HHsearch alignment for GI: 254781149 and conserved domain: PRK04301
>PRK04301 radA DNA repair and recombination protein RadA; Validated.
Probab=98.28 E-value=2.9e-05 Score=56.97 Aligned_cols=137 Identities=16% Similarity=0.206 Sum_probs=82.2
Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC------CCCEEEECCCCCHH-----HHHHHH
Q ss_conf 678511137777765-530168368870687414889999999996302------23236411675348-----999999
Q gi|254781149|r 122 NPDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMS------GHGVAFFSLEMDRE-----KLGARA 189 (266)
Q Consensus 122 ~~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~------g~~Vl~fSlEMs~~-----ql~~R~ 189 (266)
T Consensus 82 ~~~isTg~~~lD~lLgGGi~~g~ITEi~Ge~gsGKTQlc~qLav~~qlp~~~GGl~g~vvYIDTEgtF~peRi~qia~~~ 161 (318)
T PRK04301 82 IGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEEGGLEGKAVYIDTENTFRPERIEQMAEGL 161 (318)
T ss_pred CCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHEECCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 78247888788805479833670788866887870356677676533767778988637999568986979999999984
Q ss_pred HHHHHCCCCCCCCHHHCC-CCCCC-HHHHHHHHHHHHHHHH-C--CCEEECCCC----------CCHHHHHHHHHHHHHH
Q ss_conf 996302232347855501-78899-8999999999999972-9--954747998----------8989999999999999
Q gi|254781149|r 190 LSNLLYPSSSRIPYLNLI-RGEIN-QEQYRISQGICEKLQD-F--PLIIDDRPS----------PGIMEFVHVANGLRNK 254 (266)
Q Consensus 190 ls~~t~~~~s~I~~~~l~-~g~l~-~~e~~~i~~a~~~l~~-~--pl~IdD~~~----------~ti~~ira~aR~~k~k 254 (266)
T Consensus 162 -----g~d~~~~-L~nI~v~r~~~~~~q~~~~~~~~~~~~~~~~v~LvVvDSi~alfR~e~~grg~l~~Rq~~L~~~l~~ 235 (318)
T PRK04301 162 -----GLDPDEV-LDNIHVARAYNSDHQMLLAEKAEELIKEGNNIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHD 235 (318)
T ss_pred -----CCCHHHH-HHCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf -----9997898-6402686139989999999999999962788049999434232121046853099999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 4799986421
Q gi|254781149|r 255 HTKMVQLYRL 264 (266)
Q Consensus 255 ~~~~~~~~~~ 264 (266)
T Consensus 236 L~~lA~~~ni 245 (318)
T PRK04301 236 LLRLADLYNA 245 (318)
T ss_pred HHHHHHHCCC
T ss_conf 9999998595