Query         gi|254781148|ref|YP_003065561.1| hypothetical protein CLIBASIA_05275 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 69
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:34:58 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781148.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1b79a_ a.81.1.1 (A:) N-termin  96.0  0.0027 1.9E-07   36.7   3.5   44   21-64      5-49  (102)
  2 d1bm9a_ a.4.5.7 (A:) Replicati  18.8      18  0.0013   15.9   1.0   15   50-64     48-62  (120)
  3 d1vyia_ d.293.1.1 (A:) Phospho  18.3      21  0.0015   15.5   1.2   33    3-42     22-54  (111)
  4 d1dk0a_ d.35.1.1 (A:) Heme-bin   9.0      63  0.0046   12.9   1.7   18   31-48    137-158 (173)
  5 d1cf2o2 d.81.1.1 (O:139-303) G   7.2      72  0.0053   12.6   1.1   14   13-26    150-163 (165)
  6 d1fs1b1 a.157.1.1 (B:86-140) C   6.4      84  0.0061   12.2   1.2   42   21-68      8-49  (55)
  7 d1nexa1 a.157.1.1 (A:116-185)    4.6 1.1E+02  0.0081   11.6   1.2   41   21-67      9-49  (70)
  8 d2p0ta1 a.290.1.1 (A:22-169) U   4.6 1.1E+02  0.0081   11.6   4.6   37   27-63     50-86  (148)
  9 d1b77a2 d.131.1.2 (A:111-228)    4.4      59  0.0043   13.1  -0.8   21    6-26     92-113 (118)
 10 d1r8se_ a.118.3.1 (E:) Exchang   3.7      96   0.007   11.9  -0.1   15    2-16    103-117 (187)

No 1  
>d1b79a_ a.81.1.1 (A:) N-terminal domain of DnaB helicase {Escherichia coli [TaxId: 562]}
Probab=95.97  E-value=0.0027  Score=36.70  Aligned_cols=44  Identities=27%  Similarity=0.453  Sum_probs=37.6

Q ss_pred             EECHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             71008999888870655-599998517762114789999998552
Q gi|254781148|r   21 IGLEQEILGSLLLKGNL-QPIISFLDAQHFIDPIHSEVFRAITRK   64 (69)
Q Consensus        21 igleqeilgslllkgnl-qpiisfldaqhfidpihsevfraitrk   64 (69)
                      +-.||.+||++|+.++. .-+..++...+|-+|.|..+|++|..-
T Consensus         5 ~eaE~~vLg~lL~~~~~~~~v~~~l~~~dFy~~~h~~If~ai~~l   49 (102)
T d1b79a_           5 IEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARL   49 (102)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHTTCCGGGSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHCCHHHHCHHHHHHHHHHHHHH
T ss_conf             899999999999391389999975399986519899999999998


No 2  
>d1bm9a_ a.4.5.7 (A:) Replication terminator protein (RTP) {Bacillus subtilis [TaxId: 1423]}
Probab=18.84  E-value=18  Score=15.92  Aligned_cols=15  Identities=33%  Similarity=0.722  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             114789999998552
Q gi|254781148|r   50 IDPIHSEVFRAITRK   64 (69)
Q Consensus        50 idpihsevfraitrk   64 (69)
                      -.|-|||++||...-
T Consensus        48 y~P~hsEiYraLHeL   62 (120)
T d1bm9a_          48 FKPNHTEVYRSLHEL   62 (120)
T ss_dssp             CCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
T ss_conf             899778999999999


No 3  
>d1vyia_ d.293.1.1 (A:) Phosphoprotein M1, C-terminal domain {Rabies virus, strain CVS-11 [TaxId: 11292]}
Probab=18.30  E-value=21  Score=15.53  Aligned_cols=33  Identities=39%  Similarity=0.520  Sum_probs=19.6

Q ss_pred             CHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHCCHHHHHH
Q ss_conf             0256776214588289887100899988887065559999
Q gi|254781148|r    3 SDFSKKYYSRNNNSIYYFIGLEQEILGSLLLKGNLQPIIS   42 (69)
Q Consensus         3 sdfskkyysrnnnsiyyfigleqeilgslllkgnlqpiis   42 (69)
                      ..|||||--....|--+.-..||       ||-||..|+.
T Consensus        22 ESfSKKYkFPSrSSGIFL~NFEQ-------LKmNLDdIVk   54 (111)
T d1vyia_          22 ESFSKKYKFPSRSSGIFLYNFEQ-------LKMNLDDIVK   54 (111)
T ss_dssp             HTTTCCEEEEBTTSCEEEECGGG-------GCCCHHHHHH
T ss_pred             HHHHHCCCCCCCCCCEEEECHHH-------HHCCHHHHHH
T ss_conf             98655046887777467761898-------7456899999


No 4  
>d1dk0a_ d.35.1.1 (A:) Heme-binding protein A (HasA) {Serratia marcescens [TaxId: 615]}
Probab=8.99  E-value=63  Score=12.89  Aligned_cols=18  Identities=22%  Similarity=0.320  Sum_probs=13.9

Q ss_pred             HHHHCCHHHHHH----HHHHHH
Q ss_conf             887065559999----851776
Q gi|254781148|r   31 LLLKGNLQPIIS----FLDAQH   48 (69)
Q Consensus        31 lllkgnlqpiis----fldaqh   48 (69)
                      =|++||..|+..    .|.||-
T Consensus       137 gLmrGNa~plLe~l~~iLkA~G  158 (173)
T d1dk0a_         137 GLMSGDTGALETALNGILDDYG  158 (173)
T ss_dssp             HHHTTCCHHHHHHHHHHHGGGT
T ss_pred             HHHCCCCHHHHHHHHHHHHCCC
T ss_conf             5433880788888888987079


