HHsearch alignment for GI: 254781149 and conserved domain: COG0305
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=388.71 Aligned_cols=240 Identities=24% Similarity=0.345 Sum_probs=218.3
Q ss_pred HHHHHHHHCC---CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHH
Q ss_conf 8989863005---778568999998406763689999999999999999999999999998511444234-545899999
Q gi|254781149|r 4 EIISHFESQT---KISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDPTCNTA-TLIRKSMQS 79 (266)
Q Consensus 4 ~~~~~le~~~---~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~~~~~~-~~~~~~e~~ 79 (266)
T Consensus 62 tv~~~l~~~~~~~~igg~~yl~~L~~~~ps-~~Ni~~y~~iv~e~s~~R~Li~~~~~i~~~~~~~~~~~~~~~l~~ae~~ 140 (435)
T COG0305 62 TVSEELSDRGLLTRIGGANYLATLIDRTPS-AANIDYYAKIVKEKALLRELIEAGNEIVNLGYESEKDLDEEVLDAAEKK 140 (435)
T ss_pred HHHHHHHHCCHHHHCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 899998641447660758999999862887-6459999999999999999999999999965345444389999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
Q ss_conf 99999654431046655430116899999999999863036667851113777776553016836887068741488999
Q gi|254781149|r 80 FEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQKKEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFA 159 (266)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~a 159 (266)
T Consensus 141 i~~i~~~-------~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~Gi~tgf~~LD~~t~G~~~~dLiilAaRP~mGKTafa 213 (435)
T COG0305 141 IFDVAER-------KNSEDFVHIGDLLKETMDEIEARFENGGLIGVPTGFTDLDEITSGFRPGDLIIVAARPGMGKTALA 213 (435)
T ss_pred HHHHHHH-------HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCHHHHH
T ss_conf 9999975-------213322448899999999999873557885144683456777337746777997168999758999
Q ss_pred HHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 9999996302-232364116753489999999963022323478555017889989999999999999729954747998
Q gi|254781149|r 160 LSTALHMAMS-GHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPS 238 (266)
Q Consensus 160 lnia~~~a~~-g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~ 238 (266)
T Consensus 214 lnia~n~a~~~~~~v~iFSLEM~~eql~~R~Ls~~-----s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~ 288 (435)
T COG0305 214 LNIALNAAADGRKPVAIFSLEMSEEQLVMRLLSSE-----SGIESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPG 288 (435)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCC-----CCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCC
T ss_conf 99999999855897599982679999999753401-----1545100212542689999999999987617854337888
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 898999999999999947
Q gi|254781149|r 239 PGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 239 ~ti~~ira~aR~~k~k~~ 256 (266)
T Consensus 289 ~si~eir~~aRrlk~~~~ 306 (435)
T COG0305 289 LTITEIRSKARRLKLKHN 306 (435)
T ss_pred CCHHHHHHHHHHHHHHCC
T ss_conf 878889999998887459