Query gi|254781148|ref|YP_003065561.1| hypothetical protein CLIBASIA_05275 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 69
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:11:36 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781148.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b79_A DNAB helicase; hexamer, 96.2 0.0031 1.3E-07 37.6 3.5 45 21-65 21-66 (119)
2 3gxv_A Replicative DNA helicas 95.5 0.0086 3.6E-07 35.2 3.4 43 22-64 12-55 (123)
3 2r6a_A DNAB helicase, replicat 95.0 0.023 9.7E-07 32.9 4.4 44 21-64 14-58 (454)
4 3bgw_A DNAB-like replicative h 94.6 0.015 6.4E-07 33.9 2.6 45 18-63 12-56 (444)
5 2r5u_A Replicative DNA helicas 94.4 0.019 8.1E-07 33.3 2.7 46 20-65 30-76 (200)
6 2q6t_A DNAB replication FORK h 94.1 0.056 2.3E-06 30.8 4.5 43 21-63 10-54 (444)
7 2r6a_C DNAG primase, helicase 64.5 3.4 0.00014 21.1 2.4 43 22-64 8-50 (143)
8 1vyi_A RNA polymerase alpha su 20.4 33 0.0014 15.7 1.4 33 3-42 22-54 (112)
9 1bm9_A RTP, TER, replication t 20.0 28 0.0012 16.2 1.0 15 50-64 50-64 (122)
10 2wzl_A Phosphoprotein; viral p 18.3 34 0.0014 15.6 1.1 32 4-42 209-240 (303)
No 1
>1b79_A DNAB helicase; hexamer, DNA replication, hydrolase; 2.30A {Escherichia coli} SCOP: a.81.1.1 PDB: 1jwe_A
Probab=96.18 E-value=0.0031 Score=37.59 Aligned_cols=45 Identities=27% Similarity=0.417 Sum_probs=38.3
Q ss_pred EECHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7100899988887065559-99985177621147899999985522
Q gi|254781148|r 21 IGLEQEILGSLLLKGNLQP-IISFLDAQHFIDPIHSEVFRAITRKT 65 (69)
Q Consensus 21 igleqeilgslllkgnlqp-iisfldaqhfidpihsevfraitrkt 65 (69)
+-.||.+||++|+..+.-. +..+|.+.+|-+|.|..+|++|..-.
T Consensus 21 ~eAE~~vLG~lL~~p~~~~~v~~~l~~edFy~~~h~~If~ai~~l~ 66 (119)
T 1b79_A 21 IEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQ 66 (119)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHTTCCGGGSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 8999999999991851899999604998718898999999999998
No 2
>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C
Probab=95.51 E-value=0.0086 Score=35.21 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=36.8
Q ss_pred ECHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10089998888706555-99998517762114789999998552
Q gi|254781148|r 22 GLEQEILGSLLLKGNLQ-PIISFLDAQHFIDPIHSEVFRAITRK 64 (69)
Q Consensus 22 gleqeilgslllkgnlq-piisfldaqhfidpihsevfraitrk 64 (69)
..|+.+||++|.....- .+...+.+.+|-+|.|..+|++|..-
T Consensus 12 ~~E~alLg~lL~~p~~~~~v~~~l~~edF~~~~h~~If~ai~~l 55 (123)
T 3gxv_A 12 NIERIVLSGIVLANHKIEEVHSVLEPSDFYYPPNGLFFEIALKL 55 (123)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHTTCCGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHH
T ss_conf 99999999999698489999946899995979899999999999
No 3
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.02 E-value=0.023 Score=32.88 Aligned_cols=44 Identities=32% Similarity=0.539 Sum_probs=37.0
Q ss_pred EECHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7100899988887065-5599998517762114789999998552
Q gi|254781148|r 21 IGLEQEILGSLLLKGN-LQPIISFLDAQHFIDPIHSEVFRAITRK 64 (69)
Q Consensus 21 igleqeilgslllkgn-lqpiisfldaqhfidpihsevfraitrk 64 (69)
+-.||.+||++|+... +.-+..+|.+.||-+|.|..+|++|..-
T Consensus 14 ~eaE~avLgalL~dp~~~~~v~~~L~~e~F~~~~hr~If~aI~~l 58 (454)
T 2r6a_A 14 IEAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLRV 58 (454)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHCCGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999997695279999940599778997899999999999
No 4
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.62 E-value=0.015 Score=33.86 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=38.3
Q ss_pred EEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9887100899988887065559999851776211478999999855
Q gi|254781148|r 18 YYFIGLEQEILGSLLLKGNLQPIISFLDAQHFIDPIHSEVFRAITR 63 (69)
Q Consensus 18 yyfigleqeilgslllkgnlqpiisfldaqhfidpihsevfraitr 63 (69)
-|=.-.|+.+||++|+....-+-++ |.+.+|-+|.|..+|++|..
T Consensus 12 ~~n~eaE~avLg~lL~~~~~~~~i~-L~~e~F~~~~h~~If~~i~~ 56 (444)
T 3bgw_A 12 LYNEYAEQAVLGSILTEPELIKECP-LTPEHFSPGKHFNIYFTMQD 56 (444)
T ss_dssp --CHHHHHHHHHHHHHSTTHHHHSC-CCGGGSCTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCHHHHHHCE-ECHHHCCCHHHHHHHHHHHH
T ss_conf 8999999999999986964565400-08788889799999999999
No 5
>2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication, DNA-binding, endonuclease; 1.90A {Mycobacterium tuberculosis}
Probab=94.42 E-value=0.019 Score=33.30 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=37.4
Q ss_pred EEECHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87100899988887065559-99985177621147899999985522
Q gi|254781148|r 20 FIGLEQEILGSLLLKGNLQP-IISFLDAQHFIDPIHSEVFRAITRKT 65 (69)
Q Consensus 20 figleqeilgslllkgnlqp-iisfldaqhfidpihsevfraitrkt 65 (69)
=+-.|+-+||++|+....-+ ++.+|...+|.+|.|..+|++|..-.
