFy~~~H~~If~ai~~L 57 (484)
T PRK09165 13 IEAEQALLGAILINNRALYRVSDFLKPEHFFEPLHQRIYEAIAKI 57 (484)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHH
T ss_conf 899999999998491079999852798777989999999999999
No 13
>pfam00772 DnaB DnaB-like helicase N terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity.
Probab=95.53 E-value=0.017 Score=34.73 Aligned_cols=45 Identities=36% Similarity=0.605 Sum_probs=38.1
Q ss_pred EECHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7100899988887065-55999985177621147899999985522
Q gi|254781148|r 21 IGLEQEILGSLLLKGN-LQPIISFLDAQHFIDPIHSEVFRAITRKT 65 (69)
Q Consensus 21 igleqeilgslllkgn-lqpiisfldaqhfidpihsevfraitrkt 65 (69)
+..||.+||++|...+ +.-++..|...||-+|.|..+|++|..-.
T Consensus 6 ~eaE~~lLg~lL~~~~~~~~i~~~l~~edF~~~~h~~If~~i~~l~ 51 (103)
T pfam00772 6 IEAEQAVLGALLLDPEAIDEVADILKPEDFYDPAHRLIFEAILELY 51 (103)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999999996974899999727999849599999999999998
No 14
>PRK07004 replicative DNA helicase; Provisional
Probab=95.47 E-value=0.02 Score=34.36 Aligned_cols=46 Identities=35% Similarity=0.426 Sum_probs=38.8
Q ss_pred EEEECHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 887100899988887065559-9998517762114789999998552
Q gi|254781148|r 19 YFIGLEQEILGSLLLKGNLQP-IISFLDAQHFIDPIHSEVFRAITRK 64 (69)
Q Consensus 19 yfigleqeilgslllkgnlqp-iisfldaqhfidpihsevfraitrk 64 (69)
|=+-.||.+||++|+..+.-+ +..+|...||-+|.|..+|+||..-
T Consensus 17 ~~leaE~aVLGalL~~~~~~~~v~~~L~~edFy~~~H~~If~ai~~L 63 (460)
T PRK07004 17 HSIEAEQSVLGGLLLDNAAWDRIADFLSQSDFYRYDHRIIFEHIGRL 63 (460)
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHH
T ss_conf 98999999999998394179999852798778988999999999999
No 15
>PRK06321 replicative DNA helicase; Provisional
Probab=95.45 E-value=0.021 Score=34.25 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=37.4
Q ss_pred EECHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7100899988887065559-999851776211478999999855
Q gi|254781148|r 21 IGLEQEILGSLLLKGNLQP-IISFLDAQHFIDPIHSEVFRAITR 63 (69)
Q Consensus 21 igleqeilgslllkgnlqp-iisfldaqhfidpihsevfraitr 63 (69)
+-.||.+||++|+..+.-+ +...|...||-+|-|..+|+||..
T Consensus 20 ~EAE~aVLGaiL~~~~~~~~v~~~L~~edFy~~~H~~IF~ai~~ 63 (472)
T PRK06321 20 KESEMIVLGCMLTGVNYLNLAANQLQEDDFYFLEHKIIFRVLQD 63 (472)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHH
T ss_conf 99999999999839227999996459876898899999999999
No 16
>PRK06749 replicative DNA helicase; Provisional
Probab=95.27 E-value=0.01 Score=35.93 Aligned_cols=42 Identities=36% Similarity=0.624 Sum_probs=36.4
Q ss_pred EECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7100899988887065559999851776211478999999855
Q gi|254781148|r 21 IGLEQEILGSLLLKGNLQPIISFLDAQHFIDPIHSEVFRAITR 63 (69)
Q Consensus 21 igleqeilgslllkgnlqpiisfldaqhfidpihsevfraitr 63 (69)
+-.||.+||++|+.++.-.-++ |.+.||-+|.|-.+|+||..
