RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781148|ref|YP_003065561.1| hypothetical protein CLIBASIA_05275 [Candidatus Liberibacter asiaticus str. psy62] (69 letters) >d1b79a_ a.81.1.1 (A:) N-terminal domain of DnaB helicase {Escherichia coli [TaxId: 562]} Length = 102 Score = 31.1 bits (70), Expect = 0.025 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 21 IGLEQEILGSLLLKGN-LQPIISFLDAQHFIDPIHSEVFRAITR 63 I EQ +LG L+L + + A F H +F + R Sbjct: 5 IEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMAR 48 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.323 0.140 0.403 Gapped Lambda K H 0.267 0.0499 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 247,793 Number of extensions: 8826 Number of successful extensions: 13 Number of sequences better than 10.0: 1 Number of HSP's gapped: 13 Number of HSP's successfully gapped: 2 Length of query: 69 Length of database: 2,407,596 Length adjustment: 37 Effective length of query: 32 Effective length of database: 1,899,586 Effective search space: 60786752 Effective search space used: 60786752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 47 (22.4 bits)