HHsearch alignment for GI: 254781149 and conserved domain: COG4608
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism].
Probab=93.58 E-value=0.48 Score=27.50 Aligned_cols=122 Identities=17% Similarity=0.105 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEC---CCCCHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 3777776553016836887068741488999999999630223236411---6753489999999963022323478555
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFS---LEMDREKLGARALSNLLYPSSSRIPYLN 205 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fS---lEMs~~ql~~R~ls~~t~~~~s~I~~~~ 205 (266)
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vg---l~~~~ 102 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVG---LPEEF 102 (268)
T ss_pred EEEECCEEEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHCCHHHHHHHHHHHHHHHC---CCHHH
T ss_conf 487511568975898789993688877879999972838887269986853111366679999999999809---88778
Q ss_pred CCC--CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH-HHHHHHHHHH
Q ss_conf 017--88998999999999999972995474799889899-9999999999
Q gi|254781149|r 206 LIR--GEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME-FVHVANGLRN 253 (266)
Q Consensus 206 l~~--g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~-ira~aR~~k~ 253 (266)
T Consensus 103 ~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~ 153 (268)
T COG4608 103 LYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLK 153 (268)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCHHHCCHHHHHHHHHHHH
T ss_conf 633883037313356999999850986797437211012467999999999