T Consensus 6 iEAEqaVLGalLld~~~i~~v~-L~~e~Fy~~~H~~If~ai~~ 47 (428)
T PRK06749 6 VEAEKTVLGSLLLDGELIKECR-LTEQYFSMPVHKSIFQLMRK 47 (428)
T ss_pred HHHHHHHHHHHHCCCCCCEEEE-ECHHHCCCHHHHHHHHHHHH
T ss_conf 9999999999982804000154-08788797889999999999
No 17
>PRK08506 replicative DNA helicase; Provisional
Probab=95.23 E-value=0.015 Score=35.05 Aligned_cols=46 Identities=24% Similarity=0.520 Sum_probs=39.1
Q ss_pred EEEECHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88710089998888706555-99998517762114789999998552
Q gi|254781148|r 19 YFIGLEQEILGSLLLKGNLQ-PIISFLDAQHFIDPIHSEVFRAITRK 64 (69)
Q Consensus 19 yfigleqeilgslllkgnlq-piisfldaqhfidpihsevfraitrk 64 (69)
|=+..||.+||++|+..+.- .+...|.+.||-+|.|..+|+||..-
T Consensus 6 ~nieAEqaVLGalL~~~~~~~~v~~~L~~edFy~~~H~~If~ai~~L 52 (473)
T PRK08506 6 YDLDIERSVLSSIVFSPEAFEEIAGVLEPKDFYLPAHQDIFEAMIKL 52 (473)
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHH
T ss_conf 68999999999998597389999831798778988999999999999
No 18
>PRK05595 replicative DNA helicase; Provisional
Probab=94.85 E-value=0.037 Score=32.95 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=37.5
Q ss_pred EECHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 710089998888706555-99998517762114789999998552
Q gi|254781148|r 21 IGLEQEILGSLLLKGNLQ-PIISFLDAQHFIDPIHSEVFRAITRK 64 (69)
Q Consensus 21 igleqeilgslllkgnlq-piisfldaqhfidpihsevfraitrk 64 (69)
+-.||.+||++|+..+.- -++.+|...||-+|.|..+|+||..-
T Consensus 12 ~eaE~aVLGalL~~~~~~~~v~~~L~~edFy~~~H~~IF~ai~~L 56 (444)
T PRK05595 12 IEAEQSVLGAMIIDKTSIAQAAEVLNSEDFYRDSHKIIFSAIIEL 56 (444)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999999195689999951598877988999999999999
No 19
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=83.51 E-value=1 Score=25.16 Aligned_cols=44 Identities=30% Similarity=0.535 Sum_probs=36.8
Q ss_pred EECHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7100899988887065-5599998517762114789999998552
Q gi|254781148|r 21 IGLEQEILGSLLLKGN-LQPIISFLDAQHFIDPIHSEVFRAITRK 64 (69)
Q Consensus 21 igleqeilgslllkgn-lqpiisfldaqhfidpihsevfraitrk 64 (69)
+.-||-+||++++--+ +.-+..+|.+.+|..|.|...|+|++.-
T Consensus 7 ~eAE~~vLG~il~~~~~~~~i~~~l~~~dFy~~~H~~IF~a~~~l 51 (435)
T COG0305 7 IEAEQAVLGGILLDPDAIERVSERLRPEDFYRPAHRLIYQAILDL 51 (435)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHH
T ss_conf 799999866540488889999972685320767899999999999
No 20
>pfam05434 Tmemb_9 TMEM9. This family contains several eukaryotic transmembrane proteins which are homologous to human transmembrane protein 9. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N-terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to man and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localized to the late endosomes and lysosomes. Members of this family contain pfam03128 repeats in their N-terminal region.