T Consensus 30 ~~eaEkaVLg~lL~~~~~~~~i~~~L~~edFy~~~h~~If~ai~~l~ 76 (200)
T 2r5u_A 30 DLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLY 76 (200)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHTTCCTTCCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 89999999999994940799999757998778799999999999999
No 6
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.08 E-value=0.056 Score=30.80 Aligned_cols=43 Identities=26% Similarity=0.538 Sum_probs=35.0
Q ss_pred EECHHHHHHHHHHHCCHHH-HHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 7100899988887065559-99985-1776211478999999855
Q gi|254781148|r 21 IGLEQEILGSLLLKGNLQP-IISFL-DAQHFIDPIHSEVFRAITR 63 (69)
Q Consensus 21 igleqeilgslllkgnlqp-iisfl-daqhfidpihsevfraitr 63 (69)
+-.||.+||++|+....-. +..++ .+.||-+|.|..+|++|..
T Consensus 10 ~eaE~avLGalL~~~~~~~~i~~~l~~pe~F~~~~hr~IF~aI~~ 54 (444)
T 2q6t_A 10 LEAEQSVLGSILLDSDVMDEVEGLLPSPEAFYAEAHRKIYAAMQA 54 (444)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHCCSGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHH
T ss_conf 999999999998495589999987588542489889999999999
No 7
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=64.48 E-value=3.4 Score=21.11 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=32.8
Q ss_pred ECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1008999888870655599998517762114789999998552
Q gi|254781148|r 22 GLEQEILGSLLLKGNLQPIISFLDAQHFIDPIHSEVFRAITRK 64 (69)
Q Consensus 22 gleqeilgslllkgnlqpiisfldaqhfidpihsevfraitrk 64 (69)
.-|+.+|+.++...++-.-+.-.-.-+|.+|-|..+|.+|..-
T Consensus 8 ~AEr~LL~~ml~~~~~~~~v~~~~~~~F~~~~~r~I~~~i~~~ 50 (143)
T 2r6a_C 8 NAERLLLAHMMRSRDVALVVQERIGGRFNIEEHRALAAYIYAF 50 (143)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHCCSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999869899999984259870284789999999999
No 8
>1vyi_A RNA polymerase alpha subunit; transferase, replication, transcription, RNA-directed RNA polymerase, phosphorylation; HET: GOL; 1.5A {Rabies virus} SCOP: d.293.1.1
Probab=20.35 E-value=33 Score=15.75 Aligned_cols=33 Identities=39% Similarity=0.520 Sum_probs=20.2
Q ss_pred CHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHCCHHHHHH
Q ss_conf 0256776214588289887100899988887065559999
Q gi|254781148|r 3 SDFSKKYYSRNNNSIYYFIGLEQEILGSLLLKGNLQPIIS 42 (69)
Q Consensus 3 sdfskkyysrnnnsiyyfigleqeilgslllkgnlqpiis 42 (69)
..|||||--....|--+.-..|| ||-||..|+.
T Consensus 22 ESfSKKYKFPSrSSGIFL~NFEQ-------LKmNLDdIVk 54 (112)
T 1vyi_A 22 ESFSKKYKFPSRSSGIFLYNFEQ-------LKMNLDDIVK 54 (112)
T ss_dssp HTTTCCEEEEBTTSCEEEECGGG-------GCCCHHHHHH
T ss_pred HHHHHHCCCCCCCCCEEEECHHH-------HHCCHHHHHH
T ss_conf 98755037887777367761898-------7456899999
No 9
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=20.04 E-value=28 Score=16.15 Aligned_cols=15 Identities=33% Similarity=0.722 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 114789999998552
Q gi|254781148|r 50 IDPIHSEVFRAITRK 64 (69)
Q Consensus 50 idpihsevfraitrk 64 (69)
..|-||||+||...-
T Consensus 50 y~P~hsEiYraLHeL 64 (122)
T 1bm9_A 50 FKPNHTEVYRSLHEL 64 (122)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 899778999999999
No 10
>2wzl_A Phosphoprotein; viral protein, rabies, virion, chaperone, nucleoprotein, RNA replication; 2.10A {Mokola virus}
Probab=18.28 E-value=34 Score=15.64 Aligned_cols=32 Identities=41% Similarity=0.523 Sum_probs=19.7
Q ss_pred HHHHHHHCCCCCEEEEEEECHHHHHHHHHHHCCHHHHHH
Q ss_conf 256776214588289887100899988887065559999
Q gi|254781148|r 4 DFSKKYYSRNNNSIYYFIGLEQEILGSLLLKGNLQPIIS 42 (69)
Q Consensus 4 dfskkyysrnnnsiyyfigleqeilgslllkgnlqpiis 42 (69)
-|||||---...|--+.-..|| ||-||.-|+.
T Consensus 209 SFSKKYKFPSRSSGIFL~NFEQ-------LKMNLDDIVk 240 (303)
T 2wzl_A 209 SFSKKYKFPSRSSGIFLWNFEQ-------LKMNLDDIVK 240 (303)
T ss_dssp TTTCCEEEEBSSSSEEEECGGG-------GCCCHHHHHH
T ss_pred HHCCCCCCCCCCCCEEEECHHH-------HCCCHHHHHH
T ss_conf 7323567887766445534887-------5356899999
Done!