Query gi|254781148|ref|YP_003065561.1| hypothetical protein CLIBASIA_05275 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 69 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:34:58 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781148.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1b79a_ a.81.1.1 (A:) N-termin 96.0 0.0027 1.9E-07 36.7 3.5 44 21-64 5-49 (102) 2 d1bm9a_ a.4.5.7 (A:) Replicati 18.8 18 0.0013 15.9 1.0 15 50-64 48-62 (120) 3 d1vyia_ d.293.1.1 (A:) Phospho 18.3 21 0.0015 15.5 1.2 33 3-42 22-54 (111) 4 d1dk0a_ d.35.1.1 (A:) Heme-bin 9.0 63 0.0046 12.9 1.7 18 31-48 137-158 (173) 5 d1cf2o2 d.81.1.1 (O:139-303) G 7.2 72 0.0053 12.6 1.1 14 13-26 150-163 (165) 6 d1fs1b1 a.157.1.1 (B:86-140) C 6.4 84 0.0061 12.2 1.2 42 21-68 8-49 (55) 7 d1nexa1 a.157.1.1 (A:116-185) 4.6 1.1E+02 0.0081 11.6 1.2 41 21-67 9-49 (70) 8 d2p0ta1 a.290.1.1 (A:22-169) U 4.6 1.1E+02 0.0081 11.6 4.6 37 27-63 50-86 (148) 9 d1b77a2 d.131.1.2 (A:111-228) 4.4 59 0.0043 13.1 -0.8 21 6-26 92-113 (118) 10 d1r8se_ a.118.3.1 (E:) Exchang 3.7 96 0.007 11.9 -0.1 15 2-16 103-117 (187) No 1 >d1b79a_ a.81.1.1 (A:) N-terminal domain of DnaB helicase {Escherichia coli [TaxId: 562]} Probab=95.97 E-value=0.0027 Score=36.70 Aligned_cols=44 Identities=27% Similarity=0.453 Sum_probs=37.6 Q ss_pred EECHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71008999888870655-599998517762114789999998552 Q gi|254781148|r 21 IGLEQEILGSLLLKGNL-QPIISFLDAQHFIDPIHSEVFRAITRK 64 (69) Q Consensus 21 igleqeilgslllkgnl-qpiisfldaqhfidpihsevfraitrk 64 (69) +-.||.+||++|+.++. .-+..++...+|-+|.|..+|++|..- T Consensus 5 ~eaE~~vLg~lL~~~~~~~~v~~~l~~~dFy~~~h~~If~ai~~l 49 (102) T d1b79a_ 5 IEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARL 49 (102) T ss_dssp HHHHHHHHHHHHHCGGGHHHHHTTCCGGGSSSHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHCCHHHHCHHHHHHHHHHHHHH T ss_conf 899999999999391389999975399986519899999999998 No 2 >d1bm9a_ a.4.5.7 (A:) Replication terminator protein (RTP) {Bacillus subtilis [TaxId: 1423]} Probab=18.84 E-value=18 Score=15.92 Aligned_cols=15 Identities=33% Similarity=0.722 Sum_probs=11.9 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 114789999998552 Q gi|254781148|r 50 IDPIHSEVFRAITRK 64 (69) Q Consensus 50 idpihsevfraitrk 64 (69) -.|-|||++||...- T Consensus 48 y~P~hsEiYraLHeL 62 (120) T d1bm9a_ 48 FKPNHTEVYRSLHEL 62 (120) T ss_dssp CCCCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHH T ss_conf 899778999999999 No 3 >d1vyia_ d.293.1.1 (A:) Phosphoprotein M1, C-terminal domain {Rabies virus, strain CVS-11 [TaxId: 11292]} Probab=18.30 E-value=21 Score=15.53 Aligned_cols=33 Identities=39% Similarity=0.520 Sum_probs=19.6 Q ss_pred CHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHCCHHHHHH Q ss_conf 0256776214588289887100899988887065559999 Q gi|254781148|r 3 SDFSKKYYSRNNNSIYYFIGLEQEILGSLLLKGNLQPIIS 42 (69) Q Consensus 3 sdfskkyysrnnnsiyyfigleqeilgslllkgnlqpiis 42 (69) ..|||||--....|--+.-..|| ||-||..|+. T Consensus 22 ESfSKKYkFPSrSSGIFL~NFEQ-------LKmNLDdIVk 54 (111) T d1vyia_ 22 ESFSKKYKFPSRSSGIFLYNFEQ-------LKMNLDDIVK 54 (111) T ss_dssp HTTTCCEEEEBTTSCEEEECGGG-------GCCCHHHHHH T ss_pred HHHHHCCCCCCCCCCEEEECHHH-------HHCCHHHHHH T ss_conf 98655046887777467761898-------7456899999 No 4 >d1dk0a_ d.35.1.1 (A:) Heme-binding protein A (HasA) {Serratia marcescens [TaxId: 615]} Probab=8.99 E-value=63 Score=12.89 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=13.9 Q ss_pred HHHHCCHHHHHH----HHHHHH Q ss_conf 887065559999----851776 Q gi|254781148|r 31 LLLKGNLQPIIS----FLDAQH 48 (69) Q Consensus 31 lllkgnlqpiis----fldaqh 48 (69) =|++||..|+.. .|.