HHsearch alignment for GI: 254781149 and conserved domain: CHL00059
>CHL00059 atpA ATP synthase CF1 alpha subunit.
Probab=94.01 E-value=0.077 Score=33.03 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 851113777776553016836887068741488999999999630223236411675
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEM 180 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEM 180 (266)
T Consensus 146 pL~TGIkaID~l~P-iGrGQR~lI~Gd~gvGKTtl~~d~Iinqk~~~vicVyvaIGe 201 (501)
T CHL00059 146 PLQTGLIAIDSMIP-IGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIGQ 201 (501)
T ss_pred CCCCCCEEEECCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 23234211100367-667756677557884477999999985246884899998556