Probab=35.46 E-value=42 Score=16.36 Aligned_cols=52 Identities=27% Similarity=0.314 Sum_probs=32.7
Q ss_pred HHHHCCCCCEEEEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7762145882898871008999888870655599998517762114789999998552204
Q gi|254781148|r 7 KKYYSRNNNSIYYFIGLEQEILGSLLLKGNLQPIISFLDAQHFIDPIHSEVFRAITRKTTN 67 (69)
Q Consensus 7 kkyysrnnnsiyyfigleqeilgslllkgnlqpiisfldaqhfidpihsevfraitrkttn 67 (69)
-||-+||...|--.|=+---|+|.|++- ..-.-+.||+-..-+.+.....+|
T Consensus 44 Ckye~RntttikVvviivi~vi~~L~~Y---------m~fL~~lDPll~Kr~~~~~~~h~~ 95 (149)
T pfam05434 44 CKYEERSTTTIKVTIIIYLSIIGLLLLY---------MLFLMLLDPLLRKRVKANYQEHTE 95 (149)
T ss_pred CEEECCCCEEEEEEEEEHHHHHHHHHHH---------HHHHHHHHHHHCCCCCCCHHHHCC
T ss_conf 3312046506899998617999999999---------999998668861534321233235
No 21
>KOG0718 consensus
Probab=28.85 E-value=55 Score=15.69 Aligned_cols=49 Identities=24% Similarity=0.223 Sum_probs=42.4
Q ss_pred HHHHCCCCCEEEEEEECHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHHH
Q ss_conf 776214588289887100899988887065559999-8517762114789
Q gi|254781148|r 7 KKYYSRNNNSIYYFIGLEQEILGSLLLKGNLQPIIS-FLDAQHFIDPIHS 55 (69)
Q Consensus 7 kkyysrnnnsiyyfigleqeilgslllkgnlqpiis-fldaqhfidpihs 55 (69)
|+..+|.+.++.+-|-|-.|++-+-.+-|-.-|+++ |.-++-+++|---
T Consensus 352 k~~~~R~~Q~~~~pI~l~d~~~p~avfya~v~P~~s~F~l~k~v~rP~~~ 401 (546)
T KOG0718 352 KVKLLRAGQKYSFPIHLCDELLPSAVFYALVFPITSYFGLKKFVLRPYLL 401 (546)
T ss_pred EEEEECCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHEECHHHH
T ss_conf 87660368679988886101213655631167788999888871069988
No 22
>KOG2168 consensus
Probab=24.28 E-value=37 Score=16.63 Aligned_cols=48 Identities=31% Similarity=0.706 Sum_probs=32.3
Q ss_pred CCHHHHHHHCCC-CCEEEEEEECHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHHHHHH
Q ss_conf 402567762145-882898871008999888870655599998517762--11478999
Q gi|254781148|r 2 LSDFSKKYYSRN-NNSIYYFIGLEQEILGSLLLKGNLQPIISFLDAQHF--IDPIHSEV 57 (69)
Q Consensus 2 lsdfskkyysrn-nnsiyyfigleqeilgslllkgnlqpiisfldaqhf--idpihsev 57 (69)
|-+|...||..| ++..+|| -.|+|-|-+.+-|.||-..-= ||.+|-.+
T Consensus 456 l~~YG~sYFt~ng~~p~~Yf--------~~LlLsgqfe~AI~fL~~~~~~~~dAVH~AI 506 (835)
T KOG2168 456 LEAYGESYFTNNGSQPLLYF--------QVLLLSGQFERAIEFLHREEPNRIDAVHVAI 506 (835)
T ss_pred HHHHHHHHHCCCCCCHHHHH--------HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 99967886255788728999--------9999987689999998650687500688999
No 23
>pfam03012 PP_M1 Phosphoprotein. This family includes the M1 phosphoprotein non-structural RNA polymerase alpha subunit, which is thought to be a component of the active polymerase, and may be involved in template binding.
Probab=21.79 E-value=62 Score=15.43 Aligned_cols=32 Identities=41% Similarity=0.523 Sum_probs=20.8
Q ss_pred HHHHHHHCCCCCEEEEEEECHHHHHHHHHHHCCHHHHHH
Q ss_conf 256776214588289887100899988887065559999
Q gi|254781148|r 4 DFSKKYYSRNNNSIYYFIGLEQEILGSLLLKGNLQPIIS 42 (69)
Q Consensus 4 dfskkyysrnnnsiyyfigleqeilgslllkgnlqpiis 42 (69)
-|||||---...|--+.-..|| ||-||.-|+.
T Consensus 209 SFSKKYKFPSRSSGIFL~NFEQ-------LKMNLDDIVk 240 (298)
T pfam03012 209 SFSKKYKFPSRSSGIFLWNFEQ-------LKMNLDDIVK 240 (298)
T ss_pred HHCCCCCCCCCCCCEEEECHHH-------HCCCHHHHHH
T ss_conf 7511457887766356653887-------6056899999
Done!