||- T Consensus 137 gLmrGNa~plLe~l~~iLkA~G 158 (173) T d1dk0a_ 137 GLMSGDTGALETALNGILDDYG 158 (173) T ss_dssp HHHTTCCHHHHHHHHHHHGGGT T ss_pred HHHCCCCHHHHHHHHHHHHCCC T ss_conf 5433880788888888987079 No 5 >d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Probab=7.17 E-value=72 Score=12.58 Aligned_cols=14 Identities=43% Similarity=0.769 Sum_probs=8.2 Q ss_pred CCCEEEEEEECHHH Q ss_conf 58828988710089 Q gi|254781148|r 13 NNNSIYYFIGLEQE 26 (69) Q Consensus 13 nnnsiyyfigleqe 26 (69) ..|.+|||.+..|| T Consensus 150 ~gd~l~~~~~~~qe 163 (165) T d1cf2o2 150 VDNEIYYMQAVHQE 163 (165) T ss_dssp ETTEEEEEEEECTT T ss_pred ECCEEEEEEECCCC T ss_conf 89999999823556 No 6 >d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Probab=6.44 E-value=84 Score=12.22 Aligned_cols=42 Identities=29% Similarity=0.408 Sum_probs=26.0 Q ss_pred EECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 710089998888706555999985177621147899999985522047 Q gi|254781148|r 21 IGLEQEILGSLLLKGNLQPIISFLDAQHFIDPIHSEVFRAITRKTTNE 68 (69) Q Consensus 21 igleqeilgslllkgnlqpiisfldaqhfidpihsevfraitrkttne 68 (69) +..++..|=.|+.-. .|||-+..+|-.-..|-.-|..||..| T Consensus 8 ~~~d~~~Lf~Li~AA------nyL~I~~Lldl~c~~vA~~ikgKt~ee 49 (55) T d1fs1b1 8 LKVDQGTLFELILAA------NYLDIKGLLDVTCKTVANMIKGKTPEE 49 (55) T ss_dssp TCSCHHHHHHHHHHH------HHHTCHHHHHHHHHHHHHHHTTCCHHH T ss_pred HHCCHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHCCCCHHH T ss_conf 875889999999999------881947899999999999886999999 No 7 >d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=4.61 E-value=1.1e+02 Score=11.56 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=22.8 Q ss_pred EECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 71008999888870655599998517762114789999998552204 Q gi|254781148|r 21 IGLEQEILGSLLLKGNLQPIISFLDAQHFIDPIHSEVFRAITRKTTN 67 (69) Q Consensus 21 igleqeilgslllkgnlqpiisfldaqhfidpihsevfraitrkttn 67 (69) +..++..|-.|+.-.| |||-+..+|-.-..|-.-|..||.. T Consensus 9 ~~~d~~~L~~li~AAn------yL~I~~Ll~l~c~~vA~~ikgkt~e 49 (70) T d1nexa1 9 LKVDQEMLYEIILAAN------YLNIKPLLDAGCKVVAEMIRGRSPE 49 (70) T ss_dssp TCSCHHHHHHHHHHHH------HHTCHHHHHHHHHHHHHHHTTCCHH T ss_pred HHCCHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHHHCCCCHH T ss_conf 8338899999999998------7095789999999999998259999 No 8 >d2p0ta1 a.290.1.1 (A:22-169) Uncharacterized protein PSPTO4464 {Pseudomonas syringae pv. tomato [TaxId: 323]} Probab=4.59 E-value=1.1e+02 Score=11.56 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=29.7 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9988887065559999851776211478999999855 Q gi|254781148|r 27 ILGSLLLKGNLQPIISFLDAQHFIDPIHSEVFRAITR 63 (69) Q Consensus 27 ilgslllkgnlqpiisfldaqhfidpihsevfraitr 63 (69) -+|.|+-..+..||..+++....-..-+...|..+.+ T Consensus 50 ~IGKLmR~~D~e~i~~~l~~~~~~~~~~~~~~h~lE~ 86 (148) T d2p0ta1 50 FIGKLMRDQDQEAILVLLDQLDASTRQYNERFHNLER 86 (148) T ss_dssp HHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9998875458999999999987602888999999999 No 9 >d1b77a2 d.131.1.2 (A:111-228) gp45 sliding clamp {Bacteriophage RB69 [TaxId: 12353]} Probab=4.36 E-value=59 Score=13.06 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=12.6 Q ss_pred HHHHHCC-CCCEEEEEEECHHH Q ss_conf 6776214-58828988710089 Q gi|254781148|r 6 SKKYYSR-NNNSIYYFIGLEQE 26 (69) Q Consensus 6 skkyysr-nnnsiyyfigleqe 26 (69) |+|..++ .|..+-|||.||.. T Consensus 92 s~~~is~f~~~~l~Y~IALE~~ 113 (118) T d1b77a2 92 GDKVAAKFESSQVSYVIAMEAD 113 (118) T ss_dssp TTEEEEEEECSSCEEEEECCTT T ss_pred CHHHEEEECCCCEEEEEEECCC T ss_conf 6113013248977999998888 No 10 >d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]} Probab=3.74 E-value=96 Score=11.89 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=10.4 Q ss_pred CCHHHHHHHCCCCCE Q ss_conf 402567762145882 Q gi|254781148|r 2 LSDFSKKYYSRNNNS 16 (69) Q Consensus 2 lsdfskkyysrnnns 16 (69) +..||++|+..|.+. T Consensus 103 le~Fs~~y~~~Np~~ 117 (187) T d1r8se_ 103 MEAFAQRYCLCNPGV 117 (187) T ss_dssp HHHHHHHHHHHSTTS T ss_pred HHHHHHHHHHHCCCC T ss_conf 999999999869886 Done!