HHsearch alignment for GI: 254781149 and conserved domain: COG1245
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only].
Probab=95.65 E-value=0.11 Score=32.07 Aligned_cols=126 Identities=20% Similarity=0.190 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHHH---------CCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC---------CCEEEE--CCCCCHH
Q ss_conf 511137777765530---------1683688706874148899999999963-022---------323641--1675348
Q gi|254781149|r 125 IKWGLQSVDHLMGGV---------QLRELILIGARPSMGKTTFALSTALHMA-MSG---------HGVAFF--SLEMDRE 183 (266)
Q Consensus 125 i~TG~~~LD~~~gG~---------~~g~LiviaaRP~mGKTa~alnia~~~a-~~g---------~~Vl~f--SlEMs~~ 183 (266)
T Consensus 341 ~lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKP-QyI~~~~~gtV~ 419 (591)
T COG1245 341 TLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKP-QYISPDYDGTVE 419 (591)
T ss_pred EEEECCHHEEECCCEEEEECCCEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEECCC-EEECCCCCCCHH
T ss_conf 0662100201037658995387463354899988887546779999856625787887651475055-340378998299
Q ss_pred HHHHHHHHHHHCCCCC--------CCCHHHCCC---CCCCHHHHHHHHHHHHHHHHCCCEEECCCCC--CHHHHHHHHHH
Q ss_conf 9999999963022323--------478555017---8899899999999999997299547479988--98999999999
Q gi|254781149|r 184 KLGARALSNLLYPSSS--------RIPYLNLIR---GEINQEQYRISQGICEKLQDFPLIIDDRPSP--GIMEFVHVANG 250 (266)
Q Consensus 184 ql~~R~ls~~t~~~~s--------~I~~~~l~~---g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~--ti~~ira~aR~ 250 (266)
T Consensus 420 ~~l~~~~~~~~--~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv 497 (591)
T COG1245 420 DLLRSAIRSAF--GSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV 497 (591)
T ss_pred HHHHHHCCCCC--CCCHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHCCHHHHHHHHHH
T ss_conf 99987430001--4505677640744647787460345773258899999986565677886584343068999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254781149|r 251 LRN 253 (266)
Q Consensus 251 ~k~ 253 (266)
T Consensus 498 IRR 500 (591)
T COG1245 498 IRR 500 (591)
T ss_pred HHH
T ss_conf 999