No 5  
>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}
Probab=7.17  E-value=72  Score=12.58  Aligned_cols=14  Identities=43%  Similarity=0.769  Sum_probs=8.2

Q ss_pred             CCCEEEEEEECHHH
Q ss_conf             58828988710089
Q gi|254781148|r   13 NNNSIYYFIGLEQE   26 (69)
Q Consensus        13 nnnsiyyfigleqe   26 (69)
                      ..|.+|||.+..||
T Consensus       150 ~gd~l~~~~~~~qe  163 (165)
T d1cf2o2         150 VDNEIYYMQAVHQE  163 (165)
T ss_dssp             ETTEEEEEEEECTT
T ss_pred             ECCEEEEEEECCCC
T ss_conf             89999999823556


No 6  
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.44  E-value=84  Score=12.22  Aligned_cols=42  Identities=29%  Similarity=0.408  Sum_probs=26.0

Q ss_pred             EECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             710089998888706555999985177621147899999985522047
Q gi|254781148|r   21 IGLEQEILGSLLLKGNLQPIISFLDAQHFIDPIHSEVFRAITRKTTNE   68 (69)
Q Consensus        21 igleqeilgslllkgnlqpiisfldaqhfidpihsevfraitrkttne   68 (69)
                      +..++..|=.|+.-.      .|||-+..+|-.-..|-.-|..||..|
T Consensus         8 ~~~d~~~Lf~Li~AA------nyL~I~~Lldl~c~~vA~~ikgKt~ee   49 (55)
T d1fs1b1           8 LKVDQGTLFELILAA------NYLDIKGLLDVTCKTVANMIKGKTPEE   49 (55)
T ss_dssp             TCSCHHHHHHHHHHH------HHHTCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHCCHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             875889999999999------881947899999999999886999999


No 7  
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.61  E-value=1.1e+02  Score=11.56  Aligned_cols=41  Identities=22%  Similarity=0.413  Sum_probs=22.8

Q ss_pred             EECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             71008999888870655599998517762114789999998552204
Q gi|254781148|r   21 IGLEQEILGSLLLKGNLQPIISFLDAQHFIDPIHSEVFRAITRKTTN   67 (69)
Q Consensus        21 igleqeilgslllkgnlqpiisfldaqhfidpihsevfraitrkttn   67 (69)
                      +..++..|-.|+.-.|      |||-+..+|-.-..|-.-|..||..
T Consensus         9 ~~~d~~~L~~li~AAn------yL~I~~Ll~l~c~~vA~~ikgkt~e   49 (70)
T d1nexa1           9 LKVDQEMLYEIILAAN------YLNIKPLLDAGCKVVAEMIRGRSPE   49 (70)
T ss_dssp             TCSCHHHHHHHHHHHH------HHTCHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHCCHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHHHCCCCHH
T ss_conf             8338899999999998------7095789999999999998259999


No 8  
>d2p0ta1 a.290.1.1 (A:22-169) Uncharacterized protein PSPTO4464 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=4.59  E-value=1.1e+02  Score=11.56  Aligned_cols=37  Identities=22%  Similarity=0.365  Sum_probs=29.7

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9988887065559999851776211478999999855
Q gi|254781148|r   27 ILGSLLLKGNLQPIISFLDAQHFIDPIHSEVFRAITR   63 (69)
Q Consensus        27 ilgslllkgnlqpiisfldaqhfidpihsevfraitr   63 (69)
                      -+|.|+-..+..||..+++....-..-+...|..+.+
T Consensus        50 ~IGKLmR~~D~e~i~~~l~~~~~~~~~~~~~~h~lE~   86 (148)
T d2p0ta1          50 FIGKLMRDQDQEAILVLLDQLDASTRQYNERFHNLER   86 (148)
T ss_dssp             HHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9998875458999999999987602888999999999


No 9  
>d1b77a2 d.131.1.2 (A:111-228) gp45 sliding clamp {Bacteriophage RB69 [TaxId: 12353]}
Probab=4.36  E-value=59  Score=13.06  Aligned_cols=21  Identities=19%  Similarity=0.477  Sum_probs=12.6

Q ss_pred             HHHHHCC-CCCEEEEEEECHHH
Q ss_conf             6776214-58828988710089
Q gi|254781148|r    6 SKKYYSR-NNNSIYYFIGLEQE   26 (69)
Q Consensus         6 skkyysr-nnnsiyyfigleqe   26 (69)
                      |+|..++ .|..+-|||.||..
T Consensus        92 s~~~is~f~~~~l~Y~IALE~~  113 (118)
T d1b77a2          92 GDKVAAKFESSQVSYVIAMEAD  113 (118)
T ss_dssp             TTEEEEEEECSSCEEEEECCTT
T ss_pred             CHHHEEEECCCCEEEEEEECCC
T ss_conf             6113013248977999998888


No 10 
>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.74  E-value=96  Score=11.89  Aligned_cols=15  Identities=20%  Similarity=0.452  Sum_probs=10.4

Q ss_pred             CCHHHHHHHCCCCCE
Q ss_conf             402567762145882
Q gi|254781148|r    2 LSDFSKKYYSRNNNS   16 (69)
Q Consensus         2 lsdfskkyysrnnns   16 (69)
                      +..||++|+..|.+.
T Consensus       103 le~Fs~~y~~~Np~~  117 (187)
T d1r8se_         103 MEAFAQRYCLCNPGV  117 (187)
T ss_dssp             HHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHCCCC
T ss_conf             999999999869886